Calcium in PDB 7qhm: Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Enzymatic activity of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
All present enzymatic activity of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound):
7.1.1.8;
7.1.1.9;
Other elements in 7qhm:
The structure of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
(pdb code 7qhm). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound), PDB code: 7qhm:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 7qhm
Go back to
Calcium Binding Sites List in 7qhm
Calcium binding site 1 out
of 2 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca605
b:33.9
occ:1.00
|
OE1
|
D:GLU66
|
2.2
|
35.8
|
1.0
|
O
|
D:GLY71
|
2.3
|
42.2
|
1.0
|
O
|
D:THR69
|
2.3
|
40.7
|
1.0
|
O
|
D:HOH702
|
2.4
|
30.2
|
1.0
|
OE1
|
D:GLN73
|
2.4
|
44.1
|
1.0
|
O
|
D:GLU66
|
2.4
|
35.8
|
1.0
|
O
|
D:HOH703
|
2.4
|
33.0
|
1.0
|
H
|
D:GLN73
|
3.2
|
44.1
|
1.0
|
CD
|
D:GLN73
|
3.2
|
44.1
|
1.0
|
HG1
|
D:THR69
|
3.2
|
40.7
|
1.0
|
C
|
D:GLY71
|
3.3
|
42.2
|
1.0
|
H
|
D:THR69
|
3.4
|
40.7
|
1.0
|
CD
|
D:GLU66
|
3.4
|
35.8
|
1.0
|
C
|
D:THR69
|
3.5
|
40.7
|
1.0
|
C
|
D:GLU66
|
3.5
|
35.8
|
1.0
|
HB2
|
D:GLN73
|
3.6
|
44.1
|
1.0
|
HA
|
D:GLU66
|
3.6
|
35.8
|
1.0
|
HA
|
D:LEU72
|
3.8
|
40.7
|
1.0
|
HG3
|
D:GLU66
|
3.8
|
35.8
|
1.0
|
HE22
|
D:GLN73
|
3.9
|
44.1
|
1.0
|
N
|
D:GLN73
|
3.9
|
44.1
|
1.0
|
NE2
|
D:GLN73
|
3.9
|
44.1
|
1.0
|
OG1
|
D:THR69
|
3.9
|
40.7
|
1.0
|
N
|
D:GLY71
|
4.0
|
42.2
|
1.0
|
C
|
D:PRO70
|
4.1
|
41.7
|
1.0
|
CA
|
D:GLU66
|
4.1
|
35.8
|
1.0
|
CG
|
D:GLN73
|
4.1
|
44.1
|
1.0
|
CA
|
D:GLY71
|
4.1
|
42.2
|
1.0
|
N
|
D:THR69
|
4.1
|
40.7
|
1.0
|
CG
|
D:GLU66
|
4.1
|
35.8
|
1.0
|
HG2
|
D:GLN73
|
4.2
|
44.1
|
1.0
|
N
|
D:LEU72
|
4.2
|
40.7
|
1.0
|
HA
|
D:PRO70
|
4.2
|
41.7
|
1.0
|
H
|
D:GLY71
|
4.2
|
42.2
|
1.0
|
CB
|
D:GLN73
|
4.2
|
44.1
|
1.0
|
CA
|
D:THR69
|
4.3
|
40.7
|
1.0
|
HA
|
D:LEU67
|
4.3
|
33.3
|
1.0
|
HA3
|
D:GLY71
|
4.4
|
42.2
|
1.0
|
CA
|
D:LEU72
|
4.4
|
40.7
|
1.0
|
OE2
|
D:GLU66
|
4.4
|
35.8
|
1.0
|
N
|
D:PRO70
|
4.4
|
41.7
|
1.0
|
O
|
D:PRO70
|
4.4
|
41.7
|
1.0
|
CA
|
D:PRO70
|
4.5
|
41.7
|
1.0
|
N
|
D:LEU67
|
4.6
|
33.3
|
1.0
|
HE21
|
D:GLN73
|
4.6
|
44.1
|
1.0
|
C
|
D:LEU72
|
4.7
|
40.7
|
1.0
|
H
|
D:PHE68
|
4.7
|
38.3
|
1.0
|
CA
|
D:GLN73
|
4.7
|
44.1
|
1.0
|
CB
|
D:THR69
|
4.7
|
40.7
|
1.0
|
CB
|
D:GLU66
|
4.7
|
35.8
|
1.0
|
HD23
|
D:LEU72
|
4.7
|
40.7
|
1.0
|
CA
|
D:LEU67
|
4.8
|
33.3
|
1.0
|
N
|
D:PHE68
|
4.9
|
38.3
|
1.0
|
O
|
D:ALA65
|
4.9
|
34.4
|
1.0
|
C
|
D:LEU67
|
4.9
|
33.3
|
1.0
|
H
|
D:LEU72
|
5.0
|
40.7
|
1.0
|
HA2
|
D:GLY71
|
5.0
|
42.2
|
1.0
|
HG3
|
D:GLN73
|
5.0
|
44.1
|
1.0
|
HG2
|
D:GLU66
|
5.0
|
35.8
|
1.0
|
|
Calcium binding site 2 out
of 2 in 7qhm
Go back to
Calcium Binding Sites List in 7qhm
Calcium binding site 2 out
of 2 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Ca604
b:14.4
occ:1.00
|
OE1
|
Q:GLU66
|
2.2
|
18.7
|
1.0
|
O
|
Q:GLY71
|
2.2
|
21.1
|
1.0
|
O
|
Q:THR69
|
2.3
|
21.2
|
1.0
|
O
|
Q:GLU66
|
2.4
|
18.7
|
1.0
|
OE1
|
Q:GLN73
|
2.4
|
21.4
|
1.0
|
O
|
Q:HOH731
|
2.4
|
21.8
|
1.0
|
O
|
Q:HOH735
|
2.4
|
13.7
|
1.0
|
H
|
Q:THR69
|
3.0
|
21.2
|
1.0
|
HG1
|
Q:THR69
|
3.3
|
21.2
|
1.0
|
C
|
Q:THR69
|
3.4
|
21.2
|
1.0
|
CD
|
Q:GLU66
|
3.4
|
18.7
|
1.0
|
C
|
Q:GLY71
|
3.5
|
21.1
|
1.0
|
C
|
Q:GLU66
|
3.5
|
18.7
|
1.0
|
H
|
Q:GLN73
|
3.5
|
21.4
|
1.0
|
CD
|
Q:GLN73
|
3.6
|
21.4
|
1.0
|
HA
|
Q:LEU72
|
3.7
|
19.8
|
1.0
|
HA
|
Q:GLU66
|
3.7
|
18.7
|
1.0
|
N
|
Q:THR69
|
3.8
|
21.2
|
1.0
|
HB2
|
Q:GLN73
|
3.8
|
21.4
|
1.0
|
HG3
|
Q:GLU66
|
3.9
|
18.7
|
1.0
|
OG1
|
Q:THR69
|
3.9
|
21.2
|
1.0
|
CA
|
Q:THR69
|
4.1
|
21.2
|
1.0
|
H
|
Q:PHE68
|
4.1
|
21.2
|
1.0
|
N
|
Q:GLY71
|
4.1
|
21.1
|
1.0
|
CA
|
Q:GLU66
|
4.2
|
18.7
|
1.0
|
C
|
Q:PRO70
|
4.2
|
21.1
|
1.0
|
CG
|
Q:GLU66
|
4.2
|
18.7
|
1.0
|
N
|
Q:GLN73
|
4.2
|
21.4
|
1.0
|
HA
|
Q:LEU67
|
4.2
|
19.6
|
1.0
|
HE22
|
Q:GLN73
|
4.3
|
21.4
|
1.0
|
H
|
Q:GLY71
|
4.3
|
21.1
|
1.0
|
N
|
Q:LEU72
|
4.4
|
19.8
|
1.0
|
OE2
|
Q:GLU66
|
4.4
|
18.7
|
1.0
|
CA
|
Q:LEU72
|
4.4
|
19.8
|
1.0
|
O
|
Q:PRO70
|
4.4
|
21.1
|
1.0
|
CA
|
Q:GLY71
|
4.4
|
21.1
|
1.0
|
NE2
|
Q:GLN73
|
4.4
|
21.4
|
1.0
|
N
|
Q:PRO70
|
4.4
|
21.1
|
1.0
|
N
|
Q:PHE68
|
4.4
|
21.2
|
1.0
|
N
|
Q:LEU67
|
4.5
|
19.6
|
1.0
|
CB
|
Q:GLN73
|
4.5
|
21.4
|
1.0
|
CG
|
Q:GLN73
|
4.5
|
21.4
|
1.0
|
HD23
|
Q:LEU72
|
4.6
|
19.8
|
1.0
|
CB
|
Q:THR69
|
4.6
|
21.2
|
1.0
|
CA
|
Q:LEU67
|
4.7
|
19.6
|
1.0
|
C
|
Q:LEU67
|
4.7
|
19.6
|
1.0
|
HG2
|
Q:GLN73
|
4.7
|
21.4
|
1.0
|
CA
|
Q:PRO70
|
4.7
|
21.1
|
1.0
|
C
|
Q:LEU72
|
4.8
|
19.8
|
1.0
|
CB
|
Q:GLU66
|
4.8
|
18.7
|
1.0
|
OD1
|
Q:ASP464
|
4.8
|
19.1
|
1.0
|
O
|
Q:ALA65
|
4.9
|
20.2
|
1.0
|
HB
|
Q:THR69
|
4.9
|
21.2
|
1.0
|
HA
|
Q:PRO70
|
4.9
|
21.1
|
1.0
|
C
|
Q:PHE68
|
4.9
|
21.2
|
1.0
|
HA
|
Q:THR69
|
5.0
|
21.2
|
1.0
|
HA3
|
Q:GLY71
|
5.0
|
21.1
|
1.0
|
|
Reference:
W.C.Kao,
C.Ortmann De Percin Northumberland,
T.C.Cheng,
J.Ortiz,
A.Durand,
O.Von Loeffelholz,
O.Schilling,
M.L.Biniossek,
B.P.Klaholz,
C.Hunte.
Structural Basis For Safe and Efficient Energy Conversion in A Respiratory Supercomplex. Nat Commun V. 13 545 2022.
ISSN: ESSN 2041-1723
PubMed: 35087070
DOI: 10.1038/S41467-022-28179-X
Page generated: Fri Jul 19 03:29:08 2024
|