Calcium in PDB 7pmv: Vwf Tubules of D1D2D'D3 Domains

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Calcium atom in the Vwf Tubules of D1D2D'D3 Domains (pdb code 7pmv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the Vwf Tubules of D1D2D'D3 Domains, PDB code: 7pmv:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 12 in the Vwf Tubules of D1D2D'D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Vwf Tubules of D1D2D'D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1305 b:118.8 occ:1.00 OD1 A:ASN166 2.2 109.0 1.0 OD2 A:ASP47 2.2 105.8 1.0 OD1 A:ASP172 2.2 109.9 1.0 O A:PHE168 2.4 112.3 1.0 OD2 A:ASP172 2.4 109.9 1.0 H A:ASN166 2.5 109.0 1.0 CG A:ASP172 2.6 109.9 1.0 O A:ASN166 2.7 109.0 1.0 OD1 A:ASN164 2.8 106.1 1.0 CG A:ASP47 3.2 105.8 1.0 CG A:ASN166 3.2 109.0 1.0 N A:ASN166 3.4 109.0 1.0 O A:ASN164 3.5 106.1 1.0 CG A:ASN164 3.5 106.1 1.0 C A:ASN166 3.6 109.0 1.0 C A:PHE168 3.6 112.3 1.0 HD21 A:ASN164 3.7 106.1 1.0 HA A:ALA169 3.9 109.2 1.0 HB2 A:ASP47 3.9 105.8 1.0 CA A:ASN166 3.9 109.0 1.0 ND2 A:ASN164 3.9 106.1 1.0 OD1 A:ASP47 4.0 105.8 1.0 C A:ASN164 4.0 106.1 1.0 HD21 A:ASN166 4.0 109.0 1.0 OD1 A:ASP171 4.0 115.8 1.0 CB A:ASP47 4.1 105.8 1.0 ND2 A:ASN166 4.1 109.0 1.0 HA A:PHE165 4.1 106.0 1.0 CB A:ASP172 4.1 109.9 1.0 CB A:ASN166 4.2 109.0 1.0 HB3 A:ASP47 4.3 105.8 1.0 H A:PHE168 4.3 112.3 1.0 N A:PHE168 4.4 112.3 1.0 HB2 A:PHE168 4.4 112.3 1.0 C A:PHE165 4.4 106.0 1.0 HB3 A:ASP172 4.4 109.9 1.0 HA A:ASP172 4.4 109.9 1.0 N A:PHE165 4.5 106.0 1.0 CA A:PHE168 4.5 112.3 1.0 CA A:PHE165 4.5 106.0 1.0 N A:ALA169 4.6 109.2 1.0 CB A:ASN164 4.6 106.1 1.0 CA A:ALA169 4.6 109.2 1.0 HD22 A:ASN164 4.6 106.1 1.0 HB2 A:ASP172 4.7 109.9 1.0 HB2 A:ASN166 4.7 109.0 1.0 HB2 A:ASN164 4.8 106.1 1.0 N A:ILE167 4.8 110.2 1.0 CA A:ASP172 4.8 109.9 1.0 CA A:ASN164 4.8 106.1 1.0 HB3 A:ASN166 4.8 109.0 1.0 C A:ILE167 4.8 110.2 1.0 HA A:ASN166 4.8 109.0 1.0 HD22 A:ASN166 4.8 109.0 1.0 CB A:PHE168 4.9 112.3 1.0 HB3 A:PHE168 5.0 112.3 1.0 CG A:ASP171 5.0 115.8 1.0

Calcium binding site 2 out of 12 in the Vwf Tubules of D1D2D'D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Vwf Tubules of D1D2D'D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1306 b:108.5 occ:1.00 OD1 A:ASP1000 2.2 96.9 1.0 H A:ILE1002 2.2 91.7 1.0 OD1 A:ASP1006 2.3 91.4 1.0 OD2 A:ASP879 2.3 92.6 1.0 O A:ILE1002 2.3 91.7 1.0 OD2 A:ASP1006 2.3 91.4 1.0 CG A:ASP1006 2.6 91.4 1.0 H A:ASP1000 2.6 96.9 1.0 OD1 A:ASN998 2.9 95.7 1.0 N A:ILE1002 2.9 91.7 1.0 CG A:ASP1000 3.0 96.9 1.0 C A:ILE1002 3.1 91.7 1.0 HB A:ILE1002 3.2 91.7 1.0 H A:GLY1001 3.3 96.1 1.0 OD1 A:ASN1005 3.4 92.1 1.0 CA A:ILE1002 3.4 91.7 1.0 N A:ASP1000 3.4 96.9 1.0 CG A:ASP879 3.4 92.6 1.0 N A:GLY1001 3.5 96.1 1.0 OD2 A:ASP1000 3.6 96.9 1.0 CB A:ILE1002 3.8 91.7 1.0 C A:ASP1000 3.8 96.9 1.0 CA A:ASP1000 3.9 96.9 1.0 HB2 A:ASP879 3.9 92.6 1.0 CG A:ASN998 4.0 95.7 1.0 C A:GLY1001 4.0 96.1 1.0 HD21 A:ASN998 4.0 95.7 1.0 CB A:ASP1006 4.0 91.4 1.0 CB A:ASP1000 4.0 96.9 1.0 H A:PHE999 4.1 95.3 1.0 CB A:ASP879 4.2 92.6 1.0 CA A:GLY1001 4.3 96.1 1.0 HG22 A:ILE1002 4.3 91.7 1.0 HB2 A:ASP1006 4.3 91.4 1.0 N A:GLN1003 4.3 89.7 1.0 HA A:ILE1002 4.3 91.7 1.0 OD1 A:ASP879 4.3 92.6 1.0 ND2 A:ASN998 4.4 95.7 1.0 N A:PHE999 4.4 95.3 1.0 HA A:GLN1003 4.4 89.7 1.0 HB3 A:ASP879 4.4 92.6 1.0 H A:ASN998 4.4 95.7 1.0 HA A:PHE999 4.5 95.3 1.0 HD21 A:ASN1005 4.5 92.1 1.0 CG A:ASN1005 4.5 92.1 1.0 O A:ASP1000 4.5 96.9 1.0 C A:PHE999 4.5 95.3 1.0 HB3 A:ASP1006 4.6 91.4 1.0 HB3 A:ASP1000 4.6 96.9 1.0 CG2 A:ILE1002 4.6 91.7 1.0 H A:ASP1006 4.6 91.4 1.0 HA2 A:GLY1001 4.7 96.1 1.0 HB2 A:ASP1000 4.7 96.9 1.0 CA A:PHE999 4.7 95.3 1.0 HA A:ASP1006 4.8 91.4 1.0 N A:ASP1006 4.8 91.4 1.0 CA A:ASP1006 4.8 91.4 1.0 HG13 A:ILE1002 4.8 91.7 1.0 HA A:ASP1000 4.9 96.9 1.0 CA A:GLN1003 4.9 89.7 1.0 ND2 A:ASN1005 4.9 92.1 1.0 CG1 A:ILE1002 5.0 91.7 1.0 H A:GLN1003 5.0 89.7 1.0

Calcium binding site 3 out of 12 in the Vwf Tubules of D1D2D'D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Vwf Tubules of D1D2D'D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1307 b:100.0 occ:1.00 OD1 A:ASN528 2.3 93.4 1.0 OD1 A:ASP533 2.3 96.7 1.0 O A:ASN530 2.4 93.1 1.0 OD1 A:ASP534 2.4 100.3 1.0 OD2 A:ASP400 2.4 89.2 1.0 OD1 A:ASN526 2.4 97.6 1.0 HD21 A:ASN528 3.0 93.4 1.0 CG A:ASN528 3.2 93.4 1.0 O A:ASN526 3.3 97.6 1.0 CG A:ASP534 3.4 100.3 1.0 ND2 A:ASN528 3.4 93.4 1.0 CG A:ASP533 3.5 96.7 1.0 C A:ASN530 3.6 93.1 1.0 CG A:ASN526 3.6 97.6 1.0 CG A:ASP400 3.7 89.2 1.0 HA A:GLN531 3.7 87.6 1.0 H A:ASP533 3.7 96.7 1.0 H A:ASN528 3.8 93.4 1.0 O A:ASP533 3.9 96.7 1.0 HA A:ASP534 4.0 100.3 1.0 OD2 A:ASP534 4.0 100.3 1.0 C A:ASP533 4.0 96.7 1.0 OD2 A:ASP533 4.0 96.7 1.0 HD21 A:ASN526 4.0 97.6 1.0 N A:ASP534 4.2 100.3 1.0 H A:ASN530 4.2 93.1 1.0 HB3 A:ASN530 4.2 93.1 1.0 OD1 A:ASP400 4.3 89.2 1.0 HD22 A:ASN528 4.3 93.4 1.0 ND2 A:ASN526 4.3 97.6 1.0 C A:ASN526 4.4 97.6 1.0 CA A:GLN531 4.4 87.6 1.0 CA A:ASP534 4.4 100.3 1.0 N A:ASP533 4.4 96.7 1.0 N A:GLN531 4.5 87.6 1.0 H A:ASN526 4.5 97.6 1.0 CB A:ASP534 4.5 100.3 1.0 H A:ASP534 4.6 100.3 1.0 CA A:ASP533 4.6 96.7 1.0 CB A:ASN528 4.6 93.4 1.0 N A:ASN528 4.6 93.4 1.0 CA A:ASN530 4.6 93.1 1.0 CB A:ASP533 4.6 96.7 1.0 HB2 A:ASP400 4.6 89.2 1.0 N A:ASN530 4.6 93.1 1.0 N A:ASN526 4.7 97.6 1.0 C A:GLN531 4.8 87.6 1.0 CB A:ASP400 4.8 89.2 1.0 CB A:ASN526 4.8 97.6 1.0 O A:ASN528 4.8 93.4 1.0 CA A:ASN526 4.9 97.6 1.0 CB A:ASN530 4.9 93.1 1.0 CA A:ASN528 5.0 93.4 1.0 C A:ASN528 5.0 93.4 1.0

Calcium binding site 4 out of 12 in the Vwf Tubules of D1D2D'D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Vwf Tubules of D1D2D'D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1305 b:113.3 occ:1.00 H B:ASP1000 2.0 93.2 1.0 OD2 B:ASP1006 2.3 88.0 1.0 OD1 B:ASP1000 2.3 93.2 1.0 OD1 B:ASN998 2.3 90.0 1.0 OD1 B:ASP1006 2.3 88.0 1.0 OD2 B:ASP879 2.3 89.0 1.0 CG B:ASP1000 2.6 93.2 1.0 CG B:ASP1006 2.6 88.0 1.0 N B:ASP1000 2.8 93.2 1.0 OD2 B:ASP1000 2.9 93.2 1.0 H B:ILE1002 3.0 88.3 1.0 H B:GLY1001 3.1 91.7 1.0 O B:ILE1002 3.1 88.3 1.0 CG B:ASP879 3.2 89.0 1.0 H B:PHE999 3.3 90.4 1.0 CB B:ASP1000 3.5 93.2 1.0 CA B:ASP1000 3.5 93.2 1.0 CG B:ASN998 3.5 90.0 1.0 N B:PHE999 3.5 90.4 1.0 N B:GLY1001 3.6 91.7 1.0 H B:ASN998 3.7 90.0 1.0 HA B:PHE999 3.7 90.4 1.0 N B:ILE1002 3.7 88.3 1.0 HB3 B:ASP1000 3.8 93.2 1.0 OD1 B:ASP879 3.8 89.0 1.0 C B:PHE999 3.8 90.4 1.0 C B:ASP1000 3.9 93.2 1.0 CA B:PHE999 3.9 90.4 1.0 OD1 B:ASN1005 3.9 88.2 1.0 HD21 B:ASN998 4.0 90.0 1.0 HB2 B:ASP879 4.0 89.0 1.0 C B:ILE1002 4.1 88.3 1.0 CB B:ASP1006 4.1 88.0 1.0 C B:ASN998 4.1 90.0 1.0 HB B:ILE1002 4.2 88.3 1.0 ND2 B:ASN998 4.2 90.0 1.0 CB B:ASP879 4.3 89.0 1.0 HB2 B:ASP1000 4.3 93.2 1.0 N B:ASN998 4.3 90.0 1.0 HA B:ASP1000 4.4 93.2 1.0 HB3 B:ASP1006 4.4 88.0 1.0 CA B:ILE1002 4.4 88.3 1.0 HB2 B:ASP1006 4.6 88.0 1.0 CA B:ASN998 4.6 90.0 1.0 CA B:GLY1001 4.6 91.7 1.0 C B:GLY1001 4.6 91.7 1.0 CB B:ASN998 4.6 90.0 1.0 HB3 B:ASP879 4.7 89.0 1.0 HA B:ASP1006 4.7 88.0 1.0 HD21 B:ASN1005 4.8 88.2 1.0 O B:ASN998 4.8 90.0 1.0 CB B:ILE1002 4.8 88.3 1.0 O B:ASP1000 4.9 93.2 1.0 CA B:ASP1006 4.9 88.0 1.0 HA2 B:GLY1001 4.9 91.7 1.0 O B:PHE999 5.0 90.4 1.0 CG B:ASN1005 5.0 88.2 1.0 HA B:GLN1003 5.0 84.9 1.0 HA3 B:GLY997 5.0 86.8 1.0

Calcium binding site 5 out of 12 in the Vwf Tubules of D1D2D'D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Vwf Tubules of D1D2D'D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1306 b:113.3 occ:1.00 OD1 B:ASN166 2.2 110.7 1.0 OD2 B:ASP47 2.2 105.7 1.0 OD1 B:ASP172 2.2 112.0 1.0 OD1 B:ASN164 2.3 107.2 1.0 O B:PHE168 2.6 116.5 1.0 CG B:ASP172 2.9 112.0 1.0 H B:ASN166 2.9 110.7 1.0 OD2 B:ASP172 3.0 112.0 1.0 O B:ASN164 3.0 107.2 1.0 CG B:ASN166 3.1 110.7 1.0 O B:ASN166 3.2 110.7 1.0 CG B:ASN164 3.4 107.2 1.0 CG B:ASP47 3.5 105.7 1.0 OD1 B:ASP171 3.5 115.8 1.0 HD21 B:ASN166 3.5 110.7 1.0 HA B:ALA169 3.7 112.4 1.0 N B:ASN166 3.7 110.7 1.0 ND2 B:ASN166 3.7 110.7 1.0 C B:PHE168 3.9 116.5 1.0 C B:ASN164 3.9 107.2 1.0 HD21 B:ASN164 4.0 107.2 1.0 C B:ASN166 4.0 110.7 1.0 ND2 B:ASN164 4.2 107.2 1.0 CA B:ASN166 4.2 110.7 1.0 OD1 B:ASP47 4.2 105.7 1.0 CB B:ASN166 4.3 110.7 1.0 HB2 B:ASP47 4.3 105.7 1.0 CB B:ASP172 4.3 112.0 1.0 HA B:ASP172 4.3 112.0 1.0 HA B:PHE165 4.5 107.5 1.0 CB B:ASN164 4.5 107.2 1.0 CB B:ASP47 4.5 105.7 1.0 CA B:ALA169 4.5 112.4 1.0 HD22 B:ASN166 4.5 110.7 1.0 HB3 B:PHE168 4.6 116.5 1.0 HB2 B:ASN164 4.6 107.2 1.0 N B:ALA169 4.6 112.4 1.0 CA B:ASN164 4.6 107.2 1.0 N B:PHE165 4.7 107.5 1.0 H B:ASP171 4.7 115.8 1.0 HB3 B:ASP172 4.7 112.0 1.0 CG B:ASP171 4.7 115.8 1.0 C B:PHE165 4.7 107.5 1.0 HB3 B:ASP47 4.8 105.7 1.0 CA B:ASP172 4.8 112.0 1.0 H B:ASN164 4.8 107.2 1.0 HB3 B:ASN166 4.8 110.7 1.0 HD2 B:PHE168 4.9 116.5 1.0 CA B:PHE165 4.9 107.5 1.0 HB2 B:ASN166 4.9 110.7 1.0 O B:ASP171 4.9 115.8 1.0 N B:ASN164 4.9 107.2 1.0 HB2 B:ASP172 4.9 112.0 1.0 CA B:PHE168 4.9 116.5 1.0 N B:ASP172 4.9 112.0 1.0 C B:ASP171 4.9 115.8 1.0 N B:PHE168 5.0 116.5 1.0 HD22 B:ASN164 5.0 107.2 1.0

Calcium binding site 6 out of 12 in the Vwf Tubules of D1D2D'D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Vwf Tubules of D1D2D'D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1307 b:91.9 occ:1.00 OD1 B:ASN526 2.3 89.0 1.0 O B:ASN530 2.3 88.5 1.0 OD1 B:ASN528 2.4 85.8 1.0 OD2 B:ASP400 2.4 83.9 1.0 OD1 B:ASP533 2.4 88.7 1.0 OD1 B:ASP534 2.6 91.2 1.0 CG B:ASN528 3.4 85.8 1.0 HD21 B:ASN528 3.5 85.8 1.0 CG B:ASN526 3.5 89.0 1.0 CG B:ASP533 3.5 88.7 1.0 CG B:ASP400 3.5 83.9 1.0 C B:ASN530 3.6 88.5 1.0 HA B:GLN531 3.6 83.2 1.0 CG B:ASP534 3.7 91.2 1.0 HD21 B:ASN526 3.7 89.0 1.0 ND2 B:ASN528 3.8 85.8 1.0 O B:ASN526 3.8 89.0 1.0 H B:ASP533 3.9 88.7 1.0 OD2 B:ASP533 4.0 88.7 1.0 H B:ASN528 4.0 85.8 1.0 OD1 B:ASP400 4.0 83.9 1.0 ND2 B:ASN526 4.0 89.0 1.0 HA B:ASP534 4.1 91.2 1.0 H B:ASN530 4.1 88.5 1.0 O B:ASN528 4.2 85.8 1.0 OD2 B:ASP534 4.3 91.2 1.0 O B:ASP533 4.3 88.7 1.0 C B:ASP533 4.3 88.7 1.0 HB3 B:ASN530 4.3 88.5 1.0 CA B:GLN531 4.4 83.2 1.0 N B:GLN531 4.4 83.2 1.0 N B:ASP534 4.5 91.2 1.0 C B:ASN526 4.5 89.0 1.0 N B:ASN530 4.5 88.5 1.0 CA B:ASN530 4.5 88.5 1.0 H B:ASN526 4.6 89.0 1.0 CA B:ASP534 4.6 91.2 1.0 N B:ASN528 4.6 85.8 1.0 CB B:ASP534 4.7 91.2 1.0 HD22 B:ASN528 4.7 85.8 1.0 N B:ASP533 4.7 88.7 1.0 CB B:ASN526 4.7 89.0 1.0 HB2 B:ASP400 4.7 83.9 1.0 C B:ASN528 4.7 85.8 1.0 CB B:ASN528 4.7 85.8 1.0 CB B:ASP400 4.7 83.9 1.0 CB B:ASP533 4.8 88.7 1.0 N B:ASN526 4.8 89.0 1.0 CA B:ASP533 4.8 88.7 1.0 H B:ASP534 4.9 91.2 1.0 HD22 B:ASN526 4.9 89.0 1.0 C B:GLN531 4.9 83.2 1.0 CB B:ASN530 4.9 88.5 1.0 CA B:ASN526 4.9 89.0 1.0 CA B:ASN528 4.9 85.8 1.0 HB2 B:ASP534 5.0 91.2 1.0 HB2 B:ASN526 5.0 89.0 1.0

Calcium binding site 7 out of 12 in the Vwf Tubules of D1D2D'D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Vwf Tubules of D1D2D'D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1305 b:188.1 occ:1.00 HB3 D:ASP172 2.3 188.7 1.0 OD1 D:ASN166 2.4 182.6 1.0 OD1 D:ASN164 2.4 183.8 1.0 O D:PHE168 2.6 185.7 1.0 OD1 D:ASP171 2.7 190.8 1.0 HD21 D:ASN166 2.8 182.6 1.0 CB D:ASP172 3.2 188.7 1.0 CG D:ASN166 3.2 182.6 1.0 ND2 D:ASN166 3.4 182.6 1.0 HA D:ALA169 3.4 188.4 1.0 H D:ASP171 3.4 190.8 1.0 CG D:ASN164 3.5 183.8 1.0 N D:ASP172 3.5 188.7 1.0 HD21 D:ASN164 3.6 183.8 1.0 C D:ASP171 3.6 190.8 1.0 HA D:ASP172 3.6 188.7 1.0 O D:ASP171 3.7 190.8 1.0 CA D:ASP172 3.7 188.7 1.0 O D:ASN164 3.7 183.8 1.0 C D:PHE168 3.7 185.7 1.0 CG D:ASP171 3.8 190.8 1.0 HB2 D:ASP172 3.9 188.7 1.0 CG D:ASP172 3.9 188.7 1.0 H D:ASP172 3.9 188.7 1.0 ND2 D:ASN164 3.9 183.8 1.0 OD1 D:ASP172 4.0 188.7 1.0 HB2 D:ASP47 4.1 182.2 1.0 N D:ASP171 4.1 190.8 1.0 CA D:ALA169 4.1 188.4 1.0 HD22 D:ASN166 4.2 182.6 1.0 OD2 D:ASP47 4.2 182.2 1.0 H D:ASN166 4.3 182.6 1.0 CA D:ASP171 4.3 190.8 1.0 HB3 D:ASP47 4.3 182.2 1.0 N D:ALA169 4.4 188.4 1.0 C D:ALA169 4.4 188.4 1.0 O D:ASN166 4.5 182.6 1.0 HB2 D:PHE168 4.6 185.7 1.0 CB D:ASP47 4.6 182.2 1.0 H D:GLU170 4.6 191.1 1.0 N D:GLU170 4.6 191.1 1.0 C D:ASN164 4.7 183.8 1.0 OD2 D:ASP171 4.7 190.8 1.0 CB D:ASN166 4.7 182.6 1.0 CB D:ASP171 4.7 190.8 1.0 OD2 D:ASP172 4.7 188.7 1.0 H D:ASN164 4.8 183.8 1.0 HD22 D:ASN164 4.8 183.8 1.0 CB D:ASN164 4.8 183.8 1.0 N D:ASN166 4.9 182.6 1.0 O D:ALA169 4.9 188.4 1.0 CG D:ASP47 4.9 182.2 1.0 CA D:PHE168 4.9 185.7 1.0

Calcium binding site 8 out of 12 in the Vwf Tubules of D1D2D'D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Vwf Tubules of D1D2D'D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1306 b:154.2 occ:1.00 H D:ASP1000 2.0 149.6 1.0 OD1 D:ASP1000 2.2 149.6 1.0 OD2 D:ASP1006 2.3 142.7 1.0 OD2 D:ASP879 2.3 144.3 1.0 OD1 D:ASP1006 2.3 142.7 1.0 OD1 D:ASN998 2.6 150.6 1.0 CG D:ASP1006 2.6 142.7 1.0 CG D:ASP1000 2.7 149.6 1.0 N D:ASP1000 2.8 149.6 1.0 O D:ILE1002 2.9 139.6 1.0 H D:ILE1002 2.9 139.6 1.0 H D:GLY1001 3.0 146.1 1.0 OD2 D:ASP1000 3.2 149.6 1.0 CG D:ASP879 3.2 144.3 1.0 H D:PHE999 3.3 148.2 1.0 HA D:PHE999 3.5 148.2 1.0 N D:GLY1001 3.5 146.1 1.0 CA D:ASP1000 3.6 149.6 1.0 N D:PHE999 3.6 148.2 1.0 N D:ILE1002 3.6 139.6 1.0 CB D:ASP1000 3.6 149.6 1.0 C D:PHE999 3.8 148.2 1.0 CG D:ASN998 3.8 150.6 1.0 CA D:PHE999 3.8 148.2 1.0 C D:ILE1002 3.8 139.6 1.0 OD1 D:ASN1005 3.9 141.3 1.0 C D:ASP1000 3.9 149.6 1.0 OD1 D:ASP879 3.9 144.3 1.0 HB2 D:ASP879 4.0 144.3 1.0 HB3 D:ASP1000 4.0 149.6 1.0 H D:ASN998 4.1 150.6 1.0 CB D:ASP1006 4.1 142.7 1.0 HD21 D:ASN998 4.2 150.6 1.0 CB D:ASP879 4.2 144.3 1.0 CA D:ILE1002 4.3 139.6 1.0 HB D:ILE1002 4.3 139.6 1.0 C D:ASN998 4.4 150.6 1.0 C D:GLY1001 4.4 146.1 1.0 CA D:GLY1001 4.4 146.1 1.0 ND2 D:ASN998 4.4 150.6 1.0 HB2 D:ASP1000 4.4 149.6 1.0 HB3 D:ASP1006 4.5 142.7 1.0 HA D:ASP1000 4.5 149.6 1.0 HB3 D:ASP879 4.5 144.3 1.0 HB2 D:ASP1006 4.6 142.7 1.0 N D:ASN998 4.6 150.6 1.0 HD21 D:ASN1005 4.6 141.3 1.0 HA D:GLN1003 4.7 133.3 1.0 HA2 D:GLY1001 4.7 146.1 1.0 HA D:ASP1006 4.8 142.7 1.0 CA D:ASN998 4.9 150.6 1.0 CG D:ASN1005 4.9 141.3 1.0 CB D:ILE1002 4.9 139.6 1.0 HD1 D:PHE999 4.9 148.2 1.0 N D:GLN1003 4.9 133.3 1.0 CA D:ASP1006 4.9 142.7 1.0 O D:ASP1000 4.9 149.6 1.0 CB D:ASN998 4.9 150.6 1.0 O D:PHE999 5.0 148.2 1.0

Calcium binding site 9 out of 12 in the Vwf Tubules of D1D2D'D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Vwf Tubules of D1D2D'D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1307 b:131.6 occ:1.00 O D:ASN530 2.3 128.8 1.0 OD1 D:ASN526 2.3 121.5 1.0 OD1 D:ASN528 2.3 122.6 1.0 OD1 D:ASP534 2.3 124.7 1.0 OD1 D:ASP533 2.4 127.1 1.0 OD2 D:ASP400 2.7 119.9 1.0 HD21 D:ASN528 3.2 122.6 1.0 CG D:ASN528 3.3 122.6 1.0 CG D:ASP534 3.4 124.7 1.0 CG D:ASN526 3.4 121.5 1.0 C D:ASN530 3.5 128.8 1.0 O D:ASN526 3.5 121.5 1.0 CG D:ASP533 3.5 127.1 1.0 HA D:GLN531 3.5 125.5 1.0 ND2 D:ASN528 3.6 122.6 1.0 H D:ASP533 3.8 127.1 1.0 HD21 D:ASN526 3.8 121.5 1.0 CG D:ASP400 3.9 119.9 1.0 OD2 D:ASP534 3.9 124.7 1.0 HA D:ASP534 4.0 124.7 1.0 OD2 D:ASP533 4.0 127.1 1.0 ND2 D:ASN526 4.1 121.5 1.0 H D:ASN530 4.1 128.8 1.0 O D:ASN528 4.1 122.6 1.0 O D:ASP533 4.1 127.1 1.0 C D:ASP533 4.1 127.1 1.0 HB3 D:ASN530 4.2 128.8 1.0 CA D:GLN531 4.3 125.5 1.0 N D:ASP534 4.3 124.7 1.0 C D:ASN526 4.3 121.5 1.0 H D:ASN528 4.3 122.6 1.0 N D:GLN531 4.3 125.5 1.0 OD1 D:ASP400 4.4 119.9 1.0 CA D:ASP534 4.5 124.7 1.0 CA D:ASN530 4.5 128.8 1.0 HD22 D:ASN528 4.5 122.6 1.0 N D:ASN530 4.5 128.8 1.0 H D:ASN526 4.5 121.5 1.0 CB D:ASP534 4.5 124.7 1.0 N D:ASP533 4.6 127.1 1.0 CB D:ASN526 4.6 121.5 1.0 C D:ASN528 4.7 122.6 1.0 CB D:ASN528 4.7 122.6 1.0 N D:ASN528 4.7 122.6 1.0 H D:ASP534 4.7 124.7 1.0 CB D:ASP533 4.7 127.1 1.0 CA D:ASP533 4.7 127.1 1.0 N D:ASN526 4.7 121.5 1.0 HB2 D:ASN526 4.8 121.5 1.0 CA D:ASN526 4.8 121.5 1.0 CB D:ASN530 4.8 128.8 1.0 C D:GLN531 4.8 125.5 1.0 CA D:ASN528 4.9 122.6 1.0 HD22 D:ASN526 4.9 121.5 1.0 HB2 D:ASP400 5.0 119.9 1.0

Calcium binding site 10 out of 12 in the Vwf Tubules of D1D2D'D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Vwf Tubules of D1D2D'D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca1305 b:189.1 occ:1.00 H E:ASP1000 2.0 174.2 1.0 OD2 E:ASP879 2.2 171.4 1.0 OD1 E:ASN998 2.3 172.2 1.0 OD1 E:ASP1006 2.3 174.0 1.0 OD1 E:ASP1000 2.4 174.2 1.0 OD2 E:ASP1006 2.5 174.0 1.0 CG E:ASP1000 2.6 174.2 1.0 CG E:ASP1006 2.7 174.0 1.0 N E:ASP1000 2.8 174.2 1.0 OD2 E:ASP1000 2.8 174.2 1.0 H E:ILE1002 3.1 176.6 1.0 H E:PHE999 3.1 173.1 1.0 H E:GLY1001 3.2 176.9 1.0 O E:ILE1002 3.2 176.6 1.0 CG E:ASN998 3.4 172.2 1.0 CG E:ASP879 3.4 171.4 1.0 N E:PHE999 3.4 173.1 1.0 H E:ASN998 3.4 172.2 1.0 CB E:ASP1000 3.5 174.2 1.0 CA E:ASP1000 3.5 174.2 1.0 N E:GLY1001 3.6 176.9 1.0 HA E:PHE999 3.8 173.1 1.0 OD1 E:ASN1005 3.8 174.0 1.0 C E:PHE999 3.8 173.1 1.0 N E:ILE1002 3.8 176.6 1.0 HB3 E:ASP1000 3.8 174.2 1.0 C E:ASP1000 3.9 174.2 1.0 CA E:PHE999 3.9 173.1 1.0 HD21 E:ASN998 4.0 172.2 1.0 HD21 E:ASN1005 4.0 174.0 1.0 C E:ASN998 4.1 172.2 1.0 ND2 E:ASN998 4.1 172.2 1.0 OD1 E:ASP879 4.1 171.4 1.0 C E:ILE1002 4.2 176.6 1.0 HB E:ILE1002 4.2 176.6 1.0 N E:ASN998 4.2 172.2 1.0 HB2 E:ASP879 4.2 171.4 1.0 CB E:ASP1006 4.2 174.0 1.0 HB2 E:ASP1000 4.3 174.2 1.0 HA E:ASP1000 4.4 174.2 1.0 CA E:ASN998 4.4 172.2 1.0 CB E:ASP879 4.4 171.4 1.0 CB E:ASN998 4.5 172.2 1.0 CA E:ILE1002 4.5 176.6 1.0 CG E:ASN1005 4.5 174.0 1.0 ND2 E:ASN1005 4.6 174.0 1.0 HB3 E:ASP1006 4.6 174.0 1.0 CA E:GLY1001 4.6 176.9 1.0 C E:GLY1001 4.7 176.9 1.0 HA E:ASP1006 4.7 174.0 1.0 HB2 E:ASP1006 4.7 174.0 1.0 HB2 E:ASN998 4.8 172.2 1.0 O E:ASN998 4.8 172.2 1.0 HB3 E:ASP879 4.9 171.4 1.0 CB E:ILE1002 4.9 176.6 1.0 O E:ASP1000 4.9 174.2 1.0 CA E:ASP1006 4.9 174.0 1.0 O E:PHE999 4.9 173.1 1.0 HD22 E:ASN998 4.9 172.2 1.0 HA3 E:GLY997 5.0 168.7 1.0 HA2 E:GLY1001 5.0 176.9 1.0

G.Javitt, D.Fass. Helical Self-Assembly of A Mucin Segment Suggests An Evolutionary Origin For Von Willebrand Factor Tubules. Proc.Natl.Acad.Sci.Usa V. 119 90119 2022.
ISSN: ESSN 1091-6490
PubMed: 35377815
DOI: 10.1073/PNAS.2116790119