Calcium in PDB 6y41: Fibrinogen-Like Globe Domain of Human ANGPTL2
Protein crystallography data
The structure of Fibrinogen-Like Globe Domain of Human ANGPTL2, PDB code: 6y41
was solved by
J.A.Coker,
T.Krojer,
J.M.Mutisya,
C.H.Arrowsmith,
C.Bountra,
K.S.Midwood,
W.W.Yue,
B.D.Marsden,
Structural Genomics Consortium (Sgc),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
70.63 /
1.79
|
|
Space group
|
P 21 2 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
153.940,
154.860,
172.340,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
19.2 /
21.5
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Fibrinogen-Like Globe Domain of Human ANGPTL2
(pdb code 6y41). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Fibrinogen-Like Globe Domain of Human ANGPTL2, PDB code: 6y41:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 6y41
Go back to
Calcium Binding Sites List in 6y41
Calcium binding site 1 out
of 16 in the Fibrinogen-Like Globe Domain of Human ANGPTL2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Fibrinogen-Like Globe Domain of Human ANGPTL2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca301
b:26.9
occ:1.00
|
OD1
|
A:ASP156
|
2.2
|
30.5
|
1.0
|
|
O
|
A:TYR158
|
2.2
|
25.8
|
1.0
|
|
O
|
A:GLY160
|
2.3
|
27.1
|
1.0
|
|
OD2
|
A:ASP154
|
2.4
|
33.7
|
1.0
|
|
OD1
|
A:ASP154
|
2.4
|
32.0
|
1.0
|
|
O
|
A:HOH412
|
2.4
|
34.8
|
1.0
|
|
O
|
A:HOH460
|
2.5
|
43.8
|
1.0
|
|
CG
|
A:ASP154
|
2.7
|
33.6
|
1.0
|
|
CG
|
A:ASP156
|
3.3
|
31.5
|
1.0
|
|
C
|
A:TYR158
|
3.4
|
24.4
|
1.0
|
|
C
|
A:GLY160
|
3.4
|
26.9
|
1.0
|
|
O
|
A:ASP156
|
3.5
|
38.3
|
1.0
|
|
HA
|
A:ASN161
|
3.6
|
30.8
|
1.0
|
|
H
|
A:TYR158
|
3.6
|
31.1
|
1.0
|
|
H
|
A:ASP156
|
3.6
|
29.3
|
1.0
|
|
OD2
|
A:ASP156
|
3.8
|
31.6
|
1.0
|
|
HB3
|
A:TYR158
|
3.8
|
33.2
|
1.0
|
|
N
|
A:TYR158
|
4.0
|
25.9
|
1.0
|
|
C
|
A:ASP156
|
4.0
|
29.6
|
1.0
|
|
CA
|
A:TYR158
|
4.1
|
23.8
|
1.0
|
|
C
|
A:THR159
|
4.2
|
27.7
|
1.0
|
|
HA
|
A:THR159
|
4.2
|
32.3
|
1.0
|
|
N
|
A:GLY160
|
4.2
|
25.2
|
1.0
|
|
N
|
A:ASP156
|
4.3
|
24.4
|
1.0
|
|
CB
|
A:ASP154
|
4.3
|
32.1
|
1.0
|
|
N
|
A:ASN161
|
4.3
|
27.0
|
1.0
|
|
CA
|
A:ASN161
|
4.4
|
25.7
|
1.0
|
|
N
|
A:THR159
|
4.4
|
31.2
|
1.0
|
|
O
|
A:HOH482
|
4.4
|
34.8
|
1.0
|
|
CA
|
A:GLY160
|
4.4
|
25.0
|
1.0
|
|
CB
|
A:ASP156
|
4.4
|
25.2
|
1.0
|
|
CA
|
A:ASP156
|
4.4
|
25.4
|
1.0
|
|
CB
|
A:TYR158
|
4.4
|
27.6
|
1.0
|
|
CA
|
A:THR159
|
4.5
|
26.9
|
1.0
|
|
O
|
A:THR159
|
4.5
|
36.3
|
1.0
|
|
H
|
A:GLY160
|
4.5
|
30.3
|
1.0
|
|
H
|
A:CYS162
|
4.6
|
31.1
|
1.0
|
|
HB2
|
A:ASP154
|
4.6
|
38.5
|
1.0
|
|
HB3
|
A:ASP154
|
4.6
|
38.5
|
1.0
|
|
HD2
|
A:TYR158
|
4.6
|
35.7
|
1.0
|
|
HA2
|
A:GLY160
|
4.7
|
30.0
|
1.0
|
|
N
|
A:VAL157
|
4.8
|
29.8
|
1.0
|
|
C
|
A:VAL157
|
4.8
|
34.0
|
1.0
|
|
HA
|
A:VAL157
|
4.9
|
37.9
|
1.0
|
|
HB2
|
A:ASP156
|
4.9
|
30.3
|
1.0
|
|
HB2
|
A:ASN161
|
5.0
|
29.1
|
1.0
|
|
Calcium binding site 2 out
of 16 in 6y41
Go back to
Calcium Binding Sites List in 6y41
Calcium binding site 2 out
of 16 in the Fibrinogen-Like Globe Domain of Human ANGPTL2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Fibrinogen-Like Globe Domain of Human ANGPTL2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca301
b:33.7
occ:1.00
|
O
|
B:HOH519
|
2.2
|
46.8
|
1.0
|
|
O
|
B:TYR158
|
2.2
|
28.6
|
1.0
|
|
OD1
|
B:ASP156
|
2.3
|
34.4
|
1.0
|
|
O
|
B:GLY160
|
2.3
|
28.4
|
1.0
|
|
OD1
|
B:ASP154
|
2.4
|
34.8
|
1.0
|
|
OD2
|
B:ASP154
|
2.7
|
36.5
|
1.0
|
|
CG
|
B:ASP154
|
2.9
|
32.9
|
1.0
|
|
O
|
B:ASP156
|
3.0
|
36.9
|
1.0
|
|
CG
|
B:ASP156
|
3.3
|
28.8
|
1.0
|
|
C
|
B:TYR158
|
3.4
|
28.7
|
1.0
|
|
C
|
B:GLY160
|
3.5
|
26.4
|
1.0
|
|
H
|
B:ASP156
|
3.6
|
28.5
|
1.0
|
|
HA
|
B:ASN161
|
3.6
|
33.2
|
1.0
|
|
C
|
B:ASP156
|
3.8
|
31.4
|
1.0
|
|
HB3
|
B:TYR158
|
3.9
|
33.0
|
1.0
|
|
OD2
|
B:ASP156
|
3.9
|
30.0
|
1.0
|
|
H
|
B:TYR158
|
4.0
|
33.1
|
1.0
|
|
N
|
B:TYR158
|
4.0
|
27.6
|
1.0
|
|
N
|
B:ASP156
|
4.2
|
23.7
|
1.0
|
|
CA
|
B:TYR158
|
4.2
|
29.0
|
1.0
|
|
C
|
B:THR159
|
4.2
|
35.7
|
1.0
|
|
N
|
B:GLY160
|
4.2
|
33.9
|
1.0
|
|
HA
|
B:THR159
|
4.3
|
38.6
|
1.0
|
|
CA
|
B:ASP156
|
4.3
|
26.8
|
1.0
|
|
N
|
B:ASN161
|
4.3
|
28.1
|
1.0
|
|
CA
|
B:GLY160
|
4.4
|
31.6
|
1.0
|
|
CB
|
B:ASP154
|
4.4
|
29.3
|
1.0
|
|
CB
|
B:ASP156
|
4.4
|
23.3
|
1.0
|
|
N
|
B:THR159
|
4.4
|
26.5
|
1.0
|
|
CA
|
B:ASN161
|
4.4
|
27.6
|
1.0
|
|
H
|
B:GLY160
|
4.5
|
40.7
|
1.0
|
|
CB
|
B:TYR158
|
4.5
|
27.5
|
1.0
|
|
O
|
B:THR159
|
4.5
|
33.3
|
1.0
|
|
CA
|
B:THR159
|
4.5
|
32.1
|
1.0
|
|
C
|
B:VAL157
|
4.6
|
32.9
|
1.0
|
|
H
|
B:CYS162
|
4.6
|
29.4
|
1.0
|
|
N
|
B:VAL157
|
4.7
|
28.6
|
1.0
|
|
HD2
|
B:TYR158
|
4.7
|
38.0
|
1.0
|
|
HA2
|
B:GLY160
|
4.7
|
37.9
|
1.0
|
|
HB3
|
B:ASP154
|
4.8
|
35.2
|
1.0
|
|
HB2
|
B:ASP154
|
4.8
|
35.2
|
1.0
|
|
HA
|
B:VAL157
|
4.8
|
41.0
|
1.0
|
|
HB2
|
B:ASP156
|
4.9
|
28.0
|
1.0
|
|
C
|
B:ASP154
|
5.0
|
30.2
|
1.0
|
|
CA
|
B:VAL157
|
5.0
|
34.2
|
1.0
|
|
Calcium binding site 3 out
of 16 in 6y41
Go back to
Calcium Binding Sites List in 6y41
Calcium binding site 3 out
of 16 in the Fibrinogen-Like Globe Domain of Human ANGPTL2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Fibrinogen-Like Globe Domain of Human ANGPTL2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca301
b:60.7
occ:1.00
|
O
|
C:GLY160
|
2.3
|
24.9
|
1.0
|
|
OD1
|
C:ASP156
|
2.3
|
27.0
|
1.0
|
|
O
|
C:TYR158
|
2.3
|
22.8
|
1.0
|
|
O
|
C:HOH414
|
2.4
|
38.6
|
1.0
|
|
OD1
|
C:ASP154
|
2.5
|
24.8
|
1.0
|
|
OD2
|
C:ASP154
|
2.6
|
29.9
|
1.0
|
|
O
|
C:HOH529
|
2.6
|
29.1
|
1.0
|
|
CG
|
C:ASP154
|
2.9
|
21.0
|
1.0
|
|
CG
|
C:ASP156
|
3.3
|
26.5
|
1.0
|
|
C
|
C:TYR158
|
3.4
|
28.6
|
1.0
|
|
C
|
C:GLY160
|
3.5
|
24.0
|
1.0
|
|
HA
|
C:ASN161
|
3.6
|
30.5
|
1.0
|
|
H
|
C:TYR158
|
3.6
|
32.0
|
1.0
|
|
HB3
|
C:TYR158
|
3.7
|
37.3
|
1.0
|
|
H
|
C:ASP156
|
3.8
|
28.4
|
1.0
|
|
O
|
C:ASP156
|
3.8
|
34.4
|
1.0
|
|
OD2
|
C:ASP156
|
3.8
|
27.4
|
1.0
|
|
N
|
C:TYR158
|
4.0
|
26.7
|
1.0
|
|
C
|
C:ASP156
|
4.1
|
27.7
|
1.0
|
|
CA
|
C:TYR158
|
4.2
|
26.6
|
1.0
|
|
C
|
C:THR159
|
4.2
|
29.3
|
1.0
|
|
N
|
C:GLY160
|
4.3
|
27.4
|
1.0
|
|
HA
|
C:THR159
|
4.3
|
31.4
|
1.0
|
|
N
|
C:ASN161
|
4.3
|
23.8
|
1.0
|
|
CB
|
C:ASP154
|
4.4
|
22.5
|
1.0
|
|
N
|
C:ASP156
|
4.4
|
23.7
|
1.0
|
|
O
|
C:THR159
|
4.4
|
29.0
|
1.0
|
|
O
|
C:HOH484
|
4.4
|
50.7
|
1.0
|
|
CA
|
C:ASN161
|
4.4
|
25.4
|
1.0
|
|
N
|
C:THR159
|
4.4
|
25.7
|
1.0
|
|
CB
|
C:TYR158
|
4.4
|
31.1
|
1.0
|
|
CA
|
C:GLY160
|
4.4
|
24.1
|
1.0
|
|
CB
|
C:ASP156
|
4.5
|
23.3
|
1.0
|
|
CA
|
C:THR159
|
4.5
|
26.1
|
1.0
|
|
CA
|
C:ASP156
|
4.6
|
21.2
|
1.0
|
|
H
|
C:GLY160
|
4.6
|
32.9
|
1.0
|
|
H
|
C:CYS162
|
4.6
|
26.8
|
1.0
|
|
HB3
|
C:ASP154
|
4.7
|
27.0
|
1.0
|
|
HA2
|
C:GLY160
|
4.7
|
28.9
|
1.0
|
|
N
|
C:VAL157
|
4.8
|
24.5
|
1.0
|
|
O
|
C:HOH417
|
4.8
|
35.1
|
1.0
|
|
HB2
|
C:ASP154
|
4.8
|
27.0
|
1.0
|
|
HD2
|
C:TYR158
|
4.8
|
35.5
|
1.0
|
|
C
|
C:VAL157
|
4.8
|
30.9
|
1.0
|
|
HA
|
C:VAL157
|
4.9
|
32.1
|
1.0
|
|
HB2
|
C:ASP156
|
5.0
|
28.0
|
1.0
|
|
Calcium binding site 4 out
of 16 in 6y41
Go back to
Calcium Binding Sites List in 6y41
Calcium binding site 4 out
of 16 in the Fibrinogen-Like Globe Domain of Human ANGPTL2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Fibrinogen-Like Globe Domain of Human ANGPTL2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca301
b:28.4
occ:1.00
|
OD1
|
D:ASP156
|
2.2
|
31.5
|
1.0
|
|
O
|
D:GLY160
|
2.2
|
32.0
|
1.0
|
|
O
|
D:TYR158
|
2.3
|
30.9
|
1.0
|
|
OD1
|
D:ASP154
|
2.4
|
32.5
|
1.0
|
|
OD2
|
D:ASP154
|
2.6
|
33.2
|
1.0
|
|
CG
|
D:ASP154
|
2.8
|
33.2
|
1.0
|
|
O
|
D:ASP156
|
2.9
|
34.8
|
1.0
|
|
CG
|
D:ASP156
|
3.3
|
29.3
|
1.0
|
|
C
|
D:GLY160
|
3.4
|
28.6
|
1.0
|
|
C
|
D:TYR158
|
3.4
|
30.2
|
1.0
|
|
H
|
D:ASP156
|
3.6
|
31.1
|
1.0
|
|
HA
|
D:ASN161
|
3.6
|
35.4
|
1.0
|
|
C
|
D:ASP156
|
3.7
|
30.0
|
1.0
|
|
HB3
|
D:TYR158
|
3.9
|
33.5
|
1.0
|
|
OD2
|
D:ASP156
|
3.9
|
33.0
|
1.0
|
|
O
|
H:HOH563
|
4.1
|
40.8
|
1.0
|
|
N
|
D:TYR158
|
4.1
|
26.1
|
1.0
|
|
N
|
D:ASP156
|
4.1
|
25.9
|
1.0
|
|
H
|
D:TYR158
|
4.1
|
31.3
|
1.0
|
|
N
|
D:GLY160
|
4.2
|
29.7
|
1.0
|
|
C
|
D:THR159
|
4.2
|
35.5
|
1.0
|
|
CA
|
D:TYR158
|
4.2
|
25.5
|
1.0
|
|
CA
|
D:ASP156
|
4.2
|
24.5
|
1.0
|
|
HA
|
D:THR159
|
4.3
|
39.4
|
1.0
|
|
N
|
D:ASN161
|
4.3
|
29.5
|
1.0
|
|
CB
|
D:ASP156
|
4.3
|
23.1
|
1.0
|
|
CB
|
D:ASP154
|
4.3
|
30.8
|
1.0
|
|
CA
|
D:GLY160
|
4.4
|
32.7
|
1.0
|
|
CA
|
D:ASN161
|
4.4
|
29.5
|
1.0
|
|
N
|
D:THR159
|
4.4
|
27.9
|
1.0
|
|
H
|
D:GLY160
|
4.5
|
35.6
|
1.0
|
|
O
|
D:THR159
|
4.5
|
36.8
|
1.0
|
|
C
|
D:VAL157
|
4.5
|
33.0
|
1.0
|
|
HB2
|
H:SER122
|
4.5
|
39.4
|
1.0
|
|
CB
|
D:TYR158
|
4.5
|
27.9
|
1.0
|
|
N
|
D:VAL157
|
4.6
|
30.3
|
1.0
|
|
CA
|
D:THR159
|
4.6
|
32.9
|
1.0
|
|
H
|
D:CYS162
|
4.7
|
32.7
|
1.0
|
|
HA2
|
D:GLY160
|
4.7
|
39.2
|
1.0
|
|
HD2
|
D:TYR158
|
4.7
|
45.5
|
1.0
|
|
HB3
|
D:ASP154
|
4.7
|
36.9
|
1.0
|
|
HA
|
D:VAL157
|
4.8
|
36.6
|
1.0
|
|
HB2
|
D:ASP154
|
4.8
|
36.9
|
1.0
|
|
HB2
|
D:ASP156
|
4.8
|
27.8
|
1.0
|
|
CA
|
D:VAL157
|
4.9
|
30.5
|
1.0
|
|
C
|
D:ASP154
|
5.0
|
29.5
|
1.0
|
|
Calcium binding site 5 out
of 16 in 6y41
Go back to
Calcium Binding Sites List in 6y41
Calcium binding site 5 out
of 16 in the Fibrinogen-Like Globe Domain of Human ANGPTL2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Fibrinogen-Like Globe Domain of Human ANGPTL2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca302
b:28.4
occ:1.00
|
OD1
|
E:ASP156
|
2.2
|
31.6
|
1.0
|
|
O
|
E:TYR158
|
2.3
|
26.5
|
1.0
|
|
OD1
|
E:ASP154
|
2.3
|
34.5
|
1.0
|
|
O
|
E:GLY160
|
2.3
|
31.3
|
1.0
|
|
O
|
E:HOH545
|
2.4
|
36.9
|
1.0
|
|
OD2
|
E:ASP154
|
2.6
|
39.3
|
1.0
|
|
O
|
E:ASP156
|
2.6
|
34.0
|
1.0
|
|
CG
|
E:ASP154
|
2.8
|
29.8
|
1.0
|
|
CG
|
E:ASP156
|
3.3
|
30.4
|
1.0
|
|
C
|
E:TYR158
|
3.4
|
26.4
|
1.0
|
|
H
|
E:ASP156
|
3.5
|
30.0
|
1.0
|
|
C
|
E:GLY160
|
3.5
|
33.2
|
1.0
|
|
C
|
E:ASP156
|
3.5
|
29.8
|
1.0
|
|
O
|
A:HOH436
|
3.7
|
42.5
|
1.0
|
|
HA
|
E:ASN161
|
3.7
|
32.4
|
1.0
|
|
OD2
|
E:ASP156
|
4.0
|
32.1
|
1.0
|
|
N
|
E:ASP156
|
4.0
|
25.0
|
1.0
|
|
HB3
|
E:TYR158
|
4.0
|
29.0
|
1.0
|
|
N
|
E:TYR158
|
4.1
|
26.6
|
1.0
|
|
H
|
E:TYR158
|
4.1
|
32.0
|
1.0
|
|
CA
|
E:ASP156
|
4.1
|
22.7
|
1.0
|
|
C
|
E:THR159
|
4.2
|
29.4
|
1.0
|
|
N
|
E:GLY160
|
4.2
|
33.2
|
1.0
|
|
CA
|
E:TYR158
|
4.2
|
25.2
|
1.0
|
|
HA
|
E:THR159
|
4.3
|
35.4
|
1.0
|
|
CB
|
E:ASP156
|
4.3
|
24.1
|
1.0
|
|
CB
|
E:ASP154
|
4.3
|
26.5
|
1.0
|
|
N
|
E:ASN161
|
4.4
|
28.3
|
1.0
|
|
CA
|
E:GLY160
|
4.4
|
32.0
|
1.0
|
|
HB2
|
A:SER122
|
4.4
|
36.6
|
1.0
|
|
N
|
E:THR159
|
4.4
|
28.8
|
1.0
|
|
C
|
E:VAL157
|
4.5
|
32.1
|
1.0
|
|
H
|
E:GLY160
|
4.5
|
39.8
|
1.0
|
|
CA
|
E:ASN161
|
4.5
|
27.0
|
1.0
|
|
O
|
E:THR159
|
4.5
|
36.0
|
1.0
|
|
N
|
E:VAL157
|
4.5
|
35.1
|
1.0
|
|
CA
|
E:THR159
|
4.5
|
29.5
|
1.0
|
|
CB
|
E:TYR158
|
4.6
|
24.1
|
1.0
|
|
HD2
|
E:TYR158
|
4.6
|
36.2
|
1.0
|
|
HA2
|
E:GLY160
|
4.7
|
38.5
|
1.0
|
|
HB2
|
E:ASP154
|
4.7
|
31.8
|
1.0
|
|
HB3
|
E:ASP154
|
4.7
|
31.8
|
1.0
|
|
HA
|
E:VAL157
|
4.7
|
42.0
|
1.0
|
|
H
|
E:CYS162
|
4.8
|
31.7
|
1.0
|
|
HB2
|
E:ASP156
|
4.8
|
28.9
|
1.0
|
|
CA
|
E:VAL157
|
4.9
|
35.0
|
1.0
|
|
C
|
E:ASP154
|
4.9
|
35.1
|
1.0
|
|
HA
|
E:ASP154
|
5.0
|
37.7
|
1.0
|
|
O
|
E:HOH418
|
5.0
|
34.8
|
1.0
|
|
Calcium binding site 6 out
of 16 in 6y41
Go back to
Calcium Binding Sites List in 6y41
Calcium binding site 6 out
of 16 in the Fibrinogen-Like Globe Domain of Human ANGPTL2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Fibrinogen-Like Globe Domain of Human ANGPTL2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca301
b:34.2
occ:1.00
|
O
|
F:TYR158
|
2.2
|
30.6
|
1.0
|
|
OD1
|
F:ASP156
|
2.2
|
41.0
|
1.0
|
|
O
|
F:GLY160
|
2.3
|
30.2
|
1.0
|
|
OD2
|
F:ASP154
|
2.5
|
42.2
|
1.0
|
|
OD1
|
F:ASP154
|
2.5
|
33.6
|
1.0
|
|
O
|
F:HOH497
|
2.6
|
41.6
|
1.0
|
|
CG
|
F:ASP154
|
2.8
|
39.2
|
1.0
|
|
O
|
F:ASP156
|
3.0
|
50.3
|
1.0
|
|
CG
|
F:ASP156
|
3.2
|
27.2
|
1.0
|
|
C
|
F:TYR158
|
3.3
|
34.6
|
1.0
|
|
C
|
F:GLY160
|
3.5
|
29.3
|
1.0
|
|
HA
|
F:ASN161
|
3.6
|
36.1
|
1.0
|
|
H
|
F:TYR158
|
3.6
|
38.3
|
1.0
|
|
HB3
|
F:TYR158
|
3.7
|
34.6
|
1.0
|
|
H
|
F:ASP156
|
3.7
|
38.1
|
1.0
|
|
OD2
|
F:ASP156
|
3.8
|
35.6
|
1.0
|
|
C
|
F:ASP156
|
3.8
|
40.9
|
1.0
|
|
N
|
F:TYR158
|
3.9
|
31.9
|
1.0
|
|
CA
|
F:TYR158
|
4.1
|
29.2
|
1.0
|
|
C
|
F:THR159
|
4.2
|
33.8
|
1.0
|
|
HA
|
F:THR159
|
4.3
|
37.2
|
1.0
|
|
N
|
F:GLY160
|
4.3
|
25.6
|
1.0
|
|
N
|
F:ASP156
|
4.3
|
31.8
|
1.0
|
|
CB
|
F:ASP154
|
4.3
|
38.4
|
1.0
|
|
CB
|
F:TYR158
|
4.4
|
28.8
|
1.0
|
|
CA
|
F:ASP156
|
4.4
|
26.6
|
1.0
|
|
N
|
F:THR159
|
4.4
|
29.0
|
1.0
|
|
N
|
F:ASN161
|
4.4
|
30.4
|
1.0
|
|
CB
|
F:ASP156
|
4.4
|
28.5
|
1.0
|
|
CA
|
F:ASN161
|
4.4
|
30.1
|
1.0
|
|
CA
|
F:GLY160
|
4.4
|
27.6
|
1.0
|
|
O
|
F:THR159
|
4.5
|
32.3
|
1.0
|
|
CA
|
F:THR159
|
4.5
|
31.0
|
1.0
|
|
H
|
F:GLY160
|
4.6
|
30.7
|
1.0
|
|
O
|
F:HOH410
|
4.7
|
44.6
|
1.0
|
|
H
|
F:CYS162
|
4.7
|
31.1
|
1.0
|
|
N
|
F:VAL157
|
4.7
|
33.2
|
1.0
|
|
HB3
|
F:ASP154
|
4.7
|
46.0
|
1.0
|
|
C
|
F:VAL157
|
4.7
|
42.1
|
1.0
|
|
HA
|
F:VAL157
|
4.8
|
48.5
|
1.0
|
|
HA2
|
F:GLY160
|
4.8
|
33.1
|
1.0
|
|
HD2
|
F:TYR158
|
4.8
|
34.4
|
1.0
|
|
HB2
|
F:ASP154
|
4.8
|
46.0
|
1.0
|
|
HB2
|
F:ASP156
|
4.9
|
34.2
|
1.0
|
|
CA
|
F:VAL157
|
5.0
|
40.4
|
1.0
|
|
HA
|
F:TYR158
|
5.0
|
35.0
|
1.0
|
|
Calcium binding site 7 out
of 16 in 6y41
Go back to
Calcium Binding Sites List in 6y41
Calcium binding site 7 out
of 16 in the Fibrinogen-Like Globe Domain of Human ANGPTL2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Fibrinogen-Like Globe Domain of Human ANGPTL2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca402
b:33.4
occ:1.00
|
OD1
|
G:ASP156
|
2.2
|
29.9
|
1.0
|
|
O
|
G:GLY160
|
2.3
|
26.2
|
1.0
|
|
O
|
G:TYR158
|
2.3
|
29.3
|
1.0
|
|
OD2
|
G:ASP154
|
2.4
|
33.8
|
1.0
|
|
O
|
G:HOH512
|
2.4
|
40.1
|
1.0
|
|
OD1
|
G:ASP154
|
2.5
|
26.4
|
1.0
|
|
O
|
G:HOH643
|
2.5
|
36.4
|
1.0
|
|
CG
|
G:ASP154
|
2.8
|
23.4
|
1.0
|
|
CG
|
G:ASP156
|
3.3
|
31.1
|
1.0
|
|
C
|
G:GLY160
|
3.4
|
30.5
|
1.0
|
|
C
|
G:TYR158
|
3.4
|
23.9
|
1.0
|
|
HA
|
G:ASN161
|
3.6
|
31.2
|
1.0
|
|
H
|
G:ASP156
|
3.6
|
29.8
|
1.0
|
|
H
|
G:TYR158
|
3.7
|
25.1
|
1.0
|
|
OD2
|
G:ASP156
|
3.8
|
33.2
|
1.0
|
|
O
|
G:ASP156
|
3.8
|
37.5
|
1.0
|
|
HB3
|
G:TYR158
|
3.9
|
28.7
|
1.0
|
|
N
|
G:TYR158
|
4.1
|
20.9
|
1.0
|
|
C
|
G:ASP156
|
4.1
|
28.9
|
1.0
|
|
N
|
G:GLY160
|
4.2
|
28.2
|
1.0
|
|
CA
|
G:TYR158
|
4.2
|
25.9
|
1.0
|
|
C
|
G:THR159
|
4.2
|
31.0
|
1.0
|
|
HA
|
G:THR159
|
4.2
|
29.1
|
1.0
|
|
N
|
G:ASP156
|
4.3
|
24.8
|
1.0
|
|
CB
|
G:ASP154
|
4.3
|
29.4
|
1.0
|
|
N
|
G:ASN161
|
4.3
|
25.9
|
1.0
|
|
CA
|
G:GLY160
|
4.3
|
26.4
|
1.0
|
|
CA
|
G:ASN161
|
4.4
|
26.0
|
1.0
|
|
N
|
G:THR159
|
4.4
|
23.0
|
1.0
|
|
CB
|
G:ASP156
|
4.5
|
24.7
|
1.0
|
|
H
|
G:GLY160
|
4.5
|
33.8
|
1.0
|
|
CA
|
G:ASP156
|
4.5
|
21.7
|
1.0
|
|
CB
|
G:TYR158
|
4.5
|
23.9
|
1.0
|
|
CA
|
G:THR159
|
4.5
|
24.3
|
1.0
|
|
O
|
G:THR159
|
4.6
|
29.4
|
1.0
|
|
HB3
|
G:ASP154
|
4.6
|
35.3
|
1.0
|
|
HA2
|
G:GLY160
|
4.6
|
31.7
|
1.0
|
|
HD2
|
G:TYR158
|
4.7
|
39.1
|
1.0
|
|
H
|
G:CYS162
|
4.7
|
30.6
|
1.0
|
|
HB2
|
G:ASP154
|
4.7
|
35.3
|
1.0
|
|
N
|
G:VAL157
|
4.8
|
28.3
|
1.0
|
|
C
|
G:VAL157
|
4.9
|
33.8
|
1.0
|
|
HA
|
G:VAL157
|
5.0
|
31.6
|
1.0
|
|
HB2
|
G:ASN161
|
5.0
|
33.1
|
1.0
|
|
HB2
|
G:ASP156
|
5.0
|
29.7
|
1.0
|
|
Calcium binding site 8 out
of 16 in 6y41
Go back to
Calcium Binding Sites List in 6y41
Calcium binding site 8 out
of 16 in the Fibrinogen-Like Globe Domain of Human ANGPTL2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Fibrinogen-Like Globe Domain of Human ANGPTL2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca402
b:24.9
occ:1.00
|
OD1
|
H:ASP156
|
2.2
|
35.2
|
1.0
|
|
O
|
H:GLY160
|
2.2
|
26.3
|
1.0
|
|
O
|
H:TYR158
|
2.3
|
26.2
|
1.0
|
|
OD2
|
H:ASP154
|
2.3
|
32.0
|
1.0
|
|
OD1
|
H:ASP154
|
2.4
|
29.6
|
1.0
|
|
O
|
H:HOH540
|
2.5
|
36.3
|
1.0
|
|
O
|
H:HOH508
|
2.5
|
42.0
|
1.0
|
|
CG
|
H:ASP154
|
2.7
|
27.1
|
1.0
|
|
CG
|
H:ASP156
|
3.2
|
28.9
|
1.0
|
|
C
|
H:TYR158
|
3.4
|
31.5
|
1.0
|
|
C
|
H:GLY160
|
3.4
|
26.7
|
1.0
|
|
O
|
H:ASP156
|
3.6
|
39.3
|
1.0
|
|
HA
|
H:ASN161
|
3.6
|
30.5
|
1.0
|
|
H
|
H:ASP156
|
3.7
|
31.8
|
1.0
|
|
H
|
H:TYR158
|
3.7
|
33.8
|
1.0
|
|
OD2
|
H:ASP156
|
3.7
|
27.9
|
1.0
|
|
HB3
|
H:TYR158
|
3.9
|
29.9
|
1.0
|
|
N
|
H:TYR158
|
4.1
|
28.1
|
1.0
|
|
C
|
H:ASP156
|
4.1
|
25.2
|
1.0
|
|
C
|
H:THR159
|
4.2
|
33.0
|
1.0
|
|
HA
|
H:THR159
|
4.2
|
37.6
|
1.0
|
|
CA
|
H:TYR158
|
4.2
|
27.4
|
1.0
|
|
N
|
H:GLY160
|
4.2
|
31.4
|
1.0
|
|
CB
|
H:ASP154
|
4.2
|
28.6
|
1.0
|
|
N
|
H:ASN161
|
4.3
|
28.0
|
1.0
|
|
N
|
H:ASP156
|
4.3
|
26.5
|
1.0
|
|
CA
|
H:GLY160
|
4.3
|
31.3
|
1.0
|
|
N
|
H:THR159
|
4.4
|
29.6
|
1.0
|
|
CA
|
H:ASN161
|
4.4
|
25.4
|
1.0
|
|
CB
|
H:ASP156
|
4.5
|
28.1
|
1.0
|
|
O
|
H:HOH615
|
4.5
|
41.5
|
1.0
|
|
CA
|
H:THR159
|
4.5
|
31.3
|
1.0
|
|
H
|
H:GLY160
|
4.5
|
37.6
|
1.0
|
|
O
|
H:THR159
|
4.5
|
33.3
|
1.0
|
|
CB
|
H:TYR158
|
4.5
|
24.9
|
1.0
|
|
CA
|
H:ASP156
|
4.5
|
24.6
|
1.0
|
|
HB2
|
H:ASP154
|
4.6
|
34.3
|
1.0
|
|
HB3
|
H:ASP154
|
4.6
|
34.3
|
1.0
|
|
HA2
|
H:GLY160
|
4.6
|
37.5
|
1.0
|
|
HD2
|
H:TYR158
|
4.6
|
35.4
|
1.0
|
|
O
|
H:HOH552
|
4.7
|
50.0
|
1.0
|
|
H
|
H:CYS162
|
4.7
|
30.2
|
1.0
|
|
N
|
H:VAL157
|
4.9
|
31.2
|
1.0
|
|
C
|
H:VAL157
|
4.9
|
35.5
|
1.0
|
|
HB2
|
H:ASP156
|
4.9
|
33.7
|
1.0
|
|
HB2
|
H:ASN161
|
5.0
|
39.0
|
1.0
|
|
Calcium binding site 9 out
of 16 in 6y41
Go back to
Calcium Binding Sites List in 6y41
Calcium binding site 9 out
of 16 in the Fibrinogen-Like Globe Domain of Human ANGPTL2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Fibrinogen-Like Globe Domain of Human ANGPTL2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca302
b:33.5
occ:1.00
|
O
|
I:TYR158
|
2.3
|
33.6
|
1.0
|
|
O
|
I:GLY160
|
2.3
|
32.3
|
1.0
|
|
OD1
|
I:ASP156
|
2.3
|
26.2
|
1.0
|
|
O
|
I:HOH417
|
2.4
|
34.7
|
1.0
|
|
O
|
I:HOH424
|
2.4
|
36.2
|
1.0
|
|
OD2
|
I:ASP154
|
2.5
|
34.4
|
1.0
|
|
OD1
|
I:ASP154
|
2.6
|
35.8
|
1.0
|
|
CG
|
I:ASP154
|
2.9
|
39.8
|
1.0
|
|
CG
|
I:ASP156
|
3.3
|
28.8
|
1.0
|
|
C
|
I:TYR158
|
3.4
|
30.9
|
1.0
|
|
C
|
I:GLY160
|
3.4
|
33.5
|
1.0
|
|
H
|
I:TYR158
|
3.5
|
38.8
|
1.0
|
|
HA
|
I:ASN161
|
3.5
|
32.1
|
1.0
|
|
OD2
|
I:ASP156
|
3.6
|
31.0
|
1.0
|
|
HB3
|
I:TYR158
|
3.8
|
32.7
|
1.0
|
|
H
|
I:ASP156
|
3.9
|
35.3
|
1.0
|
|
N
|
I:TYR158
|
4.0
|
32.3
|
1.0
|
|
O
|
I:THR159
|
4.0
|
41.2
|
1.0
|
|
O
|
I:ASP156
|
4.0
|
39.7
|
1.0
|
|
C
|
I:THR159
|
4.0
|
33.7
|
1.0
|
|
CA
|
I:TYR158
|
4.2
|
32.0
|
1.0
|
|
N
|
I:ASN161
|
4.2
|
31.2
|
1.0
|
|
CA
|
I:ASN161
|
4.3
|
26.8
|
1.0
|
|
C
|
I:ASP156
|
4.3
|
27.9
|
1.0
|
|
N
|
I:GLY160
|
4.3
|
31.4
|
1.0
|
|
HA
|
I:THR159
|
4.3
|
48.3
|
1.0
|
|
O
|
I:HOH498
|
4.3
|
49.6
|
1.0
|
|
CB
|
I:ASP154
|
4.4
|
28.6
|
1.0
|
|
N
|
I:THR159
|
4.4
|
37.7
|
1.0
|
|
CA
|
I:GLY160
|
4.4
|
32.0
|
1.0
|
|
N
|
I:ASP156
|
4.5
|
29.4
|
1.0
|
|
CB
|
I:TYR158
|
4.5
|
27.2
|
1.0
|
|
CA
|
I:THR159
|
4.5
|
40.2
|
1.0
|
|
CB
|
I:ASP156
|
4.5
|
27.7
|
1.0
|
|
H
|
I:CYS162
|
4.6
|
33.2
|
1.0
|
|
CA
|
I:ASP156
|
4.7
|
23.3
|
1.0
|
|
HB3
|
I:ASP154
|
4.7
|
34.3
|
1.0
|
|
H
|
I:GLY160
|
4.8
|
37.7
|
1.0
|
|
HA2
|
I:GLY160
|
4.8
|
38.4
|
1.0
|
|
HB2
|
I:ASP154
|
4.8
|
34.3
|
1.0
|
|
N
|
I:VAL157
|
4.8
|
32.2
|
1.0
|
|
HB2
|
I:ASN161
|
4.9
|
33.7
|
1.0
|
|
C
|
I:VAL157
|
4.9
|
35.3
|
1.0
|
|
O
|
I:HOH430
|
4.9
|
39.2
|
1.0
|
|
HA
|
I:VAL157
|
4.9
|
38.8
|
1.0
|
|
Calcium binding site 10 out
of 16 in 6y41
Go back to
Calcium Binding Sites List in 6y41
Calcium binding site 10 out
of 16 in the Fibrinogen-Like Globe Domain of Human ANGPTL2
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Fibrinogen-Like Globe Domain of Human ANGPTL2 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca301
b:32.0
occ:1.00
|
O
|
J:TYR158
|
2.3
|
35.4
|
1.0
|
|
O
|
J:HOH404
|
2.3
|
41.0
|
1.0
|
|
OD2
|
J:ASP154
|
2.3
|
35.6
|
1.0
|
|
OD1
|
J:ASP156
|
2.3
|
31.5
|
1.0
|
|
O
|
J:GLY160
|
2.4
|
35.5
|
1.0
|
|
OD1
|
J:ASP154
|
2.5
|
36.1
|
1.0
|
|
O
|
J:HOH443
|
2.6
|
40.4
|
1.0
|
|
CG
|
J:ASP154
|
2.7
|
39.7
|
1.0
|
|
CG
|
J:ASP156
|
3.3
|
33.6
|
1.0
|
|
C
|
J:TYR158
|
3.4
|
39.6
|
1.0
|
|
C
|
J:GLY160
|
3.4
|
30.3
|
1.0
|
|
HA
|
J:ASN161
|
3.5
|
38.8
|
1.0
|
|
H
|
J:TYR158
|
3.5
|
44.1
|
1.0
|
|
OD2
|
J:ASP156
|
3.7
|
31.7
|
1.0
|
|
H
|
J:ASP156
|
3.8
|
37.0
|
1.0
|
|
HB3
|
J:TYR158
|
3.8
|
38.6
|
1.0
|
|
O
|
J:ASP156
|
3.9
|
37.5
|
1.0
|
|
N
|
J:TYR158
|
4.0
|
36.7
|
1.0
|
|
O
|
J:THR159
|
4.0
|
43.0
|
1.0
|
|
C
|
J:THR159
|
4.1
|
33.9
|
1.0
|
|
CA
|
J:TYR158
|
4.2
|
35.6
|
1.0
|
|
N
|
J:ASN161
|
4.2
|
29.6
|
1.0
|
|
CB
|
J:ASP154
|
4.2
|
32.9
|
1.0
|
|
C
|
J:ASP156
|
4.2
|
29.5
|
1.0
|
|
CA
|
J:ASN161
|
4.2
|
32.4
|
1.0
|
|
O
|
J:HOH515
|
4.3
|
49.5
|
1.0
|
|
N
|
J:GLY160
|
4.4
|
33.0
|
1.0
|
|
N
|
J:ASP156
|
4.4
|
30.8
|
1.0
|
|
CA
|
J:GLY160
|
4.4
|
31.8
|
1.0
|
|
N
|
J:THR159
|
4.5
|
36.4
|
1.0
|
|
CB
|
J:ASP156
|
4.5
|
26.6
|
1.0
|
|
CB
|
J:TYR158
|
4.5
|
32.2
|
1.0
|
|
HB3
|
J:ASP154
|
4.5
|
39.4
|
1.0
|
|
HA
|
J:THR159
|
4.5
|
42.1
|
1.0
|
|
H
|
J:CYS162
|
4.6
|
36.6
|
1.0
|
|
CA
|
J:ASP156
|
4.6
|
32.2
|
1.0
|
|
HB2
|
J:ASP154
|
4.6
|
39.4
|
1.0
|
|
CA
|
J:THR159
|
4.6
|
35.1
|
1.0
|
|
HA2
|
J:GLY160
|
4.7
|
38.2
|
1.0
|
|
HB2
|
J:ASN161
|
4.8
|
39.9
|
1.0
|
|
H
|
J:GLY160
|
4.8
|
39.6
|
1.0
|
|
N
|
J:VAL157
|
4.9
|
34.4
|
1.0
|
|
C
|
J:VAL157
|
4.9
|
39.9
|
1.0
|
|
H
|
J:ASN161
|
5.0
|
35.6
|
1.0
|
|
HA
|
J:VAL157
|
5.0
|
39.7
|
1.0
|
|
HB2
|
J:ASP156
|
5.0
|
32.0
|
1.0
|
|
Reference:
J.A.Coker,
T.Krojer,
J.M.Mutisya,
C.H.Arrowsmith,
C.Bountra,
K.S.Midwood,
W.W.Yue,
B.D.Marsden,
Structural Genomics Consortium (Sgc).
Fibrinogen-Like Globe Domain of Human ANGPTL2 To Be Published.
Page generated: Thu Jul 18 22:21:08 2024
|
