Atomistry » Calcium » PDB 7kld-7l6g » 7l3o
Atomistry »
  Calcium »
    PDB 7kld-7l6g »
      7l3o »

Calcium in PDB 7l3o: Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II

Enzymatic activity of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II

All present enzymatic activity of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II:
6.1.1.3;

Protein crystallography data

The structure of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II, PDB code: 7l3o was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.26 / 2.10
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 65.73, 67.45, 143.18, 91.59, 97.53, 120.78
R / Rfree (%) 17.8 / 21.3

Other elements in 7l3o:

The structure of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II (pdb code 7l3o). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II, PDB code: 7l3o:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7l3o

Go back to Calcium Binding Sites List in 7l3o
Calcium binding site 1 out of 2 in the Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca801

b:70.0
occ:1.00
 O D:HOH907 2.3 45.2 1.0
OD1 A:ASP371 2.5 40.9 1.0
O A:HOH968 2.6 48.8 1.0
OD2 A:ASP371 2.8 36.8 1.0
CG A:ASP371 3.0 39.0 1.0
O D:HOH1046 3.7 44.5 1.0
NH1 A:ARG374 4.2 41.3 1.0
O D:HOH984 4.2 38.5 1.0
O A:ASN367 4.5 30.3 1.0
CB A:ASP371 4.6 31.8 1.0
CB A:ASN367 4.6 28.9 1.0
OD1 D:ASP371 4.8 31.1 1.0
O A:HOH1118 4.8 46.6 1.0

Calcium binding site 2 out of 2 in 7l3o

Go back to Calcium Binding Sites List in 7l3o
Calcium binding site 2 out of 2 in the Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca801

b:68.3
occ:1.00
 O B:HOH932 2.5 42.5 1.0
O C:HOH913 2.6 45.5 1.0
OD1 B:ASP371 2.7 36.5 1.0
O B:HOH914 2.8 49.5 1.0
OD2 B:ASP371 3.0 33.5 1.0
CG B:ASP371 3.2 34.7 1.0
O C:HOH1000 4.1 42.2 1.0
O C:HOH1029 4.1 44.6 1.0
CB B:ASN367 4.4 26.6 1.0
O B:ASN367 4.6 29.9 1.0
NH1 B:ARG374 4.6 37.4 1.0
OD1 C:ASP371 4.7 31.8 1.0
CB B:ASP371 4.7 28.6 1.0
CG B:ASN367 4.8 34.4 1.0
O B:HOH1132 4.9 48.5 1.0
OD1 B:ASN367 5.0 37.7 1.0

Reference:

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of the Rna Binding Domain of Threonyl-Trna Synthetase From Cryptosporidium Parvum Iowa II To Be Published.
Page generated: Fri Jul 19 01:27:25 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy