Calcium in PDB 5dd2: Human Gelsolin From Residues GLU28 to ARG161 with Calcium

The structure of Human Gelsolin From Residues GLU28 to ARG161 with Calcium, PDB code: 5dd2 was solved by P.Sharma, M.Badmalia, S.P.S.Yadav, S.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.84 / 2.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	35.394, 63.570, 98.140, 90.00, 90.00, 90.00
R / Rfree (%)	22 / 31.6

The binding sites of Calcium atom in the Human Gelsolin From Residues GLU28 to ARG161 with Calcium (pdb code 5dd2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Human Gelsolin From Residues GLU28 to ARG161 with Calcium, PDB code: 5dd2:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Human Gelsolin From Residues GLU28 to ARG161 with Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Gelsolin From Residues GLU28 to ARG161 with Calcium within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca201 b:60.2 occ:1.00 O G:ALA116 2.8 47.9 1.0 OD2 G:ASP109 3.0 54.4 1.0 O G:GLY114 3.0 57.8 1.0 OD1 G:ASP109 3.1 46.8 1.0 CG G:ASP109 3.4 50.5 1.0 C G:GLY114 3.6 53.1 1.0 CA G:GLY114 3.9 49.9 1.0 C G:ALA116 3.9 46.6 1.0 O G:HOH304 4.3 57.6 1.0 N G:ALA116 4.4 53.6 1.0 N G:ARG115 4.5 50.0 1.0 C G:ARG115 4.7 49.7 1.0 CG G:GLN118 4.7 50.9 1.0 CA G:ALA116 4.7 50.4 1.0 CB G:ASP109 4.8 45.6 1.0 N G:VAL117 4.9 49.6 1.0 CA G:ARG115 4.9 48.8 1.0 CA G:VAL117 5.0 48.4 1.0

Calcium binding site 2 out of 4 in the Human Gelsolin From Residues GLU28 to ARG161 with Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Human Gelsolin From Residues GLU28 to ARG161 with Calcium within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca202 b:81.1 occ:1.00 OE2 G:GLU97 2.9 59.9 1.0 O G:GLY65 2.9 58.6 1.0 O G:VAL145 3.0 63.4 1.0 OE1 G:GLU97 3.0 59.4 1.0 CD G:GLU97 3.3 58.6 1.0 O G:GLU92 3.9 55.9 1.0 N G:SER147 4.0 75.1 1.0 OD1 G:ASP66 4.0 59.4 1.0 C G:GLY65 4.0 51.1 1.0 N G:SER94 4.1 54.3 1.0 C G:VAL145 4.1 68.3 1.0 CA G:ALA146 4.1 70.0 1.0 OG G:SER94 4.2 54.9 1.0 C G:ALA146 4.3 76.1 1.0 CB G:SER94 4.3 53.6 1.0 CA G:CYS93 4.5 48.6 1.0 N G:ALA146 4.6 69.0 1.0 CA G:GLY65 4.6 49.5 1.0 CG G:GLU97 4.7 52.4 1.0 C G:CYS93 4.8 54.1 1.0 CA G:SER147 4.8 78.2 1.0 CA G:SER94 4.8 53.6 1.0 C G:GLU92 4.9 54.9 1.0

Calcium binding site 3 out of 4 in the Human Gelsolin From Residues GLU28 to ARG161 with Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Human Gelsolin From Residues GLU28 to ARG161 with Calcium within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:76.5 occ:1.00 O A:ALA116 2.9 66.3 1.0 OD2 A:ASP109 3.0 58.5 1.0 O A:GLY114 3.0 59.0 1.0 OD1 A:ASP109 3.4 63.9 1.0 CG A:ASP109 3.6 62.8 1.0 C A:GLY114 3.8 64.6 1.0 C A:ALA116 4.0 57.9 1.0 CA A:GLY114 4.3 62.5 1.0 N A:ALA116 4.7 57.3 1.0 C A:ARG115 4.7 57.9 1.0 O A:ARG115 4.7 60.7 1.0 CA A:VAL117 4.8 58.2 1.0 N A:VAL117 4.9 56.8 1.0 N A:ARG115 4.9 64.0 1.0 CA A:ALA116 4.9 55.7 1.0

Calcium binding site 4 out of 4 in the Human Gelsolin From Residues GLU28 to ARG161 with Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Human Gelsolin From Residues GLU28 to ARG161 with Calcium within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:75.3 occ:1.00 O A:GLY65 2.9 55.5 1.0 OE2 A:GLU97 3.0 58.5 1.0 O A:VAL145 3.1 79.5 1.0 OE1 A:GLU97 3.1 54.5 1.0 C A:VAL145 3.4 83.2 1.0 CD A:GLU97 3.4 55.7 1.0 N A:VAL145 3.6 73.2 1.0 C A:GLY144 3.6 76.1 1.0 OD1 A:ASP66 3.7 63.4 1.0 N A:ALA146 3.9 87.9 1.0 CA A:ALA146 4.0 89.0 1.0 CA A:GLY144 4.0 74.6 1.0 C A:GLY65 4.0 57.5 1.0 O A:GLY144 4.0 75.3 1.0 OG A:SER94 4.0 62.3 1.0 CA A:VAL145 4.1 75.0 1.0 C A:ALA146 4.5 93.5 1.0 CA A:GLY65 4.6 63.6 1.0 CG A:ASP66 4.7 63.0 1.0 N A:SER94 4.8 57.6 1.0 N A:SER147 4.8 94.3 1.0 CG A:GLU97 4.8 50.7 1.0 O A:GLU92 4.9 57.5 1.0 CB A:VAL145 5.0 72.8 1.0

P.Sharma, M.Badmalia, S.P.S.Yadav, S.Singh. Gelsolin 28-161 with Calcium To Be Published.