Calcium in PDB 7n86: Crystal Structure of Human Protocadherin-24 EC1-2 Form II
Protein crystallography data
The structure of Crystal Structure of Human Protocadherin-24 EC1-2 Form II, PDB code: 7n86
was solved by
D.Modak,
M.E.Gray,
M.Sotomayor,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.15 /
3.18
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
63.899,
86.641,
104.892,
90,
103.46,
90
|
R / Rfree (%)
|
21.4 /
29
|
Other elements in 7n86:
The structure of Crystal Structure of Human Protocadherin-24 EC1-2 Form II also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Human Protocadherin-24 EC1-2 Form II
(pdb code 7n86). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the
Crystal Structure of Human Protocadherin-24 EC1-2 Form II, PDB code: 7n86:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 14 in 7n86
Go back to
Calcium Binding Sites List in 7n86
Calcium binding site 1 out
of 14 in the Crystal Structure of Human Protocadherin-24 EC1-2 Form II
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Human Protocadherin-24 EC1-2 Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca302
b:36.2
occ:1.00
|
OD2
|
A:ASP36
|
1.8
|
64.3
|
1.0
|
OD1
|
A:ASN1
|
2.0
|
85.6
|
1.0
|
OD2
|
A:ASP32
|
2.1
|
72.9
|
1.0
|
O
|
A:VAL2
|
2.6
|
31.3
|
1.0
|
OD2
|
A:ASP81
|
2.6
|
33.2
|
1.0
|
CG
|
A:ASP32
|
2.8
|
71.0
|
1.0
|
OD1
|
A:ASP32
|
3.0
|
112.5
|
1.0
|
CG
|
A:ASP36
|
3.0
|
62.3
|
1.0
|
CG
|
A:ASN1
|
3.2
|
76.7
|
1.0
|
CB
|
A:ASP34
|
3.5
|
58.5
|
1.0
|
CG
|
A:ASP81
|
3.6
|
29.1
|
1.0
|
C
|
A:VAL2
|
3.7
|
35.6
|
1.0
|
OD2
|
A:ASP34
|
3.8
|
75.5
|
1.0
|
CB
|
A:ASP36
|
3.8
|
50.2
|
1.0
|
ND2
|
A:ASN1
|
3.8
|
69.5
|
1.0
|
OD1
|
A:ASP36
|
4.0
|
89.2
|
1.0
|
CG
|
A:ASP34
|
4.0
|
77.1
|
1.0
|
CB
|
A:ASP81
|
4.1
|
24.4
|
1.0
|
N
|
A:VAL2
|
4.1
|
49.4
|
1.0
|
CB
|
A:ASP32
|
4.2
|
55.8
|
1.0
|
CB
|
A:ASN1
|
4.3
|
72.1
|
1.0
|
CA
|
A:VAL2
|
4.5
|
46.5
|
1.0
|
CA
|
A:ASP34
|
4.6
|
56.4
|
1.0
|
C
|
A:ASN1
|
4.6
|
69.7
|
1.0
|
OD1
|
A:ASP81
|
4.7
|
35.3
|
1.0
|
N
|
A:ASP34
|
4.7
|
63.5
|
1.0
|
N
|
A:ALA3
|
4.7
|
32.4
|
1.0
|
CA
|
A:ASN1
|
4.7
|
70.2
|
1.0
|
N
|
A:ASP36
|
4.8
|
67.7
|
1.0
|
CA
|
A:ASP36
|
4.9
|
52.8
|
1.0
|
CA
|
A:ALA3
|
5.0
|
27.4
|
1.0
|
CD
|
A:PRO4
|
5.0
|
24.6
|
1.0
|
|
Calcium binding site 2 out
of 14 in 7n86
Go back to
Calcium Binding Sites List in 7n86
Calcium binding site 2 out
of 14 in the Crystal Structure of Human Protocadherin-24 EC1-2 Form II
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Human Protocadherin-24 EC1-2 Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca303
b:33.7
occ:1.00
|
OD1
|
A:ASP96
|
1.9
|
54.3
|
1.0
|
OD1
|
A:ASP132
|
2.0
|
47.3
|
1.0
|
OD1
|
A:ASP99
|
2.4
|
38.8
|
1.0
|
OE1
|
A:GLU17
|
2.4
|
30.1
|
1.0
|
OE2
|
A:GLU68
|
2.5
|
33.3
|
1.0
|
O
|
A:ARG97
|
2.6
|
26.4
|
1.0
|
CG
|
A:ASP96
|
3.0
|
43.2
|
1.0
|
CG
|
A:ASP132
|
3.1
|
38.2
|
1.0
|
CD
|
A:GLU68
|
3.3
|
35.1
|
1.0
|
OE1
|
A:GLU68
|
3.3
|
30.8
|
1.0
|
CD
|
A:GLU17
|
3.4
|
29.3
|
1.0
|
OD2
|
A:ASP96
|
3.5
|
43.1
|
1.0
|
CG
|
A:ASP99
|
3.5
|
35.0
|
1.0
|
NA
|
A:NA306
|
3.6
|
20.0
|
1.0
|
OD2
|
A:ASP132
|
3.6
|
44.8
|
1.0
|
OE2
|
A:GLU17
|
3.7
|
36.1
|
1.0
|
C
|
A:ARG97
|
3.8
|
24.2
|
1.0
|
N
|
A:ARG97
|
3.9
|
24.4
|
1.0
|
OD2
|
A:ASP99
|
4.1
|
41.4
|
1.0
|
ND2
|
A:ASN100
|
4.2
|
34.7
|
1.0
|
CB
|
A:ASP96
|
4.3
|
34.5
|
1.0
|
N
|
A:ASP99
|
4.3
|
24.6
|
1.0
|
CB
|
A:ASP132
|
4.3
|
35.2
|
1.0
|
CA
|
A:ASP96
|
4.5
|
29.6
|
1.0
|
CA
|
A:ARG97
|
4.5
|
26.4
|
1.0
|
CA
|
A:ASP132
|
4.5
|
34.2
|
1.0
|
C
|
A:ASP96
|
4.6
|
24.2
|
1.0
|
CB
|
A:ASP99
|
4.6
|
31.5
|
1.0
|
CG
|
A:GLU68
|
4.7
|
39.5
|
1.0
|
CG
|
A:GLU17
|
4.7
|
29.0
|
1.0
|
CB
|
A:TYR67
|
4.7
|
38.2
|
1.0
|
N
|
A:ASN98
|
4.9
|
21.7
|
1.0
|
CA
|
A:ASP99
|
5.0
|
27.0
|
1.0
|
|
Calcium binding site 3 out
of 14 in 7n86
Go back to
Calcium Binding Sites List in 7n86
Calcium binding site 3 out
of 14 in the Crystal Structure of Human Protocadherin-24 EC1-2 Form II
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Human Protocadherin-24 EC1-2 Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca304
b:24.3
occ:1.00
|
OD1
|
A:ASN98
|
2.0
|
25.4
|
1.0
|
OD2
|
A:ASP130
|
2.1
|
32.2
|
1.0
|
OD2
|
A:ASP188
|
2.2
|
38.4
|
1.0
|
O
|
A:ALA136
|
2.4
|
30.4
|
1.0
|
O
|
A:ASN100
|
2.4
|
24.5
|
1.0
|
CG
|
A:ASP130
|
2.9
|
33.5
|
1.0
|
OD1
|
A:ASP130
|
3.1
|
51.4
|
1.0
|
OD2
|
A:ASP132
|
3.1
|
44.8
|
1.0
|
CG
|
A:ASN98
|
3.1
|
24.0
|
1.0
|
CG
|
A:ASP188
|
3.3
|
37.7
|
1.0
|
C
|
A:ASN100
|
3.5
|
25.7
|
1.0
|
CB
|
A:ASP132
|
3.5
|
35.2
|
1.0
|
C
|
A:ALA136
|
3.5
|
32.3
|
1.0
|
ND2
|
A:ASN98
|
3.6
|
25.8
|
1.0
|
CB
|
A:ASP188
|
3.8
|
34.8
|
1.0
|
CG
|
A:ASP132
|
3.8
|
38.2
|
1.0
|
CA
|
A:ALA136
|
4.2
|
34.1
|
1.0
|
CB
|
A:ALA136
|
4.2
|
35.9
|
1.0
|
CB
|
A:ASP130
|
4.3
|
29.4
|
1.0
|
N
|
A:ASN100
|
4.4
|
24.9
|
1.0
|
OD1
|
A:ASP188
|
4.4
|
45.0
|
1.0
|
CA
|
A:ASN100
|
4.4
|
25.9
|
1.0
|
N
|
A:ALA101
|
4.4
|
25.3
|
1.0
|
CB
|
A:ASN98
|
4.4
|
20.6
|
1.0
|
CA
|
A:ALA101
|
4.5
|
27.2
|
1.0
|
N
|
A:GLY137
|
4.6
|
31.3
|
1.0
|
CA
|
A:ASN98
|
4.6
|
21.9
|
1.0
|
CB
|
A:GLN200
|
4.6
|
35.5
|
1.0
|
CB
|
A:ASN100
|
4.7
|
25.8
|
1.0
|
C
|
A:ASN98
|
4.9
|
24.1
|
1.0
|
CA
|
A:ASP132
|
4.9
|
34.2
|
1.0
|
CA
|
A:GLY137
|
5.0
|
34.6
|
1.0
|
OD1
|
A:ASP132
|
5.0
|
47.3
|
1.0
|
CG
|
A:GLN200
|
5.0
|
36.9
|
1.0
|
|
Calcium binding site 4 out
of 14 in 7n86
Go back to
Calcium Binding Sites List in 7n86
Calcium binding site 4 out
of 14 in the Crystal Structure of Human Protocadherin-24 EC1-2 Form II
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Human Protocadherin-24 EC1-2 Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca301
b:63.4
occ:1.00
|
O
|
B:VAL2
|
2.1
|
57.9
|
1.0
|
OD1
|
B:ASP32
|
2.2
|
66.1
|
1.0
|
OD1
|
B:ASN1
|
2.3
|
93.0
|
1.0
|
OD2
|
B:ASP36
|
2.4
|
81.6
|
1.0
|
OD2
|
B:ASP32
|
2.8
|
94.7
|
1.0
|
CG
|
B:ASP32
|
2.8
|
71.4
|
1.0
|
N
|
B:VAL2
|
3.1
|
79.1
|
1.0
|
OD2
|
B:ASP81
|
3.2
|
42.5
|
1.0
|
C
|
B:VAL2
|
3.2
|
64.3
|
1.0
|
CG
|
B:ASN1
|
3.3
|
85.5
|
1.0
|
OD2
|
B:ASP34
|
3.4
|
119.3
|
1.0
|
CG
|
B:ASP34
|
3.5
|
126.4
|
1.0
|
CB
|
B:ASP34
|
3.6
|
119.3
|
1.0
|
CG
|
B:ASP36
|
3.6
|
87.7
|
1.0
|
CA
|
B:VAL2
|
3.7
|
74.5
|
1.0
|
ND2
|
B:ASN1
|
4.0
|
82.0
|
1.0
|
C
|
B:ASN1
|
4.1
|
67.9
|
1.0
|
OD1
|
B:ASP34
|
4.1
|
114.2
|
1.0
|
CG
|
B:ASP81
|
4.1
|
44.8
|
1.0
|
CB
|
B:VAL2
|
4.1
|
90.9
|
1.0
|
CA
|
B:ASN1
|
4.2
|
74.5
|
1.0
|
CB
|
B:ASN1
|
4.3
|
86.8
|
1.0
|
N
|
B:ASP34
|
4.3
|
95.8
|
1.0
|
CB
|
B:ASP32
|
4.3
|
69.8
|
1.0
|
OD1
|
B:ASP36
|
4.4
|
101.7
|
1.0
|
N
|
B:ALA3
|
4.4
|
51.0
|
1.0
|
CA
|
B:ASP34
|
4.5
|
97.6
|
1.0
|
CB
|
B:ASP81
|
4.6
|
43.3
|
1.0
|
CB
|
B:ASP36
|
4.6
|
89.0
|
1.0
|
CG1
|
B:VAL2
|
4.8
|
85.5
|
1.0
|
C
|
B:ALA3
|
4.9
|
56.9
|
1.0
|
CA
|
B:ALA3
|
4.9
|
53.7
|
1.0
|
|
Calcium binding site 5 out
of 14 in 7n86
Go back to
Calcium Binding Sites List in 7n86
Calcium binding site 5 out
of 14 in the Crystal Structure of Human Protocadherin-24 EC1-2 Form II
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Human Protocadherin-24 EC1-2 Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca302
b:27.6
occ:1.00
|
OE2
|
B:GLU68
|
1.8
|
45.7
|
1.0
|
OD1
|
B:ASP99
|
1.9
|
38.0
|
1.0
|
OD1
|
B:ASP96
|
2.1
|
28.5
|
1.0
|
OD1
|
B:ASP132
|
2.4
|
29.9
|
1.0
|
OE1
|
B:GLU17
|
2.4
|
38.5
|
1.0
|
O
|
B:ARG97
|
2.7
|
20.9
|
1.0
|
CD
|
B:GLU68
|
2.8
|
40.2
|
1.0
|
OE1
|
B:GLU68
|
3.1
|
32.3
|
1.0
|
CG
|
B:ASP99
|
3.1
|
35.2
|
1.0
|
CG
|
B:ASP96
|
3.2
|
31.8
|
1.0
|
CD
|
B:GLU17
|
3.3
|
34.5
|
1.0
|
CG
|
B:ASP132
|
3.6
|
26.4
|
1.0
|
OE2
|
B:GLU17
|
3.6
|
31.0
|
1.0
|
OD2
|
B:ASP99
|
3.8
|
41.5
|
1.0
|
C
|
B:ARG97
|
3.9
|
23.6
|
1.0
|
OD2
|
B:ASP96
|
3.9
|
30.7
|
1.0
|
N
|
B:ARG97
|
3.9
|
28.8
|
1.0
|
ND2
|
B:ASN100
|
3.9
|
34.5
|
1.0
|
CG
|
B:GLU68
|
4.2
|
40.1
|
1.0
|
N
|
B:ASP99
|
4.2
|
31.9
|
1.0
|
CB
|
B:ASP99
|
4.3
|
32.0
|
1.0
|
OD2
|
B:ASP132
|
4.4
|
18.8
|
1.0
|
CB
|
B:ASP96
|
4.4
|
30.2
|
1.0
|
CA
|
B:ASP96
|
4.4
|
27.1
|
1.0
|
CA
|
B:ARG97
|
4.5
|
30.0
|
1.0
|
C
|
B:ASP96
|
4.6
|
27.7
|
1.0
|
CB
|
B:ASP132
|
4.6
|
30.4
|
1.0
|
NA
|
B:NA306
|
4.6
|
37.2
|
1.0
|
CG
|
B:GLU17
|
4.7
|
33.8
|
1.0
|
CB
|
B:TYR67
|
4.7
|
32.6
|
1.0
|
CA
|
B:ASP99
|
4.8
|
32.0
|
1.0
|
N
|
B:ASN98
|
4.8
|
22.0
|
1.0
|
CA
|
B:ASP132
|
4.9
|
33.8
|
1.0
|
OD1
|
B:ASP66
|
4.9
|
70.2
|
1.0
|
CA
|
B:ASN98
|
5.0
|
23.9
|
1.0
|
|
Calcium binding site 6 out
of 14 in 7n86
Go back to
Calcium Binding Sites List in 7n86
Calcium binding site 6 out
of 14 in the Crystal Structure of Human Protocadherin-24 EC1-2 Form II
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Human Protocadherin-24 EC1-2 Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca303
b:25.7
occ:1.00
|
OD1
|
B:ASN98
|
1.9
|
22.4
|
1.0
|
OD2
|
B:ASP188
|
2.1
|
28.8
|
1.0
|
O
|
B:ASN100
|
2.2
|
24.1
|
1.0
|
OD2
|
B:ASP130
|
2.4
|
16.7
|
1.0
|
O
|
B:ALA136
|
2.5
|
35.3
|
1.0
|
OD2
|
B:ASP132
|
2.7
|
18.8
|
1.0
|
CG
|
B:ASN98
|
2.9
|
22.3
|
1.0
|
OD1
|
B:ASP130
|
2.9
|
20.5
|
1.0
|
CG
|
B:ASP130
|
2.9
|
17.7
|
1.0
|
CG
|
B:ASP188
|
3.2
|
35.2
|
1.0
|
ND2
|
B:ASN98
|
3.4
|
22.0
|
1.0
|
C
|
B:ASN100
|
3.4
|
23.5
|
1.0
|
CG
|
B:ASP132
|
3.6
|
26.4
|
1.0
|
C
|
B:ALA136
|
3.7
|
35.2
|
1.0
|
OE1
|
B:GLN200
|
3.8
|
111.3
|
1.0
|
CB
|
B:ASP188
|
3.8
|
36.6
|
1.0
|
CB
|
B:ASP132
|
3.9
|
30.4
|
1.0
|
CB
|
B:ASN98
|
4.2
|
22.9
|
1.0
|
N
|
B:ASN100
|
4.2
|
27.9
|
1.0
|
CB
|
B:ALA136
|
4.2
|
40.3
|
1.0
|
OD1
|
B:ASP188
|
4.3
|
43.2
|
1.0
|
N
|
B:ALA101
|
4.3
|
22.6
|
1.0
|
CA
|
B:ASN100
|
4.3
|
25.8
|
1.0
|
CB
|
B:ASP130
|
4.4
|
16.1
|
1.0
|
CA
|
B:ALA136
|
4.4
|
36.5
|
1.0
|
CA
|
B:ALA101
|
4.4
|
23.5
|
1.0
|
CA
|
B:ASN98
|
4.5
|
23.9
|
1.0
|
CB
|
B:GLN200
|
4.6
|
35.2
|
1.0
|
C
|
B:ASN98
|
4.7
|
27.0
|
1.0
|
CB
|
B:ASN100
|
4.7
|
30.5
|
1.0
|
OD1
|
B:ASP132
|
4.7
|
29.9
|
1.0
|
N
|
B:GLY137
|
4.8
|
36.8
|
1.0
|
CD
|
B:GLN200
|
4.8
|
67.5
|
1.0
|
N
|
B:ASP99
|
4.9
|
31.9
|
1.0
|
|
Calcium binding site 7 out
of 14 in 7n86
Go back to
Calcium Binding Sites List in 7n86
Calcium binding site 7 out
of 14 in the Crystal Structure of Human Protocadherin-24 EC1-2 Form II
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Human Protocadherin-24 EC1-2 Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca301
b:56.2
occ:1.00
|
O
|
C:VAL2
|
2.0
|
65.9
|
1.0
|
OD1
|
C:ASN1
|
2.1
|
125.0
|
1.0
|
OD2
|
C:ASP32
|
2.5
|
66.9
|
1.0
|
OD1
|
C:ASP32
|
2.6
|
56.6
|
1.0
|
OD2
|
C:ASP36
|
2.6
|
62.1
|
1.0
|
OD2
|
C:ASP81
|
2.9
|
46.6
|
1.0
|
CG
|
C:ASP32
|
2.9
|
61.2
|
1.0
|
CG
|
C:ASN1
|
3.0
|
116.9
|
1.0
|
OD2
|
C:ASP34
|
3.1
|
111.3
|
1.0
|
C
|
C:VAL2
|
3.1
|
63.5
|
1.0
|
N
|
C:VAL2
|
3.2
|
76.5
|
1.0
|
CB
|
C:ASP34
|
3.4
|
86.6
|
1.0
|
CG
|
C:ASP34
|
3.5
|
90.0
|
1.0
|
ND2
|
C:ASN1
|
3.5
|
124.4
|
1.0
|
CG
|
C:ASP36
|
3.6
|
71.9
|
1.0
|
CA
|
C:VAL2
|
3.7
|
65.7
|
1.0
|
CG
|
C:ASP81
|
3.7
|
46.6
|
1.0
|
C
|
C:ASN1
|
4.0
|
84.6
|
1.0
|
CB
|
C:ASN1
|
4.2
|
109.3
|
1.0
|
CA
|
C:ASN1
|
4.2
|
97.9
|
1.0
|
N
|
C:ALA3
|
4.2
|
51.6
|
1.0
|
CB
|
C:ASP36
|
4.3
|
66.8
|
1.0
|
CB
|
C:VAL2
|
4.3
|
61.2
|
1.0
|
CB
|
C:ASP81
|
4.4
|
40.8
|
1.0
|
CB
|
C:ASP32
|
4.4
|
63.0
|
1.0
|
OD1
|
C:ASP34
|
4.5
|
86.3
|
1.0
|
N
|
C:ASP34
|
4.5
|
75.4
|
1.0
|
OD1
|
C:ASP36
|
4.5
|
88.6
|
1.0
|
OD1
|
C:ASP81
|
4.5
|
57.3
|
1.0
|
CA
|
C:ASP34
|
4.5
|
71.5
|
1.0
|
CA
|
C:ALA3
|
4.6
|
47.9
|
1.0
|
C
|
C:ALA3
|
4.7
|
42.3
|
1.0
|
O
|
C:ASN1
|
5.0
|
92.3
|
1.0
|
N
|
C:PRO4
|
5.0
|
43.4
|
1.0
|
|
Calcium binding site 8 out
of 14 in 7n86
Go back to
Calcium Binding Sites List in 7n86
Calcium binding site 8 out
of 14 in the Crystal Structure of Human Protocadherin-24 EC1-2 Form II
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Human Protocadherin-24 EC1-2 Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca302
b:56.0
occ:1.00
|
OD1
|
C:ASP66
|
2.0
|
74.7
|
1.0
|
OD2
|
C:ASP99
|
2.1
|
46.6
|
1.0
|
OE2
|
C:GLU17
|
2.9
|
25.0
|
1.0
|
CG
|
C:ASP99
|
3.1
|
34.6
|
1.0
|
CG
|
C:ASP66
|
3.2
|
59.4
|
1.0
|
OE1
|
C:GLU68
|
3.2
|
30.4
|
1.0
|
OD1
|
C:ASP99
|
3.8
|
36.1
|
1.0
|
CD
|
C:GLU17
|
3.8
|
31.4
|
1.0
|
CB
|
C:ASP66
|
4.0
|
41.4
|
1.0
|
CB
|
C:ASP99
|
4.0
|
30.3
|
1.0
|
OD2
|
C:ASP66
|
4.1
|
85.4
|
1.0
|
OD1
|
C:ASN100
|
4.2
|
20.9
|
1.0
|
CD
|
C:GLU68
|
4.2
|
34.9
|
1.0
|
CA
|
C:ASP66
|
4.4
|
38.4
|
1.0
|
CG
|
C:GLU17
|
4.4
|
33.2
|
1.0
|
ND2
|
C:ASN100
|
4.5
|
28.3
|
1.0
|
OE2
|
C:GLU68
|
4.6
|
34.3
|
1.0
|
OE1
|
C:GLU17
|
4.6
|
37.7
|
1.0
|
CG
|
C:ASN100
|
4.7
|
23.1
|
1.0
|
CA
|
C:CA303
|
4.8
|
35.4
|
1.0
|
O
|
C:LEU65
|
4.9
|
40.2
|
1.0
|
|
Calcium binding site 9 out
of 14 in 7n86
Go back to
Calcium Binding Sites List in 7n86
Calcium binding site 9 out
of 14 in the Crystal Structure of Human Protocadherin-24 EC1-2 Form II
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Human Protocadherin-24 EC1-2 Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca303
b:35.4
occ:1.00
|
OD1
|
C:ASP132
|
2.1
|
48.7
|
1.0
|
OD1
|
C:ASP96
|
2.2
|
36.9
|
1.0
|
OE2
|
C:GLU68
|
2.2
|
34.3
|
1.0
|
O
|
C:ARG97
|
2.2
|
21.4
|
1.0
|
OD1
|
C:ASP99
|
2.5
|
36.1
|
1.0
|
OE1
|
C:GLU17
|
2.6
|
37.7
|
1.0
|
CG
|
C:ASP99
|
3.0
|
34.6
|
1.0
|
OD2
|
C:ASP99
|
3.2
|
46.6
|
1.0
|
CG
|
C:ASP132
|
3.2
|
34.0
|
1.0
|
CD
|
C:GLU17
|
3.2
|
31.4
|
1.0
|
OE2
|
C:GLU17
|
3.3
|
25.0
|
1.0
|
CD
|
C:GLU68
|
3.3
|
34.9
|
1.0
|
CG
|
C:ASP96
|
3.4
|
41.1
|
1.0
|
C
|
C:ARG97
|
3.4
|
26.3
|
1.0
|
N
|
C:ARG97
|
3.5
|
29.2
|
1.0
|
OE1
|
C:GLU68
|
3.6
|
30.4
|
1.0
|
OD2
|
C:ASP132
|
3.7
|
29.5
|
1.0
|
N
|
C:ASP99
|
3.9
|
27.5
|
1.0
|
ND2
|
C:ASN100
|
4.0
|
28.3
|
1.0
|
OD2
|
C:ASP96
|
4.0
|
31.5
|
1.0
|
CA
|
C:ARG97
|
4.1
|
26.3
|
1.0
|
CB
|
C:ASP99
|
4.2
|
30.3
|
1.0
|
C
|
C:ASP96
|
4.4
|
32.4
|
1.0
|
CA
|
C:ASP96
|
4.5
|
35.8
|
1.0
|
CB
|
C:ASP132
|
4.5
|
31.5
|
1.0
|
N
|
C:ASN98
|
4.5
|
29.9
|
1.0
|
CB
|
C:ASP96
|
4.5
|
41.6
|
1.0
|
CG
|
C:GLU68
|
4.6
|
39.4
|
1.0
|
CA
|
C:ASP99
|
4.6
|
29.2
|
1.0
|
CG
|
C:GLU17
|
4.7
|
33.2
|
1.0
|
CA
|
C:ASN98
|
4.7
|
30.8
|
1.0
|
CB
|
C:ARG97
|
4.8
|
25.7
|
1.0
|
CA
|
C:ASP132
|
4.8
|
33.3
|
1.0
|
CA
|
C:CA302
|
4.8
|
56.0
|
1.0
|
C
|
C:ASN98
|
4.9
|
27.8
|
1.0
|
|
Calcium binding site 10 out
of 14 in 7n86
Go back to
Calcium Binding Sites List in 7n86
Calcium binding site 10 out
of 14 in the Crystal Structure of Human Protocadherin-24 EC1-2 Form II
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Human Protocadherin-24 EC1-2 Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca304
b:25.7
occ:1.00
|
OD1
|
C:ASN98
|
2.1
|
37.5
|
1.0
|
O
|
C:ASN100
|
2.2
|
29.5
|
1.0
|
OD2
|
C:ASP130
|
2.2
|
25.7
|
1.0
|
O
|
C:ALA136
|
2.6
|
26.2
|
1.0
|
OD2
|
C:ASP132
|
2.8
|
29.5
|
1.0
|
CG
|
C:ASP130
|
2.8
|
25.5
|
1.0
|
OD1
|
C:ASP130
|
2.9
|
29.0
|
1.0
|
OD2
|
C:ASP188
|
3.1
|
36.3
|
1.0
|
CG
|
C:ASN98
|
3.2
|
37.6
|
1.0
|
C
|
C:ASN100
|
3.3
|
22.0
|
1.0
|
CB
|
C:ASP132
|
3.4
|
31.5
|
1.0
|
CG
|
C:ASP132
|
3.5
|
34.0
|
1.0
|
C
|
C:ALA136
|
3.8
|
25.0
|
1.0
|
ND2
|
C:ASN98
|
3.9
|
40.1
|
1.0
|
N
|
C:ASN100
|
4.0
|
21.6
|
1.0
|
CG
|
C:ASP188
|
4.0
|
47.8
|
1.0
|
CA
|
C:ASN100
|
4.1
|
20.8
|
1.0
|
CB
|
C:ASP130
|
4.2
|
26.0
|
1.0
|
CB
|
C:ASP188
|
4.3
|
47.2
|
1.0
|
N
|
C:ALA101
|
4.3
|
23.3
|
1.0
|
CB
|
C:ALA136
|
4.3
|
20.6
|
1.0
|
CB
|
C:ASN98
|
4.4
|
35.7
|
1.0
|
CB
|
C:ASN100
|
4.4
|
21.4
|
1.0
|
CA
|
C:ALA136
|
4.5
|
23.9
|
1.0
|
CA
|
C:ASN98
|
4.5
|
30.8
|
1.0
|
CA
|
C:ALA101
|
4.6
|
26.0
|
1.0
|
C
|
C:ASN98
|
4.6
|
27.8
|
1.0
|
N
|
C:ASP99
|
4.7
|
27.5
|
1.0
|
OD1
|
C:ASP132
|
4.8
|
48.7
|
1.0
|
N
|
C:GLY137
|
4.8
|
26.0
|
1.0
|
CA
|
C:ASP132
|
4.8
|
33.3
|
1.0
|
CG
|
C:GLN200
|
4.8
|
30.7
|
1.0
|
CB
|
C:GLN200
|
4.9
|
25.7
|
1.0
|
N
|
C:ASP132
|
4.9
|
35.6
|
1.0
|
CA
|
C:GLY137
|
5.0
|
26.6
|
1.0
|
|
Reference:
M.E.Gray,
Z.R.Johnson,
D.Modak,
T.J.Tyska,
M.Sotomayor.
Species-Dependent Heterophilic and Homophilic Cadherin Interactions in Intestinal Intermicrovillar Links To Be Published.
Page generated: Fri Jul 19 02:10:08 2024
|