Calcium in PDB 7pkh: C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Calcium atom in the C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand
(pdb code 7pkh). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 20 binding sites of Calcium where determined in the
C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand, PDB code: 7pkh:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 20 in 7pkh
Go back to
Calcium Binding Sites List in 7pkh
Calcium binding site 1 out
of 20 in the C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca301
b:52.8
occ:1.00
|
O1
|
J:PC303
|
2.2
|
50.3
|
1.0
|
OE1
|
J:GLU138
|
2.4
|
49.0
|
1.0
|
OE1
|
J:GLU147
|
2.4
|
52.3
|
1.0
|
OE1
|
J:GLN150
|
2.5
|
47.5
|
1.0
|
OD1
|
J:ASP140
|
2.5
|
54.1
|
1.0
|
OD2
|
J:ASP140
|
2.7
|
54.1
|
1.0
|
CG
|
J:ASP140
|
2.9
|
54.1
|
1.0
|
HG3
|
J:GLU147
|
3.1
|
52.3
|
1.0
|
CD
|
J:GLU147
|
3.3
|
52.3
|
1.0
|
HB3
|
J:GLU138
|
3.3
|
49.0
|
1.0
|
CD
|
J:GLU138
|
3.4
|
49.0
|
1.0
|
P1
|
J:PC303
|
3.5
|
50.3
|
1.0
|
CD
|
J:GLN150
|
3.5
|
47.5
|
1.0
|
HE22
|
J:GLN150
|
3.5
|
47.5
|
1.0
|
O4
|
J:PC303
|
3.5
|
50.3
|
1.0
|
CG
|
J:GLU147
|
3.7
|
52.3
|
1.0
|
HG3
|
J:GLU138
|
3.7
|
49.0
|
1.0
|
CA
|
J:CA302
|
3.8
|
51.4
|
1.0
|
NE2
|
J:GLN150
|
3.9
|
47.5
|
1.0
|
CG
|
J:GLU138
|
3.9
|
49.0
|
1.0
|
CB
|
J:GLU138
|
4.1
|
49.0
|
1.0
|
OE2
|
J:GLU147
|
4.3
|
52.3
|
1.0
|
HB2
|
J:GLU147
|
4.3
|
52.3
|
1.0
|
OE2
|
J:GLU138
|
4.3
|
49.0
|
1.0
|
HG2
|
J:GLU147
|
4.4
|
52.3
|
1.0
|
CB
|
J:ASP140
|
4.4
|
54.1
|
1.0
|
O2
|
J:PC303
|
4.4
|
50.3
|
1.0
|
O
|
J:GLU138
|
4.4
|
49.0
|
1.0
|
O3
|
J:PC303
|
4.5
|
50.3
|
1.0
|
C
|
J:GLU138
|
4.6
|
49.0
|
1.0
|
CB
|
J:GLU147
|
4.6
|
52.3
|
1.0
|
HB2
|
J:GLU138
|
4.7
|
49.0
|
1.0
|
HE21
|
J:GLN150
|
4.7
|
47.5
|
1.0
|
HB2
|
J:ASP140
|
4.7
|
54.1
|
1.0
|
CG
|
J:GLN150
|
4.8
|
47.5
|
1.0
|
C
|
J:GLN139
|
4.8
|
50.0
|
1.0
|
O
|
J:GLN139
|
4.8
|
50.0
|
1.0
|
O
|
J:ASN145
|
4.8
|
54.1
|
1.0
|
HG2
|
J:GLU138
|
4.9
|
49.0
|
1.0
|
HB2
|
J:GLN150
|
4.9
|
47.5
|
1.0
|
N
|
J:GLN139
|
4.9
|
50.0
|
1.0
|
HB3
|
J:ASP140
|
4.9
|
54.1
|
1.0
|
CA
|
J:GLU138
|
5.0
|
49.0
|
1.0
|
H
|
J:GLU147
|
5.0
|
52.3
|
1.0
|
|
Calcium binding site 2 out
of 20 in 7pkh
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Calcium Binding Sites List in 7pkh
Calcium binding site 2 out
of 20 in the C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca302
b:51.4
occ:1.00
|
O4
|
J:PC303
|
2.2
|
50.3
|
1.0
|
OD2
|
J:ASP60
|
2.3
|
54.8
|
1.0
|
OE2
|
J:GLU138
|
2.4
|
49.0
|
1.0
|
OD2
|
J:ASP140
|
2.4
|
54.1
|
1.0
|
OD1
|
J:ASN61
|
2.5
|
51.4
|
1.0
|
OE1
|
J:GLU138
|
2.5
|
49.0
|
1.0
|
O
|
J:GLN139
|
2.5
|
50.0
|
1.0
|
CD
|
J:GLU138
|
2.7
|
49.0
|
1.0
|
HA
|
J:ASP140
|
3.0
|
54.1
|
1.0
|
CG
|
J:ASP140
|
3.4
|
54.1
|
1.0
|
C
|
J:GLN139
|
3.4
|
50.0
|
1.0
|
CG
|
J:ASP60
|
3.5
|
54.8
|
1.0
|
CG
|
J:ASN61
|
3.5
|
51.4
|
1.0
|
HB2
|
J:ASP60
|
3.6
|
54.8
|
1.0
|
P1
|
J:PC303
|
3.7
|
50.3
|
1.0
|
CA
|
J:ASP140
|
3.8
|
54.1
|
1.0
|
CA
|
J:CA301
|
3.8
|
52.8
|
1.0
|
ND2
|
J:ASN61
|
3.9
|
51.4
|
1.0
|
N
|
J:ASP140
|
4.0
|
54.1
|
1.0
|
CB
|
J:ASP60
|
4.0
|
54.8
|
1.0
|
O
|
J:ASP60
|
4.1
|
54.8
|
1.0
|
O1
|
J:PC303
|
4.1
|
50.3
|
1.0
|
CB
|
J:ASP140
|
4.1
|
54.1
|
1.0
|
CG
|
J:GLU138
|
4.2
|
49.0
|
1.0
|
H
|
J:GLN139
|
4.2
|
50.0
|
1.0
|
OD1
|
J:ASP140
|
4.3
|
54.1
|
1.0
|
C
|
J:ASP60
|
4.4
|
54.8
|
1.0
|
HG3
|
J:GLU138
|
4.4
|
49.0
|
1.0
|
N
|
J:GLN139
|
4.4
|
50.0
|
1.0
|
HB3
|
J:ASP140
|
4.4
|
54.1
|
1.0
|
OD1
|
J:ASP60
|
4.4
|
54.8
|
1.0
|
HD23
|
J:LEU64
|
4.5
|
45.6
|
1.0
|
O3
|
J:PC303
|
4.5
|
50.3
|
1.0
|
CA
|
J:GLN139
|
4.5
|
50.0
|
1.0
|
HG2
|
J:GLU138
|
4.6
|
49.0
|
1.0
|
HD21
|
J:ASN61
|
4.7
|
51.4
|
1.0
|
O2
|
J:PC303
|
4.7
|
50.3
|
1.0
|
HA
|
J:ASN61
|
4.8
|
51.4
|
1.0
|
N
|
J:ASN61
|
4.8
|
51.4
|
1.0
|
HB3
|
J:ASP60
|
4.8
|
54.8
|
1.0
|
H11
|
J:PC303
|
4.8
|
50.3
|
1.0
|
H
|
J:ASP140
|
4.8
|
54.1
|
1.0
|
CB
|
J:ASN61
|
4.8
|
51.4
|
1.0
|
CA
|
J:ASP60
|
4.9
|
54.8
|
1.0
|
HB2
|
J:ASP140
|
5.0
|
54.1
|
1.0
|
|
Calcium binding site 3 out
of 20 in 7pkh
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Calcium Binding Sites List in 7pkh
Calcium binding site 3 out
of 20 in the C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca301
b:43.1
occ:1.00
|
OE1
|
F:GLU138
|
2.2
|
44.5
|
1.0
|
OE1
|
F:GLN150
|
2.4
|
44.0
|
1.0
|
OD1
|
F:ASP140
|
2.4
|
48.2
|
1.0
|
O1
|
F:PC303
|
2.4
|
44.8
|
1.0
|
OD2
|
F:ASP140
|
2.8
|
48.2
|
1.0
|
CG
|
F:ASP140
|
3.0
|
48.2
|
1.0
|
OE2
|
F:GLU147
|
3.3
|
48.9
|
1.0
|
CD
|
F:GLN150
|
3.3
|
44.0
|
1.0
|
HE22
|
F:GLN150
|
3.4
|
44.0
|
1.0
|
CD
|
F:GLU138
|
3.4
|
44.5
|
1.0
|
O4
|
F:PC303
|
3.4
|
44.8
|
1.0
|
HG3
|
F:GLU147
|
3.5
|
48.9
|
1.0
|
HB2
|
F:GLU147
|
3.5
|
48.9
|
1.0
|
P1
|
F:PC303
|
3.5
|
44.8
|
1.0
|
CD
|
F:GLU147
|
3.7
|
48.9
|
1.0
|
HB3
|
F:GLU138
|
3.7
|
44.5
|
1.0
|
NE2
|
F:GLN150
|
3.7
|
44.0
|
1.0
|
CG
|
F:GLU147
|
3.9
|
48.9
|
1.0
|
OE2
|
F:GLU138
|
4.1
|
44.5
|
1.0
|
CA
|
F:CA302
|
4.2
|
47.9
|
1.0
|
CB
|
F:GLU147
|
4.2
|
48.9
|
1.0
|
O2
|
F:PC303
|
4.3
|
44.8
|
1.0
|
CG
|
F:GLU138
|
4.3
|
44.5
|
1.0
|
OE1
|
F:GLU147
|
4.4
|
48.9
|
1.0
|
HG3
|
F:GLU138
|
4.4
|
44.5
|
1.0
|
CB
|
F:ASP140
|
4.4
|
48.2
|
1.0
|
CB
|
F:GLU138
|
4.5
|
44.5
|
1.0
|
HE21
|
F:GLN150
|
4.6
|
44.0
|
1.0
|
H11
|
F:PC303
|
4.6
|
44.8
|
1.0
|
HB2
|
F:GLN150
|
4.6
|
44.0
|
1.0
|
CG
|
F:GLN150
|
4.6
|
44.0
|
1.0
|
O
|
F:GLU138
|
4.7
|
44.5
|
1.0
|
O3
|
F:PC303
|
4.7
|
44.8
|
1.0
|
HB2
|
F:ASP140
|
4.7
|
48.2
|
1.0
|
H
|
F:GLU147
|
4.8
|
48.9
|
1.0
|
HB3
|
F:GLU147
|
4.8
|
48.9
|
1.0
|
HG3
|
F:GLN150
|
4.8
|
44.0
|
1.0
|
HG2
|
F:GLU147
|
4.9
|
48.9
|
1.0
|
O
|
F:ASN145
|
4.9
|
50.0
|
1.0
|
C
|
F:GLU138
|
4.9
|
44.5
|
1.0
|
HB3
|
F:ASP140
|
4.9
|
48.2
|
1.0
|
|
Calcium binding site 4 out
of 20 in 7pkh
Go back to
Calcium Binding Sites List in 7pkh
Calcium binding site 4 out
of 20 in the C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca302
b:47.9
occ:1.00
|
OE2
|
F:GLU138
|
2.1
|
44.5
|
1.0
|
OD2
|
F:ASP60
|
2.1
|
46.4
|
1.0
|
OD2
|
F:ASP140
|
2.2
|
48.2
|
1.0
|
O4
|
F:PC303
|
2.3
|
44.8
|
1.0
|
OD1
|
F:ASN61
|
2.3
|
44.2
|
1.0
|
O
|
F:GLN139
|
2.5
|
45.1
|
1.0
|
HA
|
F:ASP140
|
2.8
|
48.2
|
1.0
|
CD
|
F:GLU138
|
2.9
|
44.5
|
1.0
|
OE1
|
F:GLU138
|
3.1
|
44.5
|
1.0
|
CG
|
F:ASP60
|
3.2
|
46.4
|
1.0
|
CG
|
F:ASN61
|
3.3
|
44.2
|
1.0
|
CG
|
F:ASP140
|
3.3
|
48.2
|
1.0
|
C
|
F:GLN139
|
3.4
|
45.1
|
1.0
|
HB2
|
F:ASP60
|
3.4
|
46.4
|
1.0
|
CA
|
F:ASP140
|
3.6
|
48.2
|
1.0
|
ND2
|
F:ASN61
|
3.6
|
44.2
|
1.0
|
P1
|
F:PC303
|
3.8
|
44.8
|
1.0
|
N
|
F:ASP140
|
3.8
|
48.2
|
1.0
|
CB
|
F:ASP60
|
3.9
|
46.4
|
1.0
|
CB
|
F:ASP140
|
4.0
|
48.2
|
1.0
|
H11
|
F:PC303
|
4.1
|
44.8
|
1.0
|
O
|
F:ASP60
|
4.1
|
46.4
|
1.0
|
OD1
|
F:ASP60
|
4.2
|
46.4
|
1.0
|
CA
|
F:CA301
|
4.2
|
43.1
|
1.0
|
HB3
|
F:ASP140
|
4.3
|
48.2
|
1.0
|
O3
|
F:PC303
|
4.3
|
44.8
|
1.0
|
OD1
|
F:ASP140
|
4.3
|
48.2
|
1.0
|
O1
|
F:PC303
|
4.3
|
44.8
|
1.0
|
C
|
F:ASP60
|
4.3
|
46.4
|
1.0
|
H
|
F:GLN139
|
4.3
|
45.1
|
1.0
|
CG
|
F:GLU138
|
4.3
|
44.5
|
1.0
|
HD21
|
F:ASN61
|
4.5
|
44.2
|
1.0
|
N
|
F:GLN139
|
4.5
|
45.1
|
1.0
|
HG2
|
F:GLU138
|
4.5
|
44.5
|
1.0
|
CA
|
F:GLN139
|
4.5
|
45.1
|
1.0
|
H12
|
F:PC303
|
4.6
|
44.8
|
1.0
|
HB3
|
F:ASP60
|
4.6
|
46.4
|
1.0
|
H
|
F:ASP140
|
4.7
|
48.2
|
1.0
|
CB
|
F:ASN61
|
4.7
|
44.2
|
1.0
|
N
|
F:ASN61
|
4.7
|
44.2
|
1.0
|
HA
|
F:ASN61
|
4.7
|
44.2
|
1.0
|
HG3
|
F:GLU138
|
4.7
|
44.5
|
1.0
|
C1
|
F:PC303
|
4.7
|
44.8
|
1.0
|
CA
|
F:ASP60
|
4.8
|
46.4
|
1.0
|
HD23
|
F:LEU64
|
4.8
|
39.3
|
1.0
|
HB2
|
F:ASP140
|
4.8
|
48.2
|
1.0
|
C
|
F:ASP140
|
4.8
|
48.2
|
1.0
|
O2
|
F:PC303
|
4.9
|
44.8
|
1.0
|
CA
|
F:ASN61
|
5.0
|
44.2
|
1.0
|
|
Calcium binding site 5 out
of 20 in 7pkh
Go back to
Calcium Binding Sites List in 7pkh
Calcium binding site 5 out
of 20 in the C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca301
b:63.2
occ:1.00
|
OE1
|
G:GLU138
|
2.2
|
57.9
|
1.0
|
OE1
|
G:GLU147
|
2.3
|
62.7
|
1.0
|
OE1
|
G:GLN150
|
2.4
|
57.3
|
1.0
|
OD2
|
G:ASP140
|
2.4
|
60.6
|
1.0
|
OD1
|
G:ASP140
|
2.5
|
60.6
|
1.0
|
HG3
|
G:GLU147
|
2.8
|
62.7
|
1.0
|
CG
|
G:ASP140
|
2.8
|
60.6
|
1.0
|
CD
|
G:GLU147
|
3.1
|
62.7
|
1.0
|
O3
|
G:PC303
|
3.3
|
57.1
|
1.0
|
CD
|
G:GLU138
|
3.4
|
57.9
|
1.0
|
CD
|
G:GLN150
|
3.4
|
57.3
|
1.0
|
HE22
|
G:GLN150
|
3.4
|
57.3
|
1.0
|
CG
|
G:GLU147
|
3.4
|
62.7
|
1.0
|
O1
|
G:PC303
|
3.6
|
57.1
|
1.0
|
HB3
|
G:GLU138
|
3.6
|
57.9
|
1.0
|
NE2
|
G:GLN150
|
3.7
|
57.3
|
1.0
|
P1
|
G:PC303
|
3.8
|
57.1
|
1.0
|
O4
|
G:PC303
|
3.9
|
57.1
|
1.0
|
HG2
|
G:GLU147
|
4.1
|
62.7
|
1.0
|
OE2
|
G:GLU138
|
4.1
|
57.9
|
1.0
|
CA
|
G:CA302
|
4.1
|
63.0
|
1.0
|
HB2
|
G:GLU147
|
4.2
|
62.7
|
1.0
|
OE2
|
G:GLU147
|
4.3
|
62.7
|
1.0
|
CB
|
G:ASP140
|
4.3
|
60.6
|
1.0
|
CG
|
G:GLU138
|
4.3
|
57.9
|
1.0
|
O
|
G:GLU138
|
4.4
|
57.9
|
1.0
|
HG3
|
G:GLU138
|
4.4
|
57.9
|
1.0
|
CB
|
G:GLU138
|
4.4
|
57.9
|
1.0
|
CB
|
G:GLU147
|
4.4
|
62.7
|
1.0
|
HE21
|
G:GLN150
|
4.6
|
57.3
|
1.0
|
HB2
|
G:ASP140
|
4.6
|
60.6
|
1.0
|
O
|
G:ASN145
|
4.6
|
62.7
|
1.0
|
CG
|
G:GLN150
|
4.7
|
57.3
|
1.0
|
H
|
G:GLU147
|
4.7
|
62.7
|
1.0
|
HB3
|
G:ASP140
|
4.8
|
60.6
|
1.0
|
HG3
|
G:GLN150
|
4.8
|
57.3
|
1.0
|
C
|
G:GLU138
|
4.8
|
57.9
|
1.0
|
HB2
|
G:GLN150
|
4.8
|
57.3
|
1.0
|
HA
|
G:ASP140
|
4.9
|
60.6
|
1.0
|
N
|
G:ASP140
|
4.9
|
60.6
|
1.0
|
H21
|
G:PC303
|
5.0
|
57.1
|
1.0
|
CA
|
G:ASP140
|
5.0
|
60.6
|
1.0
|
|
Calcium binding site 6 out
of 20 in 7pkh
Go back to
Calcium Binding Sites List in 7pkh
Calcium binding site 6 out
of 20 in the C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca302
b:63.0
occ:1.00
|
OE2
|
G:GLU138
|
2.1
|
57.9
|
1.0
|
OD2
|
G:ASP60
|
2.2
|
60.2
|
1.0
|
OD1
|
G:ASP140
|
2.2
|
60.6
|
1.0
|
O4
|
G:PC303
|
2.3
|
57.1
|
1.0
|
OD1
|
G:ASN61
|
2.4
|
57.9
|
1.0
|
HA
|
G:ASP140
|
2.5
|
60.6
|
1.0
|
O
|
G:GLN139
|
2.7
|
58.5
|
1.0
|
CD
|
G:GLU138
|
3.0
|
57.9
|
1.0
|
OE1
|
G:GLU138
|
3.1
|
57.9
|
1.0
|
O1
|
G:PC303
|
3.3
|
57.1
|
1.0
|
CG
|
G:ASP60
|
3.3
|
60.2
|
1.0
|
CG
|
G:ASP140
|
3.3
|
60.6
|
1.0
|
CG
|
G:ASN61
|
3.3
|
57.9
|
1.0
|
CA
|
G:ASP140
|
3.4
|
60.6
|
1.0
|
P1
|
G:PC303
|
3.4
|
57.1
|
1.0
|
HB2
|
G:ASP60
|
3.4
|
60.2
|
1.0
|
C
|
G:GLN139
|
3.5
|
58.5
|
1.0
|
ND2
|
G:ASN61
|
3.6
|
57.9
|
1.0
|
N
|
G:ASP140
|
3.8
|
60.6
|
1.0
|
CB
|
G:ASP140
|
3.8
|
60.6
|
1.0
|
CB
|
G:ASP60
|
3.9
|
60.2
|
1.0
|
HB3
|
G:ASP140
|
4.1
|
60.6
|
1.0
|
CA
|
G:CA301
|
4.1
|
63.2
|
1.0
|
O
|
G:ASP60
|
4.2
|
60.2
|
1.0
|
C
|
G:ASP60
|
4.3
|
60.2
|
1.0
|
OD1
|
G:ASP60
|
4.4
|
60.2
|
1.0
|
CG
|
G:GLU138
|
4.4
|
57.9
|
1.0
|
OD2
|
G:ASP140
|
4.4
|
60.6
|
1.0
|
HD21
|
G:ASN61
|
4.5
|
57.9
|
1.0
|
O2
|
G:PC303
|
4.5
|
57.1
|
1.0
|
O3
|
G:PC303
|
4.5
|
57.1
|
1.0
|
C
|
G:ASP140
|
4.6
|
60.6
|
1.0
|
H
|
G:ASP140
|
4.6
|
60.6
|
1.0
|
HG2
|
G:GLU138
|
4.6
|
57.9
|
1.0
|
HB3
|
G:ASP60
|
4.6
|
60.2
|
1.0
|
HD23
|
G:LEU64
|
4.7
|
52.2
|
1.0
|
CB
|
G:ASN61
|
4.7
|
57.9
|
1.0
|
H
|
G:GLN139
|
4.7
|
58.5
|
1.0
|
HB2
|
G:ASP140
|
4.7
|
60.6
|
1.0
|
HG3
|
G:GLU138
|
4.7
|
57.9
|
1.0
|
CA
|
G:GLN139
|
4.7
|
58.5
|
1.0
|
N
|
G:GLN139
|
4.7
|
58.5
|
1.0
|
N
|
G:ASN61
|
4.8
|
57.9
|
1.0
|
HA
|
G:ASN61
|
4.8
|
57.9
|
1.0
|
CA
|
G:ASP60
|
4.8
|
60.2
|
1.0
|
O
|
G:ASP140
|
4.8
|
60.6
|
1.0
|
|
Calcium binding site 7 out
of 20 in 7pkh
Go back to
Calcium Binding Sites List in 7pkh
Calcium binding site 7 out
of 20 in the C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca301
b:69.2
occ:1.00
|
OE1
|
H:GLU138
|
2.2
|
65.6
|
1.0
|
OD1
|
H:ASP140
|
2.2
|
70.1
|
1.0
|
OD2
|
H:ASP140
|
2.4
|
70.1
|
1.0
|
O1
|
H:PC303
|
2.6
|
64.7
|
1.0
|
OE1
|
H:GLN150
|
2.6
|
64.7
|
1.0
|
CG
|
H:ASP140
|
2.7
|
70.1
|
1.0
|
O3
|
H:PC303
|
2.7
|
64.7
|
1.0
|
P1
|
H:PC303
|
3.1
|
64.7
|
1.0
|
CD
|
H:GLU147
|
3.2
|
69.8
|
1.0
|
CD
|
H:GLU138
|
3.2
|
65.6
|
1.0
|
OE2
|
H:GLU147
|
3.3
|
69.8
|
1.0
|
HG3
|
H:GLU147
|
3.3
|
69.8
|
1.0
|
OE1
|
H:GLU147
|
3.4
|
69.8
|
1.0
|
HE22
|
H:GLN150
|
3.4
|
64.7
|
1.0
|
CD
|
H:GLN150
|
3.5
|
64.7
|
1.0
|
O4
|
H:PC303
|
3.6
|
64.7
|
1.0
|
CG
|
H:GLU147
|
3.8
|
69.8
|
1.0
|
NE2
|
H:GLN150
|
3.8
|
64.7
|
1.0
|
OE2
|
H:GLU138
|
3.9
|
65.6
|
1.0
|
HB3
|
H:GLU138
|
4.0
|
65.6
|
1.0
|
HB2
|
H:GLU147
|
4.0
|
69.8
|
1.0
|
CA
|
H:CA302
|
4.0
|
71.1
|
1.0
|
CB
|
H:ASP140
|
4.2
|
70.1
|
1.0
|
CG
|
H:GLU138
|
4.3
|
65.6
|
1.0
|
HG3
|
H:GLU138
|
4.3
|
65.6
|
1.0
|
CB
|
H:GLU147
|
4.5
|
69.8
|
1.0
|
HB3
|
H:ASP140
|
4.5
|
70.1
|
1.0
|
HB2
|
H:ASP140
|
4.5
|
70.1
|
1.0
|
O2
|
H:PC303
|
4.6
|
64.7
|
1.0
|
HG2
|
H:GLU147
|
4.6
|
69.8
|
1.0
|
CB
|
H:GLU138
|
4.6
|
65.6
|
1.0
|
HE21
|
H:GLN150
|
4.7
|
64.7
|
1.0
|
CG
|
H:GLN150
|
4.8
|
64.7
|
1.0
|
HG3
|
H:GLN150
|
4.9
|
64.7
|
1.0
|
O
|
H:GLU138
|
4.9
|
65.6
|
1.0
|
H21
|
H:PC303
|
4.9
|
64.7
|
1.0
|
HA
|
H:ASP140
|
4.9
|
70.1
|
1.0
|
H
|
H:GLU147
|
5.0
|
69.8
|
1.0
|
HB3
|
H:GLU147
|
5.0
|
69.8
|
1.0
|
|
Calcium binding site 8 out
of 20 in 7pkh
Go back to
Calcium Binding Sites List in 7pkh
Calcium binding site 8 out
of 20 in the C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca302
b:71.1
occ:1.00
|
OE2
|
H:GLU138
|
2.1
|
65.6
|
1.0
|
OD2
|
H:ASP60
|
2.1
|
69.8
|
1.0
|
OD2
|
H:ASP140
|
2.2
|
70.1
|
1.0
|
O
|
H:GLN139
|
2.3
|
67.8
|
1.0
|
OD1
|
H:ASN61
|
2.6
|
65.8
|
1.0
|
O4
|
H:PC303
|
2.6
|
64.7
|
1.0
|
HA
|
H:ASP140
|
2.7
|
70.1
|
1.0
|
CD
|
H:GLU138
|
2.9
|
65.6
|
1.0
|
OE1
|
H:GLU138
|
3.1
|
65.6
|
1.0
|
C
|
H:GLN139
|
3.2
|
67.8
|
1.0
|
CG
|
H:ASP140
|
3.3
|
70.1
|
1.0
|
CG
|
H:ASP60
|
3.3
|
69.8
|
1.0
|
CG
|
H:ASN61
|
3.4
|
65.8
|
1.0
|
CA
|
H:ASP140
|
3.5
|
70.1
|
1.0
|
HB2
|
H:ASP60
|
3.5
|
69.8
|
1.0
|
O1
|
H:PC303
|
3.6
|
64.7
|
1.0
|
ND2
|
H:ASN61
|
3.7
|
65.8
|
1.0
|
P1
|
H:PC303
|
3.7
|
64.7
|
1.0
|
N
|
H:ASP140
|
3.7
|
70.1
|
1.0
|
CB
|
H:ASP140
|
3.9
|
70.1
|
1.0
|
CA
|
H:CA301
|
4.0
|
69.2
|
1.0
|
CB
|
H:ASP60
|
4.0
|
69.8
|
1.0
|
H
|
H:GLN139
|
4.1
|
67.8
|
1.0
|
OD1
|
H:ASP140
|
4.2
|
70.1
|
1.0
|
O
|
H:ASP60
|
4.2
|
69.8
|
1.0
|
N
|
H:GLN139
|
4.3
|
67.8
|
1.0
|
HB3
|
H:ASP140
|
4.3
|
70.1
|
1.0
|
OD1
|
H:ASP60
|
4.3
|
69.8
|
1.0
|
CG
|
H:GLU138
|
4.4
|
65.6
|
1.0
|
CA
|
H:GLN139
|
4.4
|
67.8
|
1.0
|
C
|
H:ASP60
|
4.5
|
69.8
|
1.0
|
HD21
|
H:ASN61
|
4.5
|
65.8
|
1.0
|
HG2
|
H:GLU138
|
4.5
|
65.6
|
1.0
|
H
|
H:ASP140
|
4.6
|
70.1
|
1.0
|
HB3
|
H:ASP60
|
4.7
|
69.8
|
1.0
|
O3
|
H:PC303
|
4.7
|
64.7
|
1.0
|
C
|
H:ASP140
|
4.7
|
70.1
|
1.0
|
HB2
|
H:ASP140
|
4.7
|
70.1
|
1.0
|
HD23
|
H:LEU64
|
4.7
|
60.7
|
1.0
|
HG
|
H:SER53
|
4.8
|
62.8
|
1.0
|
HG3
|
H:GLU138
|
4.8
|
65.6
|
1.0
|
CB
|
H:ASN61
|
4.8
|
65.8
|
1.0
|
N
|
H:ASN61
|
4.9
|
65.8
|
1.0
|
HB3
|
H:GLN139
|
4.9
|
67.8
|
1.0
|
O2
|
H:PC303
|
4.9
|
64.7
|
1.0
|
C
|
H:GLU138
|
4.9
|
65.6
|
1.0
|
CA
|
H:ASP60
|
4.9
|
69.8
|
1.0
|
HA
|
H:ASN61
|
4.9
|
65.8
|
1.0
|
O
|
H:ASP140
|
4.9
|
70.1
|
1.0
|
|
Calcium binding site 9 out
of 20 in 7pkh
Go back to
Calcium Binding Sites List in 7pkh
Calcium binding site 9 out
of 20 in the C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca301
b:61.8
occ:1.00
|
OD1
|
I:ASP140
|
2.3
|
69.0
|
1.0
|
HG3
|
I:GLU147
|
2.4
|
66.9
|
1.0
|
OD2
|
I:ASP140
|
2.4
|
69.0
|
1.0
|
OE2
|
I:GLU147
|
2.7
|
66.9
|
1.0
|
CG
|
I:ASP140
|
2.7
|
69.0
|
1.0
|
HG2
|
I:GLU138
|
2.7
|
63.6
|
1.0
|
OE1
|
I:GLN150
|
2.8
|
62.0
|
1.0
|
O1
|
I:PC303
|
2.9
|
64.4
|
1.0
|
HG3
|
I:GLU138
|
3.0
|
63.6
|
1.0
|
CD
|
I:GLU147
|
3.0
|
66.9
|
1.0
|
CG
|
I:GLU147
|
3.1
|
66.9
|
1.0
|
O4
|
I:PC303
|
3.2
|
64.4
|
1.0
|
P1
|
I:PC303
|
3.3
|
64.4
|
1.0
|
O3
|
I:PC303
|
3.3
|
64.4
|
1.0
|
CG
|
I:GLU138
|
3.3
|
63.6
|
1.0
|
HG2
|
I:GLU147
|
3.6
|
66.9
|
1.0
|
CD
|
I:GLN150
|
3.7
|
62.0
|
1.0
|
HE22
|
I:GLN150
|
3.7
|
62.0
|
1.0
|
CA
|
I:CA302
|
3.9
|
65.4
|
1.0
|
OE1
|
I:GLU147
|
3.9
|
66.9
|
1.0
|
HB3
|
I:GLU138
|
4.0
|
63.6
|
1.0
|
NE2
|
I:GLN150
|
4.1
|
62.0
|
1.0
|
HB2
|
I:GLU147
|
4.2
|
66.9
|
1.0
|
CB
|
I:ASP140
|
4.2
|
69.0
|
1.0
|
O
|
I:GLU138
|
4.3
|
63.6
|
1.0
|
CB
|
I:GLU138
|
4.3
|
63.6
|
1.0
|
CB
|
I:GLU147
|
4.3
|
66.9
|
1.0
|
CD
|
I:GLU138
|
4.4
|
63.6
|
1.0
|
H21
|
I:PC303
|
4.4
|
64.4
|
1.0
|
OE2
|
I:GLU138
|
4.5
|
63.6
|
1.0
|
O
|
I:ASN145
|
4.5
|
70.7
|
1.0
|
HB3
|
I:ASP140
|
4.6
|
69.0
|
1.0
|
HB2
|
I:ASP140
|
4.6
|
69.0
|
1.0
|
C
|
I:GLU138
|
4.7
|
63.6
|
1.0
|
HB2
|
I:GLN150
|
4.8
|
62.0
|
1.0
|
HB3
|
I:GLU147
|
4.8
|
66.9
|
1.0
|
HE21
|
I:GLN150
|
4.9
|
62.0
|
1.0
|
O2
|
I:PC303
|
4.9
|
64.4
|
1.0
|
N
|
I:ASP140
|
4.9
|
69.0
|
1.0
|
CG
|
I:GLN150
|
4.9
|
62.0
|
1.0
|
HA
|
I:ASP140
|
4.9
|
69.0
|
1.0
|
HB2
|
I:GLU138
|
4.9
|
63.6
|
1.0
|
C
|
I:GLN139
|
4.9
|
65.9
|
1.0
|
CA
|
I:ASP140
|
5.0
|
69.0
|
1.0
|
H
|
I:GLU147
|
5.0
|
66.9
|
1.0
|
|
Calcium binding site 10 out
of 20 in 7pkh
Go back to
Calcium Binding Sites List in 7pkh
Calcium binding site 10 out
of 20 in the C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of C-Reactive Protein Decamer at pH 5 with Phosphocholine Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca302
b:65.4
occ:1.00
|
OE2
|
I:GLU138
|
2.3
|
63.6
|
1.0
|
OD1
|
I:ASP140
|
2.3
|
69.0
|
1.0
|
O4
|
I:PC303
|
2.4
|
64.4
|
1.0
|
OD1
|
I:ASN61
|
2.5
|
65.8
|
1.0
|
O
|
I:GLN139
|
2.6
|
65.9
|
1.0
|
O3
|
I:PC303
|
2.6
|
64.4
|
1.0
|
OD2
|
I:ASP60
|
2.6
|
69.0
|
1.0
|
HA
|
I:ASP140
|
2.8
|
69.0
|
1.0
|
HG3
|
I:GLU138
|
3.0
|
63.6
|
1.0
|
P1
|
I:PC303
|
3.1
|
64.4
|
1.0
|
CD
|
I:GLU138
|
3.2
|
63.6
|
1.0
|
HB2
|
I:ASP60
|
3.3
|
69.0
|
1.0
|
C
|
I:GLN139
|
3.4
|
65.9
|
1.0
|
CG
|
I:ASP140
|
3.4
|
69.0
|
1.0
|
CG
|
I:GLU138
|
3.5
|
63.6
|
1.0
|
CG
|
I:ASP60
|
3.5
|
69.0
|
1.0
|
CG
|
I:ASN61
|
3.5
|
65.8
|
1.0
|
CA
|
I:ASP140
|
3.6
|
69.0
|
1.0
|
HG2
|
I:GLU138
|
3.7
|
63.6
|
1.0
|
N
|
I:ASP140
|
3.8
|
69.0
|
1.0
|
CA
|
I:CA301
|
3.9
|
61.8
|
1.0
|
ND2
|
I:ASN61
|
3.9
|
65.8
|
1.0
|
CB
|
I:ASP60
|
3.9
|
69.0
|
1.0
|
CB
|
I:ASP140
|
3.9
|
69.0
|
1.0
|
O2
|
I:PC303
|
3.9
|
64.4
|
1.0
|
HB3
|
I:ASP140
|
4.1
|
69.0
|
1.0
|
O1
|
I:PC303
|
4.3
|
64.4
|
1.0
|
OE1
|
I:GLU138
|
4.4
|
63.6
|
1.0
|
OD2
|
I:ASP140
|
4.5
|
69.0
|
1.0
|
O
|
I:ASP60
|
4.5
|
69.0
|
1.0
|
C
|
I:ASP60
|
4.5
|
69.0
|
1.0
|
N
|
I:GLN139
|
4.5
|
65.9
|
1.0
|
H
|
I:GLN139
|
4.5
|
65.9
|
1.0
|
HD23
|
I:LEU64
|
4.6
|
60.0
|
1.0
|
OD1
|
I:ASP60
|
4.6
|
69.0
|
1.0
|
CA
|
I:GLN139
|
4.6
|
65.9
|
1.0
|
HB3
|
I:ASP60
|
4.6
|
69.0
|
1.0
|
H
|
I:ASP140
|
4.6
|
69.0
|
1.0
|
H22
|
I:PC303
|
4.7
|
64.4
|
1.0
|
HD21
|
I:ASN61
|
4.7
|
65.8
|
1.0
|
H21
|
I:PC303
|
4.7
|
64.4
|
1.0
|
HA
|
I:ASN61
|
4.8
|
65.8
|
1.0
|
N
|
I:ASN61
|
4.8
|
65.8
|
1.0
|
C
|
I:ASP140
|
4.9
|
69.0
|
1.0
|
HB2
|
I:ASP140
|
4.9
|
69.0
|
1.0
|
CB
|
I:ASN61
|
4.9
|
65.8
|
1.0
|
CA
|
I:ASP60
|
4.9
|
69.0
|
1.0
|
C
|
I:GLU138
|
4.9
|
63.6
|
1.0
|
HG
|
I:SER53
|
4.9
|
60.9
|
1.0
|
CB
|
I:GLU138
|
5.0
|
63.6
|
1.0
|
|
Reference:
D.P.Noone,
T.T.Velden,
T.H.Sharp.
Cryo-Electron Microscopy and Biochemical Analysis Offer Insights Into the Effects of Acidic pH, Such As Occur During Acidosis, on the Complement Binding Properties of C-Reactive Protein Front Immunol 2021.
ISSN: ESSN 1664-3224
DOI: 10.3389/FIMMU.2021.757633
Page generated: Fri Jul 19 03:04:56 2024
|