Calcium in PDB 7n0b: Cryo-Em Structure of Sars-Cov-2 NSP10-NSP14 (Wt)-Rna Complex

The structure of Cryo-Em Structure of Sars-Cov-2 NSP10-NSP14 (Wt)-Rna Complex also contains other interesting chemical elements:

Zinc

(Zn)

5 atoms

The binding sites of Calcium atom in the Cryo-Em Structure of Sars-Cov-2 NSP10-NSP14 (Wt)-Rna Complex (pdb code 7n0b). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of Sars-Cov-2 NSP10-NSP14 (Wt)-Rna Complex, PDB code: 7n0b:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of Sars-Cov-2 NSP10-NSP14 (Wt)-Rna Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Sars-Cov-2 NSP10-NSP14 (Wt)-Rna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca601 b:28.4 occ:1.00 O D:HOH101 1.9 28.1 1.0 OP1 D:C71 1.9 33.1 1.0 OD2 B:ASP90 2.0 19.3 1.0 OD1 B:ASP273 2.1 29.0 1.0 OP2 D:C71 2.4 33.1 1.0 P D:C71 2.5 33.1 1.0 OE2 B:GLU92 3.0 23.2 1.0 CG B:ASP273 3.1 29.0 1.0 CG B:ASP90 3.1 19.3 1.0 O5' D:C71 3.3 33.1 1.0 CB B:ASP273 3.6 29.0 1.0 OD1 B:ASP90 3.6 19.3 1.0 C5' D:C71 3.9 33.1 1.0 O3' D:C70 3.9 36.2 1.0 CD B:GLU92 4.0 23.2 1.0 CA B:CA602 4.1 19.5 1.0 OD2 B:ASP273 4.1 29.0 1.0 OE1 B:GLU92 4.3 23.2 1.0 ND1 B:HIS268 4.4 43.2 1.0 CB B:ASP90 4.4 19.3 1.0 CE1 B:HIS268 4.7 43.2 1.0

Calcium binding site 2 out of 2 in the Cryo-Em Structure of Sars-Cov-2 NSP10-NSP14 (Wt)-Rna Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Sars-Cov-2 NSP10-NSP14 (Wt)-Rna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca602 b:19.5 occ:1.00 OD1 B:ASP90 2.2 19.3 1.0 OE2 B:GLU191 2.6 15.0 1.0 OP1 D:C71 2.7 33.1 1.0 O3' D:C70 2.8 36.2 1.0 CG B:ASP90 3.2 19.3 1.0 OE1 B:GLU191 3.2 15.0 1.0 P D:C71 3.3 33.1 1.0 CB B:ALA187 3.3 26.8 1.0 CD B:GLU191 3.3 15.0 1.0 OD2 B:ASP90 3.6 19.3 1.0 OP2 D:C71 4.0 33.1 1.0 C3' D:C70 4.0 36.2 1.0 N B:ALA187 4.0 26.8 1.0 CA B:CA601 4.1 28.4 1.0 C4' D:C70 4.2 36.2 1.0 CA B:ALA187 4.2 26.8 1.0 C5' D:C70 4.5 36.2 1.0 O2' D:C70 4.5 36.2 1.0 CB B:ASP90 4.5 19.3 1.0 O5' D:C71 4.6 33.1 1.0 CG B:GLU191 4.7 15.0 1.0 CA B:ASP90 4.8 19.3 1.0 N B:VAL91 4.8 16.8 1.0 O B:VAL91 4.9 16.8 1.0 C2' D:C70 4.9 36.2 1.0 CD1 B:TRP186 4.9 29.2 1.0

C.Liu, W.Shi, S.T.Becker, D.G.Schatz, B.Liu, Y.Yang. Structural Basis of Mismatch Recognition By A Sars-Cov-2 Proofreading Enzyme Science 2021.
ISSN: ESSN 1095-9203