Calcium in PDB 7ptr: Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea

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>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Calcium atom in the Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea (pdb code 7ptr). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 18 binding sites of Calcium where determined in the Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea, PDB code: 7ptr:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 18 in the Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca901 b:99.2 occ:1.00 OD2 A:ASP108 2.3 93.1 1.0 OD1 A:ASP108 2.4 93.1 1.0 OD2 A:ASP106 2.4 84.3 1.0 O A:GLY109 2.5 90.0 1.0 O A:ALA113 2.5 99.0 1.0 O A:GLY111 2.5 96.0 1.0 CG A:ASP108 2.6 93.1 1.0 CG A:ASP106 3.3 84.3 1.0 CB A:ASP106 3.5 84.3 1.0 C A:GLY109 3.5 90.0 1.0 C A:GLY111 3.6 96.0 1.0 C A:ALA113 3.7 99.0 1.0 N A:GLY109 3.9 90.0 1.0 CB A:ASP108 4.0 93.1 1.0 N A:GLY111 4.0 96.0 1.0 C A:ASP108 4.1 93.1 1.0 CA A:GLY109 4.2 90.0 1.0 CA A:GLY111 4.3 96.0 1.0 CG2 A:THR78 4.3 78.5 1.0 N A:ALA113 4.3 99.0 1.0 C A:SER110 4.4 88.7 1.0 C A:SER112 4.5 101.4 1.0 OD1 A:ASP106 4.5 84.3 1.0 CA A:ASP108 4.5 93.1 1.0 N A:SER110 4.6 88.7 1.0 CA A:ALA113 4.6 99.0 1.0 O A:ASP108 4.6 93.1 1.0 N A:THR114 4.6 94.7 1.0 N A:SER112 4.7 101.4 1.0 N A:ASP108 4.7 93.1 1.0 CA A:THR114 4.7 94.7 1.0 O A:SER112 4.8 101.4 1.0 CA A:SER110 4.8 88.7 1.0 OG1 A:THR78 4.8 78.5 1.0 O A:SER110 4.9 88.7 1.0 CA A:SER112 4.9 101.4 1.0

Calcium binding site 2 out of 18 in the Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca902 b:195.4 occ:1.00 O A:ALA591 2.3 188.1 1.0 OD1 A:ASP643 2.3 184.6 1.0 OD2 A:ASP589 2.3 186.0 1.0 OD1 A:ASP642 2.4 189.1 1.0 OG A:SER641 2.4 194.4 1.0 OD1 A:ASP589 2.4 186.0 1.0 OD2 A:ASP643 2.4 184.6 1.0 CG A:ASP643 2.6 184.6 1.0 CG A:ASP589 2.7 186.0 1.0 C A:ALA591 3.5 188.1 1.0 CG A:ASP642 3.6 189.1 1.0 N A:ASP643 3.7 184.6 1.0 O A:GLY593 3.8 198.9 1.0 CB A:SER641 3.8 194.4 1.0 N A:ASP642 3.8 189.1 1.0 CB A:ASP643 3.9 184.6 1.0 N A:GLY593 4.1 198.9 1.0 CB A:ASP589 4.2 186.0 1.0 N A:ALA591 4.2 188.1 1.0 OD2 A:ASP642 4.3 189.1 1.0 N A:GLY587 4.3 175.7 1.0 CA A:ASP643 4.3 184.6 1.0 CA A:ALA591 4.4 188.1 1.0 C A:ASP642 4.4 189.1 1.0 N A:ILE592 4.4 195.0 1.0 CA A:ILE592 4.5 195.0 1.0 CA A:ASP642 4.5 189.1 1.0 C A:ILE592 4.5 195.0 1.0 CA A:SER641 4.5 194.4 1.0 C A:SER641 4.6 194.4 1.0 CB A:ASP642 4.7 189.1 1.0 C A:GLY593 4.7 198.9 1.0 CA A:GLY593 4.8 198.9 1.0 CA A:GLY587 4.8 175.7 1.0 CB A:ALA591 4.9 188.1 1.0 N A:SER590 5.0 180.9 1.0 N A:ASP589 5.0 186.0 1.0

Calcium binding site 3 out of 18 in the Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca903 b:206.7 occ:1.00 OD1 A:ASP594 2.3 205.1 1.0 OE2 A:GLU638 2.3 204.3 1.0 OE1 A:GLU638 2.4 204.3 1.0 O A:SER596 2.4 208.3 1.0 OE2 A:GLU634 2.4 199.2 1.0 OD2 A:ASP594 2.4 205.1 1.0 CD A:GLU638 2.6 204.3 1.0 CG A:ASP594 2.6 205.1 1.0 C A:SER596 3.3 208.3 1.0 CD A:GLU634 3.5 199.2 1.0 CA A:LEU597 3.9 207.1 1.0 N A:LEU597 4.0 207.1 1.0 CG A:GLU638 4.0 204.3 1.0 CB A:ASP594 4.0 205.1 1.0 CG A:GLU634 4.1 199.2 1.0 CD A:PRO598 4.2 210.4 1.0 CA A:SER596 4.3 208.3 1.0 N A:SER596 4.3 208.3 1.0 C A:LEU597 4.4 207.1 1.0 N A:PRO598 4.5 210.4 1.0 OE1 A:GLU634 4.6 199.2 1.0 N A:ASP594 4.6 205.1 1.0 CB A:SER596 4.7 208.3 1.0 CD2 A:LEU597 4.8 207.1 1.0 CA A:ASP594 4.9 205.1 1.0 CB A:GLU638 4.9 204.3 1.0 O A:GLU634 5.0 199.2 1.0

Calcium binding site 4 out of 18 in the Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca901 b:100.2 occ:1.00 OD2 B:ASP108 2.3 91.3 1.0 OD1 B:ASP108 2.4 91.3 1.0 OD2 B:ASP106 2.4 83.2 1.0 O B:GLY109 2.5 87.4 1.0 O B:ALA113 2.5 99.7 1.0 O B:GLY111 2.5 94.5 1.0 CG B:ASP108 2.6 91.3 1.0 CG B:ASP106 3.3 83.2 1.0 CB B:ASP106 3.5 83.2 1.0 C B:GLY109 3.5 87.4 1.0 C B:GLY111 3.6 94.5 1.0 C B:ALA113 3.7 99.7 1.0 N B:GLY109 3.9 87.4 1.0 CB B:ASP108 4.0 91.3 1.0 N B:GLY111 4.0 94.5 1.0 C B:ASP108 4.1 91.3 1.0 CA B:GLY109 4.2 87.4 1.0 CA B:GLY111 4.3 94.5 1.0 CG2 B:THR78 4.3 77.5 1.0 N B:ALA113 4.3 99.7 1.0 C B:SER110 4.4 85.8 1.0 C B:SER112 4.5 101.0 1.0 OD1 B:ASP106 4.5 83.2 1.0 CA B:ASP108 4.5 91.3 1.0 N B:SER110 4.6 85.8 1.0 CA B:ALA113 4.6 99.7 1.0 O B:ASP108 4.6 91.3 1.0 N B:THR114 4.6 95.6 1.0 N B:SER112 4.7 101.0 1.0 N B:ASP108 4.7 91.3 1.0 CA B:THR114 4.7 95.6 1.0 O B:SER112 4.8 101.0 1.0 CA B:SER110 4.8 85.8 1.0 OG1 B:THR78 4.8 77.5 1.0 O B:SER110 4.9 85.8 1.0 CA B:SER112 4.9 101.0 1.0

Calcium binding site 5 out of 18 in the Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca902 b:185.8 occ:1.00 O B:ALA591 2.3 178.2 1.0 OD1 B:ASP643 2.3 174.8 1.0 OD2 B:ASP589 2.3 174.7 1.0 OD1 B:ASP642 2.4 179.4 1.0 OG B:SER641 2.4 187.0 1.0 OD1 B:ASP589 2.4 174.7 1.0 OD2 B:ASP643 2.4 174.8 1.0 CG B:ASP643 2.6 174.8 1.0 CG B:ASP589 2.7 174.7 1.0 C B:ALA591 3.5 178.2 1.0 CG B:ASP642 3.6 179.4 1.0 N B:ASP643 3.7 174.8 1.0 O B:GLY593 3.8 190.0 1.0 CB B:SER641 3.8 187.0 1.0 N B:ASP642 3.8 179.4 1.0 CB B:ASP643 3.9 174.8 1.0 N B:GLY593 4.1 190.0 1.0 CB B:ASP589 4.2 174.7 1.0 N B:ALA591 4.2 178.2 1.0 OD2 B:ASP642 4.3 179.4 1.0 N B:GLY587 4.3 166.0 1.0 CA B:ASP643 4.3 174.8 1.0 CA B:ALA591 4.4 178.2 1.0 C B:ASP642 4.4 179.4 1.0 N B:ILE592 4.4 185.6 1.0 CA B:ILE592 4.5 185.6 1.0 CA B:ASP642 4.5 179.4 1.0 C B:ILE592 4.5 185.6 1.0 CA B:SER641 4.5 187.0 1.0 C B:SER641 4.6 187.0 1.0 CB B:ASP642 4.7 179.4 1.0 C B:GLY593 4.7 190.0 1.0 CA B:GLY593 4.8 190.0 1.0 CA B:GLY587 4.8 166.0 1.0 CB B:ALA591 4.9 178.2 1.0 N B:SER590 5.0 170.9 1.0 N B:ASP589 5.0 174.7 1.0

Calcium binding site 6 out of 18 in the Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca903 b:202.0 occ:1.00 OD1 B:ASP594 2.3 197.0 1.0 OE2 B:GLU638 2.3 200.2 1.0 OE1 B:GLU638 2.4 200.2 1.0 O B:SER596 2.4 200.0 1.0 OE2 B:GLU634 2.4 194.2 1.0 OD2 B:ASP594 2.4 197.0 1.0 CD B:GLU638 2.6 200.2 1.0 CG B:ASP594 2.6 197.0 1.0 C B:SER596 3.3 200.0 1.0 CD B:GLU634 3.5 194.2 1.0 CA B:LEU597 3.9 196.4 1.0 N B:LEU597 4.0 196.4 1.0 CG B:GLU638 4.0 200.2 1.0 CB B:ASP594 4.0 197.0 1.0 CG B:GLU634 4.1 194.2 1.0 CD B:PRO598 4.2 198.4 1.0 CA B:SER596 4.3 200.0 1.0 N B:SER596 4.3 200.0 1.0 C B:LEU597 4.4 196.4 1.0 N B:PRO598 4.5 198.4 1.0 OE1 B:GLU634 4.6 194.2 1.0 N B:ASP594 4.6 197.0 1.0 CB B:SER596 4.7 200.0 1.0 CD2 B:LEU597 4.8 196.4 1.0 CA B:ASP594 4.9 197.0 1.0 CB B:GLU638 4.9 200.2 1.0 O B:GLU634 5.0 194.2 1.0

Calcium binding site 7 out of 18 in the Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca901 b:102.1 occ:1.00 OD2 C:ASP108 2.3 93.2 1.0 OD1 C:ASP108 2.4 93.2 1.0 OD2 C:ASP106 2.4 84.7 1.0 O C:GLY109 2.5 89.2 1.0 O C:ALA113 2.5 101.0 1.0 O C:GLY111 2.5 96.5 1.0 CG C:ASP108 2.6 93.2 1.0 CG C:ASP106 3.3 84.7 1.0 CB C:ASP106 3.5 84.7 1.0 C C:GLY109 3.5 89.2 1.0 C C:GLY111 3.6 96.5 1.0 C C:ALA113 3.7 101.0 1.0 N C:GLY109 3.9 89.2 1.0 CB C:ASP108 4.0 93.2 1.0 N C:GLY111 4.0 96.5 1.0 C C:ASP108 4.1 93.2 1.0 CA C:GLY109 4.2 89.2 1.0 CA C:GLY111 4.3 96.5 1.0 CG2 C:THR78 4.3 78.7 1.0 N C:ALA113 4.3 101.0 1.0 C C:SER110 4.4 87.8 1.0 C C:SER112 4.5 102.9 1.0 OD1 C:ASP106 4.5 84.7 1.0 CA C:ASP108 4.5 93.2 1.0 N C:SER110 4.6 87.8 1.0 CA C:ALA113 4.6 101.0 1.0 O C:ASP108 4.6 93.2 1.0 N C:THR114 4.6 94.7 1.0 N C:SER112 4.7 102.9 1.0 N C:ASP108 4.7 93.2 1.0 CA C:THR114 4.7 94.7 1.0 O C:SER112 4.8 102.9 1.0 CA C:SER110 4.8 87.8 1.0 OG1 C:THR78 4.8 78.7 1.0 O C:SER110 4.9 87.8 1.0 CA C:SER112 4.9 102.9 1.0

Calcium binding site 8 out of 18 in the Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca902 b:195.2 occ:1.00 O C:ALA591 2.3 185.2 1.0 OD1 C:ASP643 2.3 181.2 1.0 OD2 C:ASP589 2.3 184.2 1.0 OD1 C:ASP642 2.4 186.2 1.0 OG C:SER641 2.4 189.4 1.0 OD1 C:ASP589 2.4 184.2 1.0 OD2 C:ASP643 2.4 181.2 1.0 CG C:ASP643 2.6 181.2 1.0 CG C:ASP589 2.7 184.2 1.0 C C:ALA591 3.5 185.2 1.0 CG C:ASP642 3.6 186.2 1.0 N C:ASP643 3.7 181.2 1.0 O C:GLY593 3.8 194.1 1.0 CB C:SER641 3.8 189.4 1.0 N C:ASP642 3.8 186.2 1.0 CB C:ASP643 3.9 181.2 1.0 N C:GLY593 4.1 194.1 1.0 CB C:ASP589 4.2 184.2 1.0 N C:ALA591 4.2 185.2 1.0 OD2 C:ASP642 4.3 186.2 1.0 N C:GLY587 4.3 174.1 1.0 CA C:ASP643 4.3 181.2 1.0 CA C:ALA591 4.4 185.2 1.0 C C:ASP642 4.4 186.2 1.0 N C:ILE592 4.4 189.6 1.0 CA C:ILE592 4.5 189.6 1.0 CA C:ASP642 4.5 186.2 1.0 C C:ILE592 4.5 189.6 1.0 CA C:SER641 4.5 189.4 1.0 C C:SER641 4.6 189.4 1.0 CB C:ASP642 4.7 186.2 1.0 C C:GLY593 4.7 194.1 1.0 CA C:GLY593 4.8 194.1 1.0 CA C:GLY587 4.8 174.1 1.0 CB C:ALA591 4.9 185.2 1.0 N C:SER590 5.0 177.4 1.0 N C:ASP589 5.0 184.2 1.0

Calcium binding site 9 out of 18 in the Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca903 b:204.7 occ:1.00 OD1 C:ASP594 2.3 201.4 1.0 OE2 C:GLU638 2.3 200.0 1.0 OE1 C:GLU638 2.4 200.0 1.0 O C:SER596 2.4 204.0 1.0 OE2 C:GLU634 2.4 193.1 1.0 OD2 C:ASP594 2.4 201.4 1.0 CD C:GLU638 2.6 200.0 1.0 CG C:ASP594 2.6 201.4 1.0 C C:SER596 3.3 204.0 1.0 CD C:GLU634 3.5 193.1 1.0 CA C:LEU597 3.9 202.6 1.0 N C:LEU597 4.0 202.6 1.0 CG C:GLU638 4.0 200.0 1.0 CB C:ASP594 4.0 201.4 1.0 CG C:GLU634 4.1 193.1 1.0 CD C:PRO598 4.2 206.1 1.0 CA C:SER596 4.3 204.0 1.0 N C:SER596 4.3 204.0 1.0 C C:LEU597 4.4 202.6 1.0 N C:PRO598 4.5 206.1 1.0 OE1 C:GLU634 4.6 193.1 1.0 N C:ASP594 4.6 201.4 1.0 CB C:SER596 4.7 204.0 1.0 CD2 C:LEU597 4.8 202.6 1.0 CA C:ASP594 4.9 201.4 1.0 CB C:GLU638 4.9 200.0 1.0 O C:GLU634 5.0 193.1 1.0

Calcium binding site 10 out of 18 in the Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of Hexameric S-Layer Protein From Haloferax Volcanii Archaea within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca901 b:99.1 occ:1.00 OD2 D:ASP108 2.3 92.8 1.0 OD1 D:ASP108 2.4 92.8 1.0 OD2 D:ASP106 2.4 84.3 1.0 O D:GLY109 2.5 89.9 1.0 O D:ALA113 2.5 98.7 1.0 O D:GLY111 2.5 95.6 1.0 CG D:ASP108 2.6 92.8 1.0 CG D:ASP106 3.3 84.3 1.0 CB D:ASP106 3.5 84.3 1.0 C D:GLY109 3.5 89.9 1.0 C D:GLY111 3.6 95.6 1.0 C D:ALA113 3.7 98.7 1.0 N D:GLY109 3.9 89.9 1.0 CB D:ASP108 4.0 92.8 1.0 N D:GLY111 4.0 95.6 1.0 C D:ASP108 4.1 92.8 1.0 CA D:GLY109 4.2 89.9 1.0 CA D:GLY111 4.3 95.6 1.0 CG2 D:THR78 4.3 78.7 1.0 N D:ALA113 4.3 98.7 1.0 C D:SER110 4.4 88.6 1.0 C D:SER112 4.5 101.0 1.0 OD1 D:ASP106 4.5 84.3 1.0 CA D:ASP108 4.5 92.8 1.0 N D:SER110 4.6 88.6 1.0 CA D:ALA113 4.6 98.7 1.0 O D:ASP108 4.6 92.8 1.0 N D:THR114 4.6 94.5 1.0 N D:SER112 4.7 101.0 1.0 N D:ASP108 4.7 92.8 1.0 CA D:THR114 4.7 94.5 1.0 O D:SER112 4.8 101.0 1.0 CA D:SER110 4.8 88.6 1.0 OG1 D:THR78 4.8 78.7 1.0 O D:SER110 4.9 88.6 1.0 CA D:SER112 4.9 101.0 1.0

A.Von Kugelgen, V.Alva, T.A.M.Bharat. Complete Atomic Structure of A Native Archaeal Cell Surface. Cell Rep V. 37 10052 2021.
ISSN: ESSN 2211-1247
PubMed: 34818541
DOI: 10.1016/J.CELREP.2021.110052