Calcium in PDB 7jvs: Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide

The structure of Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide, PDB code: 7jvs was solved by H.T.Wright, D.Peterson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.84 / 2.30
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	52.552, 56.824, 130.278, 90, 90, 90
R / Rfree (%)	22.4 / 26.4

The structure of Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide also contains other interesting chemical elements:

Nickel

(Ni)

1 atom

The binding sites of Calcium atom in the Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide (pdb code 7jvs). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide, PDB code: 7jvs:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:79.3 occ:1.00 O B:LEU51 2.5 62.7 1.0 OE1 B:GLU78 2.7 55.7 1.0 OE2 B:GLU78 3.0 59.4 1.0 CD B:GLU78 3.3 45.7 1.0 C B:LEU51 3.8 52.5 1.0 HA B:THR52 3.8 55.6 1.0 HB3 B:LEU51 4.3 49.2 1.0 HD13 D:LEU81 4.3 47.3 1.0 HG22 B:THR52 4.3 58.8 1.0 HA B:LEU51 4.5 57.3 1.0 CA B:THR52 4.6 46.4 1.0 N B:THR52 4.6 43.4 1.0 CA B:LEU51 4.7 47.7 1.0 CG B:GLU78 4.7 41.1 1.0 CB B:LEU51 5.0 41.0 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca201 b:88.3 occ:1.00 O D:HOH310 2.5 44.8 1.0 OXT D:LYS106 2.7 70.4 1.0 O D:VAL8 2.8 54.5 1.0 O D:LYS106 3.0 47.2 1.0 C D:LYS106 3.3 53.4 1.0 HG23 D:THR7 3.8 66.5 1.0 C D:VAL8 4.0 49.1 1.0 H D:VAL8 4.1 73.1 1.0 HA D:ASN9 4.1 64.2 1.0 HG22 D:THR7 4.1 66.5 1.0 CG2 D:THR7 4.4 55.4 1.0 N D:VAL8 4.6 61.0 1.0 HB D:VAL8 4.8 52.2 1.0 CA D:LYS106 4.8 61.5 1.0 HG21 D:THR7 4.9 66.5 1.0 CA D:ASN9 4.9 53.5 1.0 N D:ASN9 4.9 63.1 1.0 CA D:VAL8 4.9 56.3 1.0 HA D:THR7 5.0 43.3 1.0

H.T.Wright, D.Peterson, G.Christie. Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide To Be Published.