Calcium in PDB 7esy: Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cida and CIDBND1-ND2 From Wpip

Protein crystallography data

The structure of Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cida and CIDBND1-ND2 From Wpip, PDB code: 7esy was solved by Y.J.Xiao, W.Wang, X.Chen, X.Y.Ji, H.T.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.59 / 2.30
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 102.361, 154.556, 83.393, 90, 90, 90
R / Rfree (%) 21.7 / 24.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cida and CIDBND1-ND2 From Wpip (pdb code 7esy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cida and CIDBND1-ND2 From Wpip, PDB code: 7esy:

Calcium binding site 1 out of 1 in 7esy

Go back to Calcium Binding Sites List in 7esy
Calcium binding site 1 out of 1 in the Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cida and CIDBND1-ND2 From Wpip


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Complex Formed By Wolbachia Cytoplasmic Incompatibility Factors Cida and CIDBND1-ND2 From Wpip within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1201

b:60.7
occ:1.00
OE2 B:GLU257 2.4 57.8 1.0
OD1 A:ASP400 2.4 70.2 1.0
O B:GLY253 2.5 65.8 1.0
O A:HOH1302 2.5 60.2 1.0
O B:HOH1331 2.6 56.9 1.0
O A:HOH1305 2.6 71.9 1.0
C B:GLY253 3.4 62.4 1.0
CG A:ASP400 3.5 69.0 1.0
CD B:GLU257 3.6 56.9 1.0
CA B:GLY253 3.8 60.0 1.0
OD2 A:ASP400 3.9 69.8 1.0
OG A:SER346 4.1 56.7 1.0
OE1 B:GLU257 4.1 58.1 1.0
N B:ASP254 4.4 61.0 1.0
OG1 A:THR342 4.5 58.2 1.0
O A:LEU396 4.6 59.4 1.0
CG B:GLU257 4.8 53.1 1.0
CA B:ASP254 4.8 59.2 1.0
CB B:GLU257 4.8 48.6 1.0
CB A:ASP400 4.8 65.9 1.0
CB A:SER346 4.9 56.4 1.0
O A:TYR341 4.9 59.3 1.0
OD1 B:ASP254 4.9 65.2 1.0

Reference:

Y.Xiao, H.Chen, H.Wang, M.Zhang, X.Chen, J.M.Berk, L.Zhang, Y.Wei, W.Li, W.Cui, F.Wang, Q.Wang, C.Cui, T.Li, C.Chen, S.Ye, L.Zhang, X.Ji, J.Huang, W.Wang, Z.Wang, M.Hochstrasser, H.Yang. Structural and Mechanistic Insights Into the Complexes Formed By Wolbachia Cytoplasmic Incompatibility Factors. Proc.Natl.Acad.Sci.Usa V. 118 2021.
ISSN: ESSN 1091-6490
PubMed: 34620712
DOI: 10.1073/PNAS.2107699118
Page generated: Thu Nov 25 08:12:04 2021

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