Calcium in PDB 7jgz: Protocadherin GAMMAC4 EC1-4 Crystal Structure
Protein crystallography data
The structure of Protocadherin GAMMAC4 EC1-4 Crystal Structure, PDB code: 7jgz
was solved by
K.M.Goodman,
S.Mannepalli,
B.Honig,
L.Shapiro,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
38.50 /
3.51
|
|
Space group
|
I 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
75.22,
115.68,
194.48,
90,
90,
90
|
|
R / Rfree (%)
|
22.3 /
27.1
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Protocadherin GAMMAC4 EC1-4 Crystal Structure
(pdb code 7jgz). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the
Protocadherin GAMMAC4 EC1-4 Crystal Structure, PDB code: 7jgz:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Calcium binding site 1 out
of 9 in 7jgz
Go back to
Calcium Binding Sites List in 7jgz
Calcium binding site 1 out
of 9 in the Protocadherin GAMMAC4 EC1-4 Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Protocadherin GAMMAC4 EC1-4 Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca503
b:61.3
occ:1.00
|
OD1
|
A:ASP62
|
2.5
|
127.7
|
1.0
|
|
OE2
|
A:GLU9
|
2.6
|
122.3
|
1.0
|
|
OE1
|
A:GLU64
|
2.6
|
112.3
|
1.0
|
|
OD2
|
A:ASP99
|
2.8
|
99.0
|
1.0
|
|
CG
|
A:ASP62
|
3.3
|
124.0
|
1.0
|
|
OE1
|
A:GLU8
|
3.4
|
105.2
|
1.0
|
|
NE2
|
A:HIS100
|
3.4
|
87.3
|
1.0
|
|
CG
|
A:ASP99
|
3.6
|
98.8
|
1.0
|
|
CD
|
A:GLU9
|
3.6
|
125.2
|
1.0
|
|
OD1
|
A:ASP99
|
3.8
|
95.0
|
1.0
|
|
CD
|
A:GLU64
|
3.8
|
111.2
|
1.0
|
|
OD2
|
A:ASP62
|
3.9
|
124.7
|
1.0
|
|
CD2
|
A:HIS100
|
4.0
|
83.1
|
1.0
|
|
CD
|
A:GLU8
|
4.2
|
109.8
|
1.0
|
|
CG
|
A:GLU9
|
4.2
|
124.6
|
1.0
|
|
CA
|
A:CA504
|
4.3
|
79.8
|
1.0
|
|
CB
|
A:ASP62
|
4.4
|
114.7
|
1.0
|
|
CB
|
A:GLU64
|
4.4
|
96.6
|
1.0
|
|
OE2
|
A:GLU8
|
4.5
|
108.6
|
1.0
|
|
CG
|
A:GLU64
|
4.5
|
104.8
|
1.0
|
|
CE1
|
A:HIS100
|
4.5
|
86.1
|
1.0
|
|
OE1
|
A:GLU9
|
4.6
|
127.9
|
1.0
|
|
CA
|
A:ASP62
|
4.7
|
102.4
|
1.0
|
|
OE2
|
A:GLU64
|
4.7
|
114.2
|
1.0
|
|
N
|
A:GLU64
|
4.9
|
105.1
|
1.0
|
|
CB
|
A:ASP99
|
5.0
|
101.6
|
1.0
|
|
Calcium binding site 2 out
of 9 in 7jgz
Go back to
Calcium Binding Sites List in 7jgz
Calcium binding site 2 out
of 9 in the Protocadherin GAMMAC4 EC1-4 Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Protocadherin GAMMAC4 EC1-4 Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca504
b:79.8
occ:1.00
|
OE2
|
A:GLU8
|
2.3
|
108.6
|
1.0
|
|
OE2
|
A:GLU64
|
2.3
|
114.2
|
1.0
|
|
OD1
|
A:ASP99
|
2.4
|
95.0
|
1.0
|
|
OD1
|
A:ASP132
|
2.5
|
107.2
|
1.0
|
|
O
|
A:VAL97
|
2.5
|
129.0
|
1.0
|
|
OD1
|
A:ASP96
|
2.6
|
84.6
|
1.0
|
|
OE1
|
A:GLU64
|
2.8
|
112.3
|
1.0
|
|
CD
|
A:GLU64
|
2.8
|
111.2
|
1.0
|
|
CD
|
A:GLU8
|
3.3
|
109.8
|
1.0
|
|
CG
|
A:ASP132
|
3.4
|
106.3
|
1.0
|
|
CG
|
A:ASP99
|
3.5
|
98.8
|
1.0
|
|
CG
|
A:ASP96
|
3.6
|
94.0
|
1.0
|
|
C
|
A:VAL97
|
3.7
|
127.6
|
1.0
|
|
OE1
|
A:GLU8
|
3.8
|
105.2
|
1.0
|
|
CD2
|
A:HIS100
|
4.0
|
83.1
|
1.0
|
|
OD2
|
A:ASP132
|
4.0
|
104.2
|
1.0
|
|
N
|
A:VAL97
|
4.0
|
107.6
|
1.0
|
|
OD2
|
A:ASP99
|
4.0
|
99.0
|
1.0
|
|
N
|
A:ASP99
|
4.1
|
99.3
|
1.0
|
|
CG
|
A:GLU64
|
4.1
|
104.8
|
1.0
|
|
OD2
|
A:ASP96
|
4.2
|
91.7
|
1.0
|
|
CA
|
A:CA503
|
4.3
|
61.3
|
1.0
|
|
CG2
|
A:VAL97
|
4.4
|
95.8
|
1.0
|
|
CB
|
A:ASP132
|
4.4
|
104.7
|
1.0
|
|
CA
|
A:VAL97
|
4.4
|
113.9
|
1.0
|
|
CG
|
A:GLU8
|
4.5
|
113.8
|
1.0
|
|
CA
|
A:ASP132
|
4.6
|
102.5
|
1.0
|
|
N
|
A:ASN98
|
4.7
|
119.9
|
1.0
|
|
CB
|
A:ASP99
|
4.7
|
101.6
|
1.0
|
|
CB
|
A:ASP96
|
4.8
|
102.7
|
1.0
|
|
NE2
|
A:HIS100
|
4.8
|
87.3
|
1.0
|
|
CA
|
A:ASP99
|
4.8
|
95.1
|
1.0
|
|
C
|
A:ASP96
|
4.8
|
107.3
|
1.0
|
|
CA
|
A:ASP96
|
4.9
|
106.2
|
1.0
|
|
CA
|
A:ASN98
|
4.9
|
109.2
|
1.0
|
|
N
|
A:HIS100
|
5.0
|
85.9
|
1.0
|
|
CG
|
A:HIS100
|
5.0
|
78.6
|
1.0
|
|
Calcium binding site 3 out
of 9 in 7jgz
Go back to
Calcium Binding Sites List in 7jgz
Calcium binding site 3 out
of 9 in the Protocadherin GAMMAC4 EC1-4 Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Protocadherin GAMMAC4 EC1-4 Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca505
b:63.3
occ:1.00
|
O
|
A:HIS100
|
2.3
|
85.4
|
1.0
|
|
OD2
|
A:ASP130
|
2.4
|
77.9
|
1.0
|
|
OD1
|
A:ASN98
|
2.5
|
108.9
|
1.0
|
|
OD1
|
A:ASP130
|
2.5
|
83.3
|
1.0
|
|
O
|
A:ASN136
|
2.5
|
72.7
|
1.0
|
|
OD2
|
A:ASP132
|
2.7
|
104.2
|
1.0
|
|
CG
|
A:ASP130
|
2.8
|
77.7
|
1.0
|
|
OD2
|
A:ASP187
|
2.9
|
109.2
|
1.0
|
|
C
|
A:HIS100
|
3.5
|
87.2
|
1.0
|
|
CG
|
A:ASP132
|
3.6
|
106.3
|
1.0
|
|
CG
|
A:ASP187
|
3.6
|
105.8
|
1.0
|
|
CG
|
A:ASN98
|
3.7
|
109.7
|
1.0
|
|
C
|
A:ASN136
|
3.7
|
73.6
|
1.0
|
|
CB
|
A:ASP187
|
3.8
|
99.1
|
1.0
|
|
CB
|
A:ASP132
|
3.9
|
104.7
|
1.0
|
|
CB
|
A:HIS100
|
4.3
|
74.6
|
1.0
|
|
CA
|
A:HIS100
|
4.3
|
82.8
|
1.0
|
|
CB
|
A:ASP130
|
4.3
|
73.6
|
1.0
|
|
ND2
|
A:ASN98
|
4.4
|
108.3
|
1.0
|
|
N
|
A:HIS100
|
4.4
|
85.9
|
1.0
|
|
CB
|
A:ASN136
|
4.5
|
81.7
|
1.0
|
|
CA
|
A:ASN136
|
4.5
|
78.6
|
1.0
|
|
N
|
A:ALA101
|
4.5
|
88.7
|
1.0
|
|
OD1
|
A:ASP187
|
4.5
|
109.5
|
1.0
|
|
OD1
|
A:ASP132
|
4.6
|
107.2
|
1.0
|
|
N
|
A:SER137
|
4.7
|
76.3
|
1.0
|
|
CA
|
A:ALA101
|
4.7
|
82.9
|
1.0
|
|
CA
|
A:ASN98
|
4.8
|
109.2
|
1.0
|
|
CD
|
A:PRO102
|
4.8
|
81.6
|
1.0
|
|
CA
|
A:SER137
|
4.8
|
83.7
|
1.0
|
|
CB
|
A:ASN98
|
4.8
|
110.4
|
1.0
|
|
C
|
A:ASN98
|
5.0
|
104.6
|
1.0
|
|
C
|
A:ALA101
|
5.0
|
80.2
|
1.0
|
|
Calcium binding site 4 out
of 9 in 7jgz
Go back to
Calcium Binding Sites List in 7jgz
Calcium binding site 4 out
of 9 in the Protocadherin GAMMAC4 EC1-4 Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Protocadherin GAMMAC4 EC1-4 Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca506
b:65.9
occ:1.00
|
OD2
|
A:ASP208
|
2.1
|
94.6
|
1.0
|
|
OD1
|
A:ASP172
|
2.8
|
64.4
|
1.0
|
|
CG
|
A:ASP208
|
3.0
|
85.8
|
1.0
|
|
OE1
|
A:GLU174
|
3.1
|
75.7
|
1.0
|
|
OE2
|
A:GLU115
|
3.1
|
69.5
|
1.0
|
|
CG
|
A:ASP172
|
3.4
|
67.0
|
1.0
|
|
OD1
|
A:ASP208
|
3.5
|
87.1
|
1.0
|
|
CD
|
A:GLU115
|
3.6
|
68.8
|
1.0
|
|
OD2
|
A:ASP172
|
3.7
|
70.2
|
1.0
|
|
OE1
|
A:GLU115
|
4.0
|
71.3
|
1.0
|
|
ND2
|
A:ASN209
|
4.0
|
74.8
|
1.0
|
|
CB
|
A:ASP208
|
4.1
|
82.9
|
1.0
|
|
CD
|
A:GLU174
|
4.3
|
79.0
|
1.0
|
|
CB
|
A:ASP172
|
4.3
|
67.5
|
1.0
|
|
CG
|
A:GLU115
|
4.4
|
65.1
|
1.0
|
|
CA
|
A:CA507
|
4.5
|
46.0
|
1.0
|
|
CA
|
A:ASP172
|
4.6
|
67.9
|
1.0
|
|
CB
|
A:GLU174
|
4.9
|
74.3
|
1.0
|
|
CG
|
A:GLU174
|
5.0
|
81.4
|
1.0
|
|
CG
|
A:ASN209
|
5.0
|
71.3
|
1.0
|
|
Calcium binding site 5 out
of 9 in 7jgz
Go back to
Calcium Binding Sites List in 7jgz
Calcium binding site 5 out
of 9 in the Protocadherin GAMMAC4 EC1-4 Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Protocadherin GAMMAC4 EC1-4 Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca507
b:46.0
occ:1.00
|
OE2
|
A:GLU174
|
2.3
|
78.4
|
1.0
|
|
OD1
|
A:ASP208
|
2.3
|
87.1
|
1.0
|
|
OD1
|
A:ASP205
|
2.4
|
63.7
|
1.0
|
|
OE1
|
A:GLU174
|
2.5
|
75.7
|
1.0
|
|
O
|
A:VAL206
|
2.5
|
83.9
|
1.0
|
|
CD
|
A:GLU174
|
2.7
|
79.0
|
1.0
|
|
OD1
|
A:ASP241
|
2.7
|
90.3
|
1.0
|
|
OE1
|
A:GLU115
|
2.7
|
71.3
|
1.0
|
|
CG
|
A:ASP241
|
3.3
|
89.1
|
1.0
|
|
CG
|
A:ASP208
|
3.4
|
85.8
|
1.0
|
|
CG
|
A:ASP205
|
3.5
|
76.8
|
1.0
|
|
CD
|
A:GLU115
|
3.6
|
68.8
|
1.0
|
|
ND2
|
A:ASN209
|
3.6
|
74.8
|
1.0
|
|
OE2
|
A:GLU115
|
3.7
|
69.5
|
1.0
|
|
C
|
A:VAL206
|
3.8
|
83.2
|
1.0
|
|
OD2
|
A:ASP241
|
3.8
|
88.2
|
1.0
|
|
OD2
|
A:ASP208
|
3.9
|
94.6
|
1.0
|
|
CG
|
A:GLU174
|
4.0
|
81.4
|
1.0
|
|
OD2
|
A:ASP205
|
4.1
|
80.2
|
1.0
|
|
N
|
A:ASP208
|
4.1
|
69.5
|
1.0
|
|
CB
|
A:ASP241
|
4.1
|
88.8
|
1.0
|
|
N
|
A:VAL206
|
4.1
|
61.7
|
1.0
|
|
CA
|
A:ASP241
|
4.4
|
83.0
|
1.0
|
|
NE
|
A:ARG173
|
4.5
|
70.8
|
1.0
|
|
CA
|
A:CA506
|
4.5
|
65.9
|
1.0
|
|
CA
|
A:VAL206
|
4.6
|
63.7
|
1.0
|
|
CB
|
A:ASP205
|
4.6
|
76.3
|
1.0
|
|
NH2
|
A:ARG173
|
4.6
|
77.1
|
1.0
|
|
CB
|
A:ASP208
|
4.7
|
82.9
|
1.0
|
|
N
|
A:ASN207
|
4.7
|
61.6
|
1.0
|
|
CA
|
A:ASN207
|
4.8
|
56.8
|
1.0
|
|
CA
|
A:ASP205
|
4.8
|
60.7
|
1.0
|
|
CA
|
A:ASP208
|
4.8
|
75.3
|
1.0
|
|
CG
|
A:ASN209
|
4.9
|
71.3
|
1.0
|
|
N
|
A:ASN209
|
4.9
|
63.4
|
1.0
|
|
C
|
A:ASP205
|
4.9
|
62.0
|
1.0
|
|
C
|
A:ASN207
|
5.0
|
60.0
|
1.0
|
|
Calcium binding site 6 out
of 9 in 7jgz
Go back to
Calcium Binding Sites List in 7jgz
Calcium binding site 6 out
of 9 in the Protocadherin GAMMAC4 EC1-4 Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Protocadherin GAMMAC4 EC1-4 Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca508
b:32.8
occ:1.00
|
OD1
|
A:ASP239
|
2.3
|
59.5
|
1.0
|
|
O
|
A:ASN209
|
2.3
|
63.4
|
1.0
|
|
O
|
A:SER245
|
2.4
|
45.4
|
1.0
|
|
ND2
|
A:ASN207
|
2.5
|
60.5
|
1.0
|
|
OD2
|
A:ASP239
|
2.6
|
57.1
|
1.0
|
|
OD2
|
A:ASP241
|
2.6
|
88.2
|
1.0
|
|
CG
|
A:ASP239
|
2.8
|
57.0
|
1.0
|
|
OD2
|
A:ASP295
|
2.9
|
48.1
|
1.0
|
|
CG
|
A:ASP241
|
3.2
|
89.1
|
1.0
|
|
CB
|
A:ASP241
|
3.5
|
88.8
|
1.0
|
|
C
|
A:ASN209
|
3.5
|
66.7
|
1.0
|
|
C
|
A:SER245
|
3.6
|
52.3
|
1.0
|
|
CG
|
A:ASP295
|
3.7
|
49.2
|
1.0
|
|
CG
|
A:ASN207
|
3.7
|
61.4
|
1.0
|
|
CB
|
A:ASP295
|
3.8
|
51.2
|
1.0
|
|
OD1
|
A:ASP241
|
4.2
|
90.3
|
1.0
|
|
CA
|
A:ASN209
|
4.2
|
64.3
|
1.0
|
|
OD1
|
A:ASN207
|
4.3
|
63.2
|
1.0
|
|
CB
|
A:ASN209
|
4.3
|
65.8
|
1.0
|
|
CB
|
A:ASP239
|
4.3
|
54.7
|
1.0
|
|
N
|
A:ASN209
|
4.3
|
63.4
|
1.0
|
|
N
|
A:GLY246
|
4.5
|
62.7
|
1.0
|
|
CA
|
A:SER245
|
4.5
|
54.4
|
1.0
|
|
N
|
A:ASP241
|
4.5
|
71.5
|
1.0
|
|
N
|
A:ALA210
|
4.5
|
72.0
|
1.0
|
|
CA
|
A:GLY246
|
4.6
|
70.2
|
1.0
|
|
CA
|
A:ASP241
|
4.6
|
83.0
|
1.0
|
|
CB
|
A:SER245
|
4.7
|
57.5
|
1.0
|
|
OD1
|
A:ASP295
|
4.7
|
50.1
|
1.0
|
|
CA
|
A:ALA210
|
4.7
|
73.5
|
1.0
|
|
CB
|
A:ASN207
|
4.8
|
59.4
|
1.0
|
|
CA
|
A:ASN207
|
4.9
|
56.8
|
1.0
|
|
C
|
A:ALA210
|
4.9
|
72.8
|
1.0
|
|
Calcium binding site 7 out
of 9 in 7jgz
Go back to
Calcium Binding Sites List in 7jgz
Calcium binding site 7 out
of 9 in the Protocadherin GAMMAC4 EC1-4 Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Protocadherin GAMMAC4 EC1-4 Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca509
b:42.7
occ:1.00
|
OD1
|
A:ASP280
|
2.4
|
81.7
|
1.0
|
|
OE1
|
A:GLU282
|
2.7
|
76.0
|
1.0
|
|
OD2
|
A:ASP316
|
2.8
|
76.4
|
1.0
|
|
ND2
|
A:ASN317
|
3.2
|
74.4
|
1.0
|
|
OE1
|
A:GLU224
|
3.3
|
72.4
|
1.0
|
|
CG
|
A:ASP280
|
3.3
|
79.9
|
1.0
|
|
CG
|
A:ASP316
|
3.4
|
77.2
|
1.0
|
|
OD1
|
A:ASP316
|
3.4
|
77.1
|
1.0
|
|
CD
|
A:GLU282
|
3.6
|
80.5
|
1.0
|
|
OD2
|
A:ASP280
|
3.7
|
86.5
|
1.0
|
|
CA
|
A:CA510
|
3.9
|
70.9
|
1.0
|
|
CG
|
A:ASN317
|
4.1
|
72.5
|
1.0
|
|
OD1
|
A:ASN317
|
4.2
|
79.3
|
1.0
|
|
CD
|
A:GLU224
|
4.2
|
72.8
|
1.0
|
|
CG
|
A:GLU282
|
4.3
|
87.0
|
1.0
|
|
CB
|
A:ASP280
|
4.4
|
75.6
|
1.0
|
|
CB
|
A:GLU282
|
4.4
|
87.9
|
1.0
|
|
OE2
|
A:GLU282
|
4.4
|
85.1
|
1.0
|
|
OE2
|
A:GLU224
|
4.5
|
76.3
|
1.0
|
|
CA
|
A:ASP280
|
4.5
|
77.5
|
1.0
|
|
CB
|
A:ASP316
|
4.7
|
72.7
|
1.0
|
|
N
|
A:GLU282
|
4.8
|
76.1
|
1.0
|
|
N
|
A:PHE281
|
4.9
|
78.1
|
1.0
|
|
Calcium binding site 8 out
of 9 in 7jgz
Go back to
Calcium Binding Sites List in 7jgz
Calcium binding site 8 out
of 9 in the Protocadherin GAMMAC4 EC1-4 Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Protocadherin GAMMAC4 EC1-4 Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca510
b:70.9
occ:1.00
|
OE2
|
A:GLU282
|
2.2
|
85.1
|
1.0
|
|
OE2
|
A:GLU224
|
2.3
|
76.3
|
1.0
|
|
OD1
|
A:ASP316
|
2.3
|
77.1
|
1.0
|
|
OD1
|
A:ASP349
|
2.4
|
81.9
|
1.0
|
|
O
|
A:VAL314
|
2.5
|
75.5
|
1.0
|
|
OD1
|
A:ASP313
|
2.6
|
76.4
|
1.0
|
|
OE1
|
A:GLU282
|
2.7
|
76.0
|
1.0
|
|
CD
|
A:GLU282
|
2.8
|
80.5
|
1.0
|
|
CD
|
A:GLU224
|
3.2
|
72.8
|
1.0
|
|
CG
|
A:ASP316
|
3.4
|
77.2
|
1.0
|
|
CG
|
A:ASP349
|
3.5
|
85.7
|
1.0
|
|
OE1
|
A:GLU224
|
3.6
|
72.4
|
1.0
|
|
C
|
A:VAL314
|
3.7
|
76.3
|
1.0
|
|
OD2
|
A:ASP316
|
3.8
|
76.4
|
1.0
|
|
ND2
|
A:ASN317
|
3.8
|
74.4
|
1.0
|
|
CG
|
A:ASP313
|
3.9
|
79.3
|
1.0
|
|
N
|
A:VAL314
|
3.9
|
68.7
|
1.0
|
|
CA
|
A:CA509
|
3.9
|
42.7
|
1.0
|
|
N
|
A:ASP316
|
4.2
|
64.1
|
1.0
|
|
CG
|
A:GLU282
|
4.2
|
87.0
|
1.0
|
|
CB
|
A:ASP349
|
4.3
|
91.4
|
1.0
|
|
OD2
|
A:ASP349
|
4.3
|
82.3
|
1.0
|
|
CA
|
A:VAL314
|
4.4
|
69.7
|
1.0
|
|
CG
|
A:GLU224
|
4.5
|
69.3
|
1.0
|
|
CA
|
A:ASP349
|
4.5
|
91.7
|
1.0
|
|
CB
|
A:ASP316
|
4.6
|
72.7
|
1.0
|
|
OD2
|
A:ASP313
|
4.6
|
79.0
|
1.0
|
|
CB
|
A:PHE281
|
4.7
|
82.0
|
1.0
|
|
N
|
A:ASN315
|
4.8
|
66.2
|
1.0
|
|
CA
|
A:ASP313
|
4.8
|
82.2
|
1.0
|
|
C
|
A:ASP313
|
4.8
|
76.7
|
1.0
|
|
CB
|
A:ASP313
|
4.8
|
85.6
|
1.0
|
|
CA
|
A:ASP316
|
4.9
|
64.8
|
1.0
|
|
CA
|
A:ASN315
|
4.9
|
64.7
|
1.0
|
|
Calcium binding site 9 out
of 9 in 7jgz
Go back to
Calcium Binding Sites List in 7jgz
Calcium binding site 9 out
of 9 in the Protocadherin GAMMAC4 EC1-4 Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Protocadherin GAMMAC4 EC1-4 Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca511
b:47.2
occ:1.00
|
O
|
A:ASN317
|
2.3
|
85.2
|
1.0
|
|
OD1
|
A:ASN315
|
2.3
|
79.3
|
1.0
|
|
O
|
A:ASN353
|
2.4
|
72.6
|
1.0
|
|
OD2
|
A:ASP347
|
2.5
|
100.8
|
1.0
|
|
OD2
|
A:ASP349
|
2.5
|
82.3
|
1.0
|
|
OD2
|
A:ASP400
|
2.6
|
103.0
|
1.0
|
|
OD1
|
A:ASP347
|
2.9
|
102.5
|
1.0
|
|
CG
|
A:ASP347
|
3.0
|
99.8
|
1.0
|
|
CG
|
A:ASN315
|
3.5
|
78.0
|
1.0
|
|
CG
|
A:ASP400
|
3.5
|
104.4
|
1.0
|
|
CG
|
A:ASP349
|
3.5
|
85.7
|
1.0
|
|
C
|
A:ASN317
|
3.5
|
82.7
|
1.0
|
|
C
|
A:ASN353
|
3.6
|
86.8
|
1.0
|
|
CB
|
A:ASP400
|
3.8
|
102.0
|
1.0
|
|
CB
|
A:ASP349
|
3.8
|
91.4
|
1.0
|
|
ND2
|
A:ASN315
|
4.0
|
75.0
|
1.0
|
|
CD1
|
A:LEU406
|
4.3
|
57.2
|
1.0
|
|
CA
|
A:ASN353
|
4.3
|
103.5
|
1.0
|
|
N
|
A:ASN317
|
4.4
|
65.9
|
1.0
|
|
CA
|
A:ASN317
|
4.4
|
70.6
|
1.0
|
|
N
|
A:ALA318
|
4.5
|
85.5
|
1.0
|
|
CB
|
A:ASN353
|
4.5
|
105.0
|
1.0
|
|
CB
|
A:ASP347
|
4.5
|
99.6
|
1.0
|
|
OD1
|
A:ASP400
|
4.5
|
107.5
|
1.0
|
|
N
|
A:GLY354
|
4.6
|
95.2
|
1.0
|
|
CA
|
A:ALA318
|
4.6
|
88.3
|
1.0
|
|
OD1
|
A:ASP349
|
4.6
|
81.9
|
1.0
|
|
CA
|
A:GLY354
|
4.6
|
105.1
|
1.0
|
|
CB
|
A:ASN317
|
4.7
|
64.7
|
1.0
|
|
CB
|
A:ASN315
|
4.7
|
72.9
|
1.0
|
|
CA
|
A:ASN315
|
4.8
|
64.7
|
1.0
|
|
N
|
A:ASP349
|
5.0
|
93.0
|
1.0
|
|
C
|
A:ALA318
|
5.0
|
89.7
|
1.0
|
|
Reference:
K.M.Goodman,
P.S.Katsamba,
R.Rubinstein,
G.Ahlsen,
F.Bahna,
S.Mannepalli,
L.Shapiro,
B.Honig.
How Clustered Protocadherin Binding Specificity Is Tuned For Neuronal Self/Non-Self-Recognition To Be Published.
Page generated: Fri Jul 19 00:58:34 2024
|
