Calcium in PDB 4ror: Crystal Structure of Malate Dehydrogenase From Methylobacterium Extorquens

Enzymatic activity of Crystal Structure of Malate Dehydrogenase From Methylobacterium Extorquens

All present enzymatic activity of Crystal Structure of Malate Dehydrogenase From Methylobacterium Extorquens:
1.1.1.37;

Protein crystallography data

The structure of Crystal Structure of Malate Dehydrogenase From Methylobacterium Extorquens, PDB code: 4ror was solved by J.M.Gonzalez, R.Marti-Arbona, C.J.Unkefer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.77 / 1.66
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 108.995, 108.995, 104.659, 90.00, 90.00, 120.00
R / Rfree (%) 14.7 / 17.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Malate Dehydrogenase From Methylobacterium Extorquens (pdb code 4ror). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Malate Dehydrogenase From Methylobacterium Extorquens, PDB code: 4ror:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4ror

Go back to Calcium Binding Sites List in 4ror
Calcium binding site 1 out of 2 in the Crystal Structure of Malate Dehydrogenase From Methylobacterium Extorquens


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Malate Dehydrogenase From Methylobacterium Extorquens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:12.3
occ:1.00
O A:HOH546 2.4 13.1 1.0
OE1 A:GLU287 2.5 12.3 1.0
OE2 A:GLU287 2.5 13.6 1.0
O A:HOH544 2.6 13.8 1.0
CD A:GLU287 2.8 11.3 1.0
O A:HOH770 4.2 15.3 1.0
CG A:GLU287 4.3 11.6 1.0
O A:HOH742 4.6 15.9 1.0
N A:TYR264 4.7 14.0 1.0
O A:GLY262 4.8 14.8 1.0
O A:HOH507 4.9 13.9 1.0
O A:HOH603 4.9 23.6 1.0
CB A:GLU287 5.0 11.4 1.0

Calcium binding site 2 out of 2 in 4ror

Go back to Calcium Binding Sites List in 4ror
Calcium binding site 2 out of 2 in the Crystal Structure of Malate Dehydrogenase From Methylobacterium Extorquens


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Malate Dehydrogenase From Methylobacterium Extorquens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:40.7
occ:1.00
O A:HOH822 2.1 37.1 1.0
O A:HOH821 2.3 31.4 1.0
O A:HOH706 2.5 31.7 1.0
OE2 A:GLU166 3.5 11.7 0.5
OE2 A:GLU166 3.8 13.7 0.5
OE1 A:GLU166 4.1 14.0 0.5
CD A:GLU166 4.2 14.7 0.5
OE1 A:GLU166 4.4 17.4 0.5
CD A:GLU166 4.4 14.3 0.5

Reference:

J.M.Gonzalez, R.Marti-Arbona, C.J.Unkefer. Crystal Structure of Malate Dehydrogenase From Methylobacterium Extorquens To Be Published.
Page generated: Sat Dec 12 05:07:13 2020

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