Calcium in PDB 7nyr: Respiratory Complex I From Escherichia Coli - Conformation 1

All present enzymatic activity of Respiratory Complex I From Escherichia Coli - Conformation 1:
1.6.5.11; 1.6.5.3; 1.6.99.5; 7.1.1.2;

The structure of Respiratory Complex I From Escherichia Coli - Conformation 1 also contains other interesting chemical elements:

Iron

(Fe)

32 atoms

The binding sites of Calcium atom in the Respiratory Complex I From Escherichia Coli - Conformation 1 (pdb code 7nyr). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Respiratory Complex I From Escherichia Coli - Conformation 1, PDB code: 7nyr:

Calcium binding site 1 out of 1 in the Respiratory Complex I From Escherichia Coli - Conformation 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Respiratory Complex I From Escherichia Coli - Conformation 1 within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca1005 b:30.2 occ:1.00 OD2 G:ASP617 2.2 13.3 1.0 OE1 G:GLN632 2.3 5.3 1.0 OD2 G:ASP731 2.3 25.2 1.0 OE2 G:GLU647 2.3 24.1 1.0 CD G:GLU647 3.2 24.1 1.0 CG G:ASP731 3.4 25.2 1.0 OE1 G:GLU647 3.4 24.1 1.0 CG G:ASP617 3.5 13.3 1.0 CD G:GLN632 3.5 5.3 1.0 CB G:ASP731 3.8 25.2 1.0 CB G:GLN632 4.1 5.3 1.0 OD1 G:ASP617 4.2 13.3 1.0 NE2 G:GLN632 4.4 5.3 1.0 CG G:GLN632 4.4 5.3 1.0 OD1 G:ASP731 4.5 25.2 1.0 CG G:GLU647 4.5 24.1 1.0 CB G:ASP617 4.5 13.3 1.0 OD1 G:ASP729 4.6 25.6 1.0 NH2 G:ARG650 4.7 17.2 1.0 N G:ASP617 4.9 13.3 1.0

P.Kolata, R.G.Efremov. Structure of Escherichia Coli Respiratory Complex I Reconstituted Into Lipid Nanodiscs Reveals An Uncoupled Conformation. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34308841
DOI: 10.7554/ELIFE.68710