Calcium in PDB 7pov: MUC2 Tubules of D1D2D3 Domains

The binding sites of Calcium atom in the MUC2 Tubules of D1D2D3 Domains (pdb code 7pov). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the MUC2 Tubules of D1D2D3 Domains, PDB code: 7pov:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in the MUC2 Tubules of D1D2D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of MUC2 Tubules of D1D2D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2001 b:88.0 occ:1.00 OD1 A:ASN530 2.2 58.1 1.0 O A:LEU534 2.2 61.5 1.0 OD1 A:ASP538 2.3 68.3 1.0 OD1 A:ASN532 2.5 62.1 1.0 OD2 A:ASP403 2.7 58.4 1.0 H A:ASN532 3.1 62.1 1.0 OD1 A:ASP537 3.2 66.6 1.0 CG A:ASN530 3.3 58.1 1.0 H A:PHE531 3.3 63.1 1.0 HD21 A:ASN530 3.4 58.1 1.0 C A:LEU534 3.4 61.5 1.0 CG A:ASP538 3.5 68.3 1.0 H A:LEU534 3.6 61.5 1.0 CG A:ASN532 3.6 62.1 1.0 H A:ASN530 3.7 58.1 1.0 HA A:GLU535 3.7 71.0 1.0 ND2 A:ASN530 3.7 58.1 1.0 HB2 A:ASP403 3.8 58.4 1.0 CG A:ASP403 3.9 58.4 1.0 N A:ASN532 3.9 62.1 1.0 H A:GLY533 3.9 62.5 1.0 N A:PHE531 3.9 63.1 1.0 HD21 A:ASN532 4.0 62.1 1.0 N A:LEU534 4.0 61.5 1.0 HA A:ASP538 4.1 68.3 1.0 OD2 A:ASP538 4.2 68.3 1.0 ND2 A:ASN532 4.2 62.1 1.0 HA A:PHE531 4.2 63.1 1.0 CG A:ASP537 4.3 66.6 1.0 CA A:LEU534 4.3 61.5 1.0 HB3 A:LEU534 4.3 61.5 1.0 CB A:ASP403 4.3 58.4 1.0 N A:GLU535 4.3 71.0 1.0 N A:ASN530 4.4 58.1 1.0 N A:GLY533 4.4 62.5 1.0 CA A:GLU535 4.4 71.0 1.0 CA A:PHE531 4.5 63.1 1.0 H A:ASP538 4.6 68.3 1.0 N A:ASP538 4.6 68.3 1.0 CB A:ASN530 4.6 58.1 1.0 HD22 A:ASN530 4.6 58.1 1.0 CA A:ASP538 4.6 68.3 1.0 HB3 A:ASP403 4.6 58.4 1.0 OD2 A:ASP537 4.6 66.6 1.0 C A:ASN530 4.6 58.1 1.0 CB A:ASP538 4.7 68.3 1.0 CA A:ASN532 4.7 62.1 1.0 CB A:ASN532 4.7 62.1 1.0 H A:ASP537 4.8 66.6 1.0 C A:PHE531 4.8 63.1 1.0 CA A:ASN530 4.8 58.1 1.0 CB A:LEU534 4.9 61.5 1.0 C A:ASN532 4.9 62.1 1.0 OD1 A:ASP403 4.9 58.4 1.0 C A:GLY533 4.9 62.5 1.0 HA3 A:GLY529 5.0 59.5 1.0

Calcium binding site 2 out of 6 in the MUC2 Tubules of D1D2D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of MUC2 Tubules of D1D2D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2002 b:198.1 occ:1.00 OE2 A:GLU180 2.4 174.6 1.0 OD1 A:ASN173 2.4 180.5 1.0 O A:LEU175 2.5 198.0 1.0 HD21 A:ASN173 2.8 180.5 1.0 H A:LEU175 3.0 198.0 1.0 OE1 A:GLU180 3.1 174.6 1.0 OD2 A:ASP49 3.1 153.5 1.0 CD A:GLU180 3.1 174.6 1.0 CB A:LEU175 3.2 198.0 1.0 H A:TYR178 3.2 182.2 1.0 CG A:ASN173 3.2 180.5 1.0 C A:LEU175 3.3 198.0 1.0 ND2 A:ASN173 3.3 180.5 1.0 HB3 A:ASP171 3.5 159.3 1.0 CA A:LEU175 3.5 198.0 1.0 N A:LEU175 3.5 198.0 1.0 H A:SER179 3.6 179.3 1.0 N A:TYR178 4.0 182.2 1.0 CB A:TYR178 4.1 182.2 1.0 H A:SER177 4.1 185.0 1.0 HD22 A:ASN173 4.2 180.5 1.0 H A:ASN173 4.2 180.5 1.0 CG A:ASP49 4.2 153.5 1.0 HB2 A:ASP49 4.3 153.5 1.0 H A:GLU180 4.4 174.6 1.0 N A:SER179 4.4 179.3 1.0 CB A:ASP171 4.4 159.3 1.0 HA A:LEU175 4.4 198.0 1.0 H A:GLY174 4.4 184.9 1.0 N A:GLN176 4.5 185.8 1.0 OG A:SER179 4.5 179.3 1.0 N A:SER177 4.5 185.0 1.0 CG A:GLU180 4.6 174.6 1.0 CA A:TYR178 4.6 182.2 1.0 O A:ASP171 4.6 159.3 1.0 C A:GLY174 4.7 184.9 1.0 CB A:ASN173 4.7 180.5 1.0 N A:GLY174 4.7 184.9 1.0 CB A:ASP49 4.7 153.5 1.0 H A:ASP171 4.8 159.3 1.0 HG A:SER179 4.8 179.3 1.0 HG3 A:GLU180 4.8 174.6 1.0 HA A:SER177 4.8 185.0 1.0 HB3 A:ASP49 4.9 153.5 1.0 HB2 A:ASP171 4.9 159.3 1.0 N A:ASN173 4.9 180.5 1.0 HA A:GLN176 4.9 185.8 1.0 HG2 A:GLU180 5.0 174.6 1.0 C A:ASP171 5.0 159.3 1.0 C A:SER177 5.0 185.0 1.0

Calcium binding site 3 out of 6 in the MUC2 Tubules of D1D2D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of MUC2 Tubules of D1D2D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2001 b:83.1 occ:1.00 O B:LEU534 2.3 74.6 1.0 OD1 B:ASN530 2.3 75.8 1.0 OD1 B:ASP538 2.4 73.3 1.0 OD1 B:ASP537 2.4 74.7 1.0 OD1 B:ASN532 2.8 76.6 1.0 OD2 B:ASP403 3.1 70.3 1.0 HD21 B:ASN530 3.2 75.8 1.0 CG B:ASN530 3.2 75.8 1.0 CG B:ASP538 3.3 73.3 1.0 HA B:ASP538 3.4 73.3 1.0 C B:LEU534 3.5 74.6 1.0 HA B:GLU535 3.5 72.0 1.0 ND2 B:ASN530 3.6 75.8 1.0 H B:ASN532 3.6 76.6 1.0 H B:ASN530 3.6 75.8 1.0 CG B:ASP537 3.6 74.7 1.0 CG B:ASN532 3.8 76.6 1.0 H B:PHE531 3.8 85.4 1.0 N B:ASP538 3.8 73.3 1.0 HD21 B:ASN532 3.9 76.6 1.0 H B:ASP538 3.9 73.3 1.0 H B:ASP537 3.9 74.7 1.0 CA B:ASP538 4.0 73.3 1.0 OD2 B:ASP538 4.0 73.3 1.0 OD2 B:ASP537 4.2 74.7 1.0 ND2 B:ASN532 4.2 76.6 1.0 C B:ASP537 4.2 74.7 1.0 CB B:ASP538 4.2 73.3 1.0 CA B:GLU535 4.3 72.0 1.0 HB3 B:LEU534 4.3 74.6 1.0 CG B:ASP403 4.3 70.3 1.0 H B:LEU534 4.3 74.6 1.0 N B:GLU535 4.3 72.0 1.0 N B:PHE531 4.3 85.4 1.0 N B:ASN530 4.4 75.8 1.0 HB2 B:ASP403 4.4 70.3 1.0 HD22 B:ASN530 4.4 75.8 1.0 N B:ASN532 4.4 76.6 1.0 CA B:LEU534 4.5 74.6 1.0 N B:LEU534 4.6 74.6 1.0 CB B:ASN530 4.6 75.8 1.0 N B:ASP537 4.6 74.7 1.0 O B:ASP537 4.6 74.7 1.0 C B:GLU535 4.7 72.0 1.0 HB2 B:ASP538 4.7 73.3 1.0 CA B:ASP537 4.8 74.7 1.0 CB B:ASP537 4.8 74.7 1.0 HA3 B:GLY529 4.8 74.8 1.0 HA B:PHE531 4.8 85.4 1.0 HG B:LEU534 4.8 74.6 1.0 CA B:ASN530 4.8 75.8 1.0 CB B:LEU534 4.9 74.6 1.0 CB B:ASP403 4.9 70.3 1.0 C B:ASN530 4.9 75.8 1.0 H B:GLY533 4.9 77.8 1.0 HB3 B:ASP538 5.0 73.3 1.0 CB B:ASN532 5.0 76.6 1.0 HB3 B:ASN530 5.0 75.8 1.0

Calcium binding site 4 out of 6 in the MUC2 Tubules of D1D2D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of MUC2 Tubules of D1D2D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2002 b:196.2 occ:1.00 OE2 B:GLU180 2.4 163.4 1.0 OD1 B:ASN173 2.4 168.1 1.0 O B:LEU175 2.4 180.0 1.0 HD21 B:ASN173 2.9 168.1 1.0 H B:LEU175 2.9 180.0 1.0 OD1 B:ASP171 2.9 140.8 1.0 OD2 B:ASP49 2.9 139.4 1.0 CD B:GLU180 3.1 163.4 1.0 OE1 B:GLU180 3.2 163.4 1.0 CG B:ASN173 3.2 168.1 1.0 C B:LEU175 3.2 180.0 1.0 CB B:LEU175 3.2 180.0 1.0 H B:TYR178 3.3 177.0 1.0 ND2 B:ASN173 3.4 168.1 1.0 N B:LEU175 3.4 180.0 1.0 CA B:LEU175 3.5 180.0 1.0 H B:SER179 3.7 169.5 1.0 CG B:ASP171 3.8 140.8 1.0 OD2 B:ASP171 3.9 140.8 1.0 CG B:ASP49 4.1 139.4 1.0 N B:TYR178 4.1 177.0 1.0 H B:ASN173 4.1 168.1 1.0 H B:SER177 4.1 176.9 1.0 HB2 B:ASP49 4.2 139.4 1.0 HD22 B:ASN173 4.2 168.1 1.0 CB B:TYR178 4.2 177.0 1.0 H B:GLY174 4.3 168.9 1.0 H B:GLU180 4.4 163.4 1.0 HA B:LEU175 4.4 180.0 1.0 N B:GLN176 4.4 170.5 1.0 OG B:SER179 4.5 169.5 1.0 N B:SER179 4.5 169.5 1.0 CG B:GLU180 4.5 163.4 1.0 N B:SER177 4.5 176.9 1.0 O B:ASP171 4.5 140.8 1.0 C B:GLY174 4.6 168.9 1.0 CB B:ASP49 4.6 139.4 1.0 HG3 B:GLU180 4.6 163.4 1.0 N B:GLY174 4.6 168.9 1.0 CB B:ASN173 4.7 168.1 1.0 CA B:TYR178 4.7 177.0 1.0 HB3 B:ASP49 4.7 139.4 1.0 HG B:SER179 4.8 169.5 1.0 N B:ASN173 4.8 168.1 1.0 HA B:GLN176 4.9 170.5 1.0 H B:ASP171 4.9 140.8 1.0 HA B:SER177 4.9 176.9 1.0 HG2 B:GLU180 4.9 163.4 1.0

Calcium binding site 5 out of 6 in the MUC2 Tubules of D1D2D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of MUC2 Tubules of D1D2D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1301 b:64.5 occ:1.00 OD1 C:ASP996 2.3 53.2 1.0 OD1 C:ASP1002 2.3 57.7 1.0 OD1 C:ASN994 2.4 56.1 1.0 O C:ARG998 2.4 64.8 1.0 OD2 C:ASP872 2.5 46.8 1.0 OD1 C:ASN1001 2.8 55.7 1.0 CG C:ASP996 3.2 53.2 1.0 H C:ASP996 3.2 53.2 1.0 CG C:ASP1002 3.4 57.7 1.0 CG C:ASN994 3.5 56.1 1.0 H C:ARG998 3.5 64.8 1.0 H C:ASN994 3.5 56.1 1.0 C C:ARG998 3.6 64.8 1.0 OD2 C:ASP996 3.6 53.2 1.0 CG C:ASP872 3.7 46.8 1.0 H C:PHE995 3.8 56.5 1.0 HA C:SER999 3.8 49.7 1.0 HD21 C:ASN994 3.8 56.1 1.0 HB3 C:ARG998 3.9 64.8 1.0 CG C:ASN1001 4.0 55.7 1.0 OD2 C:ASP1002 4.0 57.7 1.0 N C:ASP996 4.0 53.2 1.0 ND2 C:ASN994 4.1 56.1 1.0 N C:PHE995 4.1 56.5 1.0 HA C:ASP1002 4.1 57.7 1.0 HD21 C:ASN1001 4.2 55.7 1.0 N C:ARG998 4.2 64.8 1.0 HB2 C:ASP872 4.3 46.8 1.0 H C:ASN1001 4.3 55.7 1.0 N C:ASN994 4.3 56.1 1.0 CA C:ARG998 4.4 64.8 1.0 CB C:ASP996 4.4 53.2 1.0 N C:ASP1002 4.5 57.7 1.0 N C:SER999 4.5 49.7 1.0 C C:ASN994 4.5 56.1 1.0 ND2 C:ASN1001 4.5 55.7 1.0 C C:ASN1001 4.5 55.7 1.0 OD1 C:ASP872 4.6 46.8 1.0 CB C:ASP872 4.6 46.8 1.0 O C:ASN1001 4.6 55.7 1.0 CA C:SER999 4.6 49.7 1.0 CB C:ASP1002 4.6 57.7 1.0 CA C:ASP1002 4.6 57.7 1.0 CB C:ARG998 4.6 64.8 1.0 CA C:ASP996 4.6 53.2 1.0 HB3 C:ASP996 4.7 53.2 1.0 O C:HOH1407 4.7 64.6 1.0 HA C:PHE995 4.7 56.5 1.0 CB C:ASN994 4.7 56.1 1.0 CA C:ASN994 4.7 56.1 1.0 H C:ASP1002 4.8 57.7 1.0 CA C:PHE995 4.8 56.5 1.0 H C:HIS997 4.8 52.4 0.5 H C:HIS997 4.8 52.4 0.5 HB3 C:ASP872 4.9 46.8 1.0 C C:PHE995 4.9 56.5 1.0 C C:ASP996 4.9 53.2 1.0 HA3 C:GLY993 5.0 110.5 1.0 HD22 C:ASN994 5.0 56.1 1.0 N C:HIS997 5.0 52.4 1.0

Calcium binding site 6 out of 6 in the MUC2 Tubules of D1D2D3 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of MUC2 Tubules of D1D2D3 Domains within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca2001 b:87.0 occ:1.00 OD1 D:ASP996 2.2 60.2 1.0 OD1 D:ASN1001 2.2 73.8 1.0 OD1 D:ASP1002 2.2 59.7 1.0 OD1 D:ASN994 2.3 49.6 1.0 O D:ARG998 2.4 78.9 1.0 OD2 D:ASP996 2.7 60.2 1.0 CG D:ASP996 2.7 60.2 1.0 OD2 D:ASP872 2.9 58.5 1.0 CG D:ASN1001 3.3 73.8 1.0 CG D:ASN994 3.3 49.6 1.0 HD21 D:ASN994 3.4 49.6 1.0 CG D:ASP1002 3.4 59.7 1.0 HD21 D:ASN1001 3.4 73.8 1.0 C D:ARG998 3.6 78.9 1.0 H D:ASN994 3.7 49.6 1.0 ND2 D:ASN994 3.7 49.6 1.0 ND2 D:ASN1001 3.8 73.8 1.0 H D:ASP996 3.8 60.2 1.0 HB3 D:ARG998 3.8 78.9 1.0 H D:ARG998 3.8 78.9 1.0 HA D:ASP1002 3.8 59.7 1.0 HA D:SER999 4.0 60.2 1.0 H D:ASN1001 4.0 73.8 1.0 N D:ASP1002 4.1 59.7 1.0 OD2 D:ASP1002 4.1 59.7 1.0 CB D:ASP996 4.1 60.2 1.0 CG D:ASP872 4.1 58.5 1.0 H D:ASP1002 4.1 59.7 1.0 CA D:ASP1002 4.3 59.7 1.0 C D:ASN1001 4.3 73.8 1.0 CA D:ARG998 4.4 78.9 1.0 N D:ARG998 4.4 78.9 1.0 N D:ASP996 4.4 60.2 1.0 HB3 D:ASP996 4.4 60.2 1.0 CB D:ASP1002 4.4 59.7 1.0 H D:PHE995 4.5 61.1 1.0 N D:ASN994 4.5 49.6 1.0 CB D:ARG998 4.5 78.9 1.0 N D:SER999 4.6 60.2 1.0 CB D:ASN1001 4.6 73.8 1.0 HD22 D:ASN994 4.6 49.6 1.0 HD22 D:ASN1001 4.6 73.8 1.0 CB D:ASN994 4.7 49.6 1.0 HB2 D:ASP872 4.7 58.5 1.0 N D:PHE995 4.7 61.1 1.0 CA D:SER999 4.7 60.2 1.0 HG2 D:ARG998 4.7 78.9 1.0 N D:ASN1001 4.7 73.8 1.0 CA D:ASP996 4.7 60.2 1.0 HB2 D:ASP996 4.7 60.2 1.0 O D:ASN1001 4.8 73.8 1.0 CA D:ASN1001 4.8 73.8 1.0 C D:ASN994 4.8 49.6 1.0 CA D:ASN994 4.9 49.6 1.0 CB D:ASP872 4.9 58.5 1.0 OD1 D:ASP872 5.0 58.5 1.0

G.Javitt, D.Fass. Helical Self-Assembly of A Mucin Segment Suggests An Evolutionary Origin For Von Willebrand Factor Tubules. Proc.Natl.Acad.Sci.Usa V. 119 90119 2022.
ISSN: ESSN 1091-6490
PubMed: 35377815
DOI: 10.1073/PNAS.2116790119