Atomistry » Calcium » PDB 7mg8-7ni3 » 7n8o
Atomistry »
  Calcium »
    PDB 7mg8-7ni3 »
      7n8o »

Calcium in PDB 7n8o: High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

Enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

All present enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803:
1.10.3.9;

Other elements in 7n8o:

The structure of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 also contains other interesting chemical elements:

Manganese (Mn) 8 atoms
Iron (Fe) 6 atoms
Magnesium (Mg) 70 atoms
Chlorine (Cl) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 (pdb code 7n8o). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803, PDB code: 7n8o:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 7n8o

Go back to Calcium Binding Sites List in 7n8o
Calcium binding site 1 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:5.5
occ:1.00
CA1 A:OEX401 0.0 5.5 1.0
O5 A:OEX401 2.1 5.5 1.0
O A:HOH515 2.2 4.9 1.0
OD2 A:ASP170 2.3 0.4 1.0
O A:HOH546 2.4 5.4 1.0
O2 A:OEX401 2.4 5.5 1.0
O1 A:OEX401 2.5 5.5 1.0
CG A:ASP170 3.1 0.4 1.0
OD1 A:ASP170 3.4 0.4 1.0
OE1 A:GLU189 3.4 1.9 1.0
MN3 A:OEX401 3.4 5.5 1.0
MN2 A:OEX401 3.6 5.5 1.0
MN1 A:OEX401 3.8 5.5 1.0
O A:ALA344 3.8 4.4 1.0
OE1 A:GLN165 3.8 1.1 1.0
MN4 A:OEX401 3.9 5.5 1.0
O4 A:OEX401 3.9 5.5 1.0
NH1 C:ARG344 4.2 2.7 1.0
C A:ALA344 4.2 4.4 1.0
NH2 C:ARG344 4.3 2.7 1.0
CB A:ASP170 4.3 0.4 1.0
O3 A:OEX401 4.4 5.5 1.0
CD A:GLU189 4.4 1.9 1.0
O A:HOH533 4.6 4.0 1.0
OE2 A:GLU189 4.7 1.9 1.0
CZ C:ARG344 4.7 2.7 1.0
OH A:TYR161 4.7 5.5 1.0
O A:HOH556 4.8 5.2 1.0
CD A:GLN165 4.8 1.1 1.0
O A:HOH562 4.8 5.4 1.0
CB A:GLN165 5.0 1.1 1.0

Calcium binding site 2 out of 8 in 7n8o

Go back to Calcium Binding Sites List in 7n8o
Calcium binding site 2 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Ca104

b:17.6
occ:1.00
OD1 K:ASP22 2.2 11.2 1.0
OD2 K:ASP18 2.3 12.5 1.0
OD1 K:ASP18 2.4 12.5 1.0
OD2 K:ASP22 2.5 11.2 1.0
CG K:ASP18 2.6 12.5 1.0
OE1 Y:GLU64 2.6 14.8 1.0
CG K:ASP22 2.6 11.2 1.0
O K:ASP18 3.7 12.5 1.0
CD Y:GLU64 3.8 14.8 1.0
CB K:ASP18 4.0 12.5 1.0
C K:ASP18 4.0 12.5 1.0
CB K:ASP22 4.1 11.2 1.0
NE2 C:HIS61 4.2 7.9 1.0
OE1 Y:GLN68 4.4 13.9 1.0
OE2 Y:GLU64 4.5 14.8 1.0
CA K:ASP18 4.5 12.5 1.0
N K:PRO19 4.6 11.6 1.0
CE1 C:HIS61 4.8 7.9 1.0
CA K:PRO19 4.9 11.6 1.0
CD2 C:HIS61 4.9 7.9 1.0
CG Y:GLU64 4.9 14.8 1.0
CA K:ASP22 5.0 11.2 1.0

Calcium binding site 3 out of 8 in 7n8o

Go back to Calcium Binding Sites List in 7n8o
Calcium binding site 3 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Ca201

b:13.2
occ:1.00
OD1 U:ASP59 1.9 10.6 1.0
OD2 U:ASP59 2.2 10.6 1.0
O B:SER386 2.3 11.6 1.0
CG U:ASP59 2.3 10.6 1.0
O U:HOH301 2.3 8.0 1.0
O B:HOH736 2.4 8.3 1.0
OG B:SER386 2.5 11.6 1.0
OD1 U:ASP62 2.5 11.2 1.0
OD2 U:ASP62 2.5 11.2 1.0
CG U:ASP62 2.9 11.2 1.0
C B:SER386 3.2 11.6 1.0
CB B:SER386 3.6 11.6 1.0
CA B:SER386 3.8 11.6 1.0
CB U:ASP59 3.8 10.6 1.0
N B:GLU387 4.2 12.7 1.0
CB U:ASP62 4.4 11.2 1.0
N U:ASP59 4.4 10.6 1.0
CG B:GLU387 4.5 12.7 1.0
CA B:GLU387 4.6 12.7 1.0
CA U:ASP59 4.7 10.6 1.0
N U:ASP62 5.0 11.2 1.0

Calcium binding site 4 out of 8 in 7n8o

Go back to Calcium Binding Sites List in 7n8o
Calcium binding site 4 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Ca202

b:12.6
occ:1.00
O V:HOH302 2.3 7.3 1.0
OE2 C:GLU70 2.3 5.9 1.0
O V:HOH304 2.4 7.4 1.0
OE1 C:GLU70 2.4 5.9 1.0
OE1 V:GLU128 2.5 11.4 1.0
OE1 V:GLN64 2.6 6.6 1.0
OE2 V:GLU128 2.6 11.4 1.0
CD C:GLU70 2.7 5.9 1.0
CD V:GLU128 2.9 11.4 1.0
CD V:GLN64 3.8 6.6 1.0
O C:HOH704 3.9 30.0 1.0
NZ C:LYS66 3.9 8.8 1.0
O V:ASP60 4.1 9.6 1.0
CG C:GLU70 4.2 5.9 1.0
NE2 C:HIS385 4.3 2.8 1.0
CG V:GLU128 4.4 11.4 1.0
CE C:LYS66 4.6 8.8 1.0
CG V:GLN64 4.6 6.6 1.0
CE1 C:HIS385 4.7 2.8 1.0
NE2 V:GLN64 4.7 6.6 1.0
CA V:THR61 4.8 7.9 1.0
O V:THR61 4.8 7.9 1.0
O V:HOH319 4.8 30.0 1.0
O V:HOH307 4.9 5.6 1.0
CB V:GLN64 4.9 6.6 1.0
CB C:GLU70 5.0 5.9 1.0

Calcium binding site 5 out of 8 in 7n8o

Go back to Calcium Binding Sites List in 7n8o
Calcium binding site 5 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca401

b:5.5
occ:1.00
CA1 a:OEX401 0.0 5.5 1.0
O5 a:OEX401 2.1 5.5 1.0
O a:HOH515 2.2 4.9 1.0
OD2 a:ASP170 2.3 0.4 1.0
O a:HOH546 2.4 5.4 1.0
O2 a:OEX401 2.4 5.5 1.0
O1 a:OEX401 2.5 5.5 1.0
CG a:ASP170 3.1 0.4 1.0
OD1 a:ASP170 3.4 0.4 1.0
OE1 a:GLU189 3.4 1.9 1.0
MN3 a:OEX401 3.4 5.5 1.0
MN2 a:OEX401 3.6 5.5 1.0
MN1 a:OEX401 3.8 5.5 1.0
O a:ALA344 3.8 4.4 1.0
OE1 a:GLN165 3.8 1.1 1.0
MN4 a:OEX401 3.9 5.5 1.0
O4 a:OEX401 3.9 5.5 1.0
NH1 c:ARG344 4.2 2.7 1.0
C a:ALA344 4.2 4.4 1.0
NH2 c:ARG344 4.3 2.7 1.0
CB a:ASP170 4.3 0.4 1.0
O3 a:OEX401 4.4 5.5 1.0
CD a:GLU189 4.4 1.9 1.0
O a:HOH533 4.6 4.0 1.0
OE2 a:GLU189 4.7 1.9 1.0
CZ c:ARG344 4.7 2.7 1.0
OH a:TYR161 4.7 5.5 1.0
O a:HOH555 4.8 5.2 1.0
CD a:GLN165 4.8 1.1 1.0
O a:HOH562 4.8 5.4 1.0
CB a:GLN165 5.0 1.1 1.0

Calcium binding site 6 out of 8 in 7n8o

Go back to Calcium Binding Sites List in 7n8o
Calcium binding site 6 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Ca104

b:17.6
occ:1.00
OD1 k:ASP22 2.2 11.2 1.0
OD2 k:ASP18 2.3 12.5 1.0
OD1 k:ASP18 2.4 12.5 1.0
OD2 k:ASP22 2.5 11.2 1.0
CG k:ASP18 2.6 12.5 1.0
OE1 y:GLU64 2.6 14.8 1.0
CG k:ASP22 2.6 11.2 1.0
O k:ASP18 3.7 12.5 1.0
CD y:GLU64 3.8 14.8 1.0
CB k:ASP18 4.0 12.5 1.0
C k:ASP18 4.0 12.5 1.0
CB k:ASP22 4.1 11.2 1.0
NE2 c:HIS61 4.2 7.9 1.0
OE1 y:GLN68 4.4 13.9 1.0
OE2 y:GLU64 4.5 14.8 1.0
CA k:ASP18 4.5 12.5 1.0
N k:PRO19 4.6 11.6 1.0
CE1 c:HIS61 4.8 7.9 1.0
CA k:PRO19 4.9 11.6 1.0
CD2 c:HIS61 4.9 7.9 1.0
CG y:GLU64 4.9 14.8 1.0
CA k:ASP22 5.0 11.2 1.0

Calcium binding site 7 out of 8 in 7n8o

Go back to Calcium Binding Sites List in 7n8o
Calcium binding site 7 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
u:Ca201

b:13.2
occ:1.00
OD1 u:ASP59 1.9 10.6 1.0
OD2 u:ASP59 2.2 10.6 1.0
O b:SER386 2.3 11.6 1.0
CG u:ASP59 2.3 10.6 1.0
O u:HOH301 2.3 8.0 1.0
O b:HOH736 2.4 8.3 1.0
OG b:SER386 2.5 11.6 1.0
OD1 u:ASP62 2.5 11.2 1.0
OD2 u:ASP62 2.5 11.2 1.0
CG u:ASP62 2.9 11.2 1.0
C b:SER386 3.2 11.6 1.0
CB b:SER386 3.6 11.6 1.0
CA b:SER386 3.8 11.6 1.0
CB u:ASP59 3.8 10.6 1.0
N b:GLU387 4.2 12.7 1.0
CB u:ASP62 4.4 11.2 1.0
N u:ASP59 4.4 10.6 1.0
CG b:GLU387 4.5 12.7 1.0
CA b:GLU387 4.6 12.7 1.0
CA u:ASP59 4.7 10.6 1.0
N u:ASP62 5.0 11.2 1.0

Calcium binding site 8 out of 8 in 7n8o

Go back to Calcium Binding Sites List in 7n8o
Calcium binding site 8 out of 8 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
v:Ca202

b:12.6
occ:1.00
O v:HOH302 2.3 7.3 1.0
OE2 c:GLU70 2.3 5.9 1.0
O v:HOH304 2.4 7.4 1.0
OE1 c:GLU70 2.4 5.9 1.0
OE1 v:GLU128 2.5 11.4 1.0
OE1 v:GLN64 2.6 6.6 1.0
OE2 v:GLU128 2.6 11.4 1.0
CD c:GLU70 2.7 5.9 1.0
CD v:GLU128 2.9 11.4 1.0
CD v:GLN64 3.8 6.6 1.0
O c:HOH704 3.9 30.0 1.0
NZ c:LYS66 3.9 8.8 1.0
O v:ASP60 4.1 9.6 1.0
CG c:GLU70 4.2 5.9 1.0
NE2 c:HIS385 4.3 2.8 1.0
CG v:GLU128 4.4 11.4 1.0
CE c:LYS66 4.6 8.8 1.0
CG v:GLN64 4.6 6.6 1.0
CE1 c:HIS385 4.7 2.8 1.0
NE2 v:GLN64 4.7 6.6 1.0
CA v:THR61 4.8 7.9 1.0
O v:THR61 4.8 7.9 1.0
O v:HOH319 4.8 30.0 1.0
O v:HOH307 4.9 5.6 1.0
CB v:GLN64 4.9 6.6 1.0
CB c:GLU70 5.0 5.9 1.0

Reference:

C.J.Gisriel, J.Wang, J.Liu, D.A.Flesher, K.M.Reiss, H.Huang, K.R.Yang, W.H.Armstrong, M.R.Gunner, V.S.Batista, R.J.Debus, G.W.Brudvig. High-Resolution Cryo-Em Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 To Be Published.
Page generated: Fri Jul 19 02:10:20 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy