Atomistry » Calcium » PDB 7m43-7mg7 » 7mg4
Atomistry »
  Calcium »
    PDB 7m43-7mg7 »
      7mg4 »

Calcium in PDB 7mg4: Concanavalin A Crystallized in the Presence of Gal-Atat

Protein crystallography data

The structure of Concanavalin A Crystallized in the Presence of Gal-Atat, PDB code: 7mg4 was solved by B.E.Partridge, P.H.Winegar, C.A.Mirkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.93 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.63, 86.03, 89.23, 90, 90, 90
R / Rfree (%) 17.9 / 23.7

Other elements in 7mg4:

The structure of Concanavalin A Crystallized in the Presence of Gal-Atat also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Concanavalin A Crystallized in the Presence of Gal-Atat (pdb code 7mg4). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Concanavalin A Crystallized in the Presence of Gal-Atat, PDB code: 7mg4:

Calcium binding site 1 out of 1 in 7mg4

Go back to Calcium Binding Sites List in 7mg4
Calcium binding site 1 out of 1 in the Concanavalin A Crystallized in the Presence of Gal-Atat


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Concanavalin A Crystallized in the Presence of Gal-Atat within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:13.8
occ:1.00
OD1 A:ASP10 2.4 12.0 1.0
OD2 A:ASP19 2.4 17.3 1.0
O A:HOH521 2.4 14.6 1.0
OD1 A:ASN14 2.4 17.9 1.0
O A:HOH470 2.4 13.4 1.0
O A:TYR12 2.4 13.4 1.0
OD2 A:ASP10 2.4 11.9 1.0
CG A:ASP10 2.7 12.3 1.0
CG A:ASP19 3.4 16.5 1.0
CG A:ASN14 3.5 19.2 1.0
C A:TYR12 3.6 14.6 1.0
OD1 A:ASP19 3.9 16.6 1.0
N A:ASN14 3.9 18.4 1.0
MN A:MN301 4.1 16.2 1.0
CB A:ASN14 4.2 18.7 1.0
CB A:ASP10 4.2 12.7 1.0
CA A:TYR12 4.5 14.2 1.0
N A:TYR12 4.5 13.6 1.0
O A:HOH438 4.5 14.7 1.0
N A:PRO13 4.6 17.0 1.0
CA A:PRO13 4.6 18.9 1.0
ND2 A:ASN14 4.6 19.5 1.0
CE1 A:HIS24 4.6 15.1 1.0
C A:PRO13 4.6 18.8 1.0
CB A:TYR12 4.7 15.2 1.0
O A:ASP208 4.7 14.2 1.0
CB A:ASP19 4.7 16.2 1.0
CA A:ASN14 4.7 18.2 1.0
OD1 A:ASP208 4.8 20.7 1.0
CB A:ARG228 4.8 18.4 1.0
CA A:ARG228 4.9 16.3 1.0
O A:ARG228 4.9 16.8 1.0
NE2 A:HIS24 5.0 13.9 1.0

Reference:

B.E.Partridge, P.H.Winegar, Z.Han, C.A.Mirkin. Redefining Protein Interfaces Within Protein Single Crystals with Dna J.Am.Chem.Soc. 2021.
ISSN: ESSN 1520-5126
DOI: 10.1021/JACS.1C04191
Page generated: Fri Jul 19 02:01:48 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy