Calcium in PDB 1fzp: Crystal Structures of Sara: A Pleiotropic Regulator of Virulence Genes in S. Aureus

Protein crystallography data

The structure of Crystal Structures of Sara: A Pleiotropic Regulator of Virulence Genes in S. Aureus, PDB code: 1fzp was solved by M.A.Schumacher, B.Hurlburt, R.G.Brennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.95
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.500, 65.200, 57.800, 90.00, 118.00, 90.00
R / Rfree (%) n/a / n/a

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structures of Sara: A Pleiotropic Regulator of Virulence Genes in S. Aureus (pdb code 1fzp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structures of Sara: A Pleiotropic Regulator of Virulence Genes in S. Aureus, PDB code: 1fzp:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1fzp

Go back to Calcium Binding Sites List in 1fzp
Calcium binding site 1 out of 2 in the Crystal Structures of Sara: A Pleiotropic Regulator of Virulence Genes in S. Aureus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structures of Sara: A Pleiotropic Regulator of Virulence Genes in S. Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca200

b:72.0
occ:1.00
OE2 D:GLU11 1.5 0.0 1.0
CD D:GLU11 2.8 98.8 1.0
C5' W:DA9 3.3 53.0 1.0
NH1 B:ARG84 3.4 15.2 1.0
OE1 D:GLU11 3.4 18.0 1.0
O5' W:DA9 3.6 45.2 1.0
OP1 W:DA9 3.7 50.5 1.0
O3' W:DT8 3.8 29.1 1.0
P W:DA9 3.9 53.4 1.0
CG D:GLU11 3.9 99.8 1.0
CB D:GLU11 4.1 67.9 1.0
ND2 B:ASN85 4.4 35.2 1.0
C3' W:DT8 4.6 22.1 1.0
CZ B:ARG84 4.6 90.1 1.0
C4' W:DA9 4.7 54.9 1.0

Calcium binding site 2 out of 2 in 1fzp

Go back to Calcium Binding Sites List in 1fzp
Calcium binding site 2 out of 2 in the Crystal Structures of Sara: A Pleiotropic Regulator of Virulence Genes in S. Aureus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structures of Sara: A Pleiotropic Regulator of Virulence Genes in S. Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca200

b:73.3
occ:1.00
OP1 W:DT6 2.7 38.4 1.0
OE2 B:GLU11 2.8 28.3 1.0
OP1 K:DA9 2.9 39.4 1.0
O5' W:DT6 3.4 29.2 1.0
P W:DT6 3.7 38.4 1.0
C5' K:DA9 3.8 34.1 1.0
P K:DA9 3.9 36.7 1.0
O5' K:DA9 4.0 27.2 1.0
CD B:GLU11 4.0 84.2 1.0
ND2 D:ASN85 4.2 27.9 1.0
O3' K:DT8 4.2 29.1 1.0
C5' W:DT6 4.3 36.0 1.0
NH1 D:ARG84 4.4 21.0 1.0
O3' W:DA5 4.6 31.0 1.0
C4' W:DT6 4.6 29.5 1.0
C4' K:DA9 4.6 31.4 1.0
CG B:GLU11 4.7 91.7 1.0
OP2 W:DT6 4.8 40.0 1.0
O3' K:DA9 4.8 37.2 1.0
C3' K:DA9 4.9 29.7 1.0
C3' W:DT6 4.9 22.5 1.0
OE1 B:GLU11 5.0 75.0 1.0

Reference:

M.A.Schumacher, B.K.Hurlburt, R.G.Brennan. Crystal Structures of Sara, A Pleiotropic Regulator of Virulence Genes in S. Aureus. Nature V. 409 215 2001.
ISSN: ISSN 0028-0836
PubMed: 11196648
DOI: 10.1038/35051623
Page generated: Sat Dec 12 02:56:51 2020

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