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Calcium in PDB 7qho: Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)

Enzymatic activity of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)

All present enzymatic activity of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated):
7.1.1.8; 7.1.1.9;

Other elements in 7qho:

The structure of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) also contains other interesting chemical elements:

Manganese (Mn) 2 atoms
Copper (Cu) 6 atoms
Iron (Fe) 16 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) (pdb code 7qho). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated), PDB code: 7qho:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7qho

Go back to Calcium Binding Sites List in 7qho
Calcium binding site 1 out of 2 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca604

b:45.3
occ:1.00
 OE1 D:GLU66 2.2 43.9 1.0
O D:GLY71 2.3 47.5 1.0
O D:GLU66 2.3 43.9 1.0
O D:THR69 2.3 46.8 1.0
OE1 D:GLN73 2.4 47.9 1.0
C D:GLY71 3.4 47.5 1.0
CD D:GLU66 3.5 43.9 1.0
H D:GLN73 3.5 47.9 1.0
H D:THR69 3.5 46.8 1.0
C D:GLU66 3.5 43.9 1.0
C D:THR69 3.6 46.8 1.0
CD D:GLN73 3.6 47.9 1.0
HA D:LEU72 3.6 45.7 1.0
O D:PRO70 3.8 46.8 1.0
C D:PRO70 3.8 46.8 1.0
HA D:LEU67 3.9 43.0 1.0
HE22 D:GLN73 4.0 47.9 1.0
HG3 D:GLU66 4.0 43.9 1.0
HA D:GLU66 4.1 43.9 1.0
N D:GLY71 4.1 47.5 1.0
HA D:PRO70 4.2 46.8 1.0
N D:GLN73 4.2 47.9 1.0
HB2 D:GLN73 4.2 47.9 1.0
NE2 D:GLN73 4.2 47.9 1.0
N D:THR69 4.2 46.8 1.0
N D:LEU72 4.3 45.7 1.0
CG D:GLU66 4.3 43.9 1.0
CA D:LEU72 4.3 45.7 1.0
OE2 D:GLU66 4.3 43.9 1.0
CA D:GLY71 4.4 47.5 1.0
CA D:PRO70 4.4 46.8 1.0
OG1 D:THR69 4.4 46.8 1.0
CA D:GLU66 4.4 43.9 1.0
HD23 D:LEU72 4.4 45.7 1.0
N D:PRO70 4.4 46.8 1.0
N D:LEU67 4.5 43.0 1.0
CA D:THR69 4.5 46.8 1.0
H D:GLY71 4.5 47.5 1.0
CA D:LEU67 4.5 43.0 1.0
H D:PHE68 4.6 45.7 1.0
CG D:GLN73 4.7 47.9 1.0
C D:LEU72 4.8 45.7 1.0
HD23 D:LEU67 4.8 43.0 1.0
HA3 D:GLY71 4.8 47.5 1.0
N D:PHE68 4.8 45.7 1.0
CB D:GLN73 4.8 47.9 1.0
C D:LEU67 4.9 43.0 1.0
CB D:GLU66 4.9 43.9 1.0
HG1 D:THR69 5.0 46.8 1.0

Calcium binding site 2 out of 2 in 7qho

Go back to Calcium Binding Sites List in 7qho
Calcium binding site 2 out of 2 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Ca604

b:45.3
occ:1.00
 OE1 Q:GLU66 2.2 43.9 1.0
O Q:GLY71 2.3 47.5 1.0
O Q:GLU66 2.3 43.9 1.0
O Q:THR69 2.3 46.8 1.0
OE1 Q:GLN73 2.4 47.9 1.0
C Q:GLY71 3.4 47.5 1.0
CD Q:GLU66 3.5 43.9 1.0
H Q:GLN73 3.5 47.9 1.0
H Q:THR69 3.5 46.8 1.0
C Q:GLU66 3.5 43.9 1.0
C Q:THR69 3.6 46.8 1.0
CD Q:GLN73 3.6 47.9 1.0
HA Q:LEU72 3.6 45.7 1.0
O Q:PRO70 3.8 46.8 1.0
C Q:PRO70 3.8 46.8 1.0
HA Q:LEU67 3.9 43.0 1.0
HE22 Q:GLN73 4.0 47.9 1.0
HG3 Q:GLU66 4.0 43.9 1.0
HA Q:GLU66 4.1 43.9 1.0
N Q:GLY71 4.1 47.5 1.0
HA Q:PRO70 4.2 46.8 1.0
N Q:GLN73 4.2 47.9 1.0
HB2 Q:GLN73 4.2 47.9 1.0
NE2 Q:GLN73 4.2 47.9 1.0
N Q:THR69 4.2 46.8 1.0
N Q:LEU72 4.3 45.7 1.0
CG Q:GLU66 4.3 43.9 1.0
CA Q:LEU72 4.3 45.7 1.0
OE2 Q:GLU66 4.3 43.9 1.0
CA Q:GLY71 4.4 47.5 1.0
CA Q:PRO70 4.4 46.8 1.0
OG1 Q:THR69 4.4 46.8 1.0
CA Q:GLU66 4.4 43.9 1.0
HD23 Q:LEU72 4.4 45.7 1.0
N Q:PRO70 4.4 46.8 1.0
N Q:LEU67 4.5 43.0 1.0
CA Q:THR69 4.5 46.8 1.0
H Q:GLY71 4.5 47.5 1.0
CA Q:LEU67 4.5 43.0 1.0
H Q:PHE68 4.6 45.7 1.0
CG Q:GLN73 4.7 47.9 1.0
C Q:LEU72 4.8 45.7 1.0
HD23 Q:LEU67 4.8 43.0 1.0
HA3 Q:GLY71 4.8 47.5 1.0
N Q:PHE68 4.8 45.7 1.0
CB Q:GLN73 4.8 47.9 1.0
C Q:LEU67 4.9 43.0 1.0
CB Q:GLU66 4.9 43.9 1.0
HG1 Q:THR69 5.0 46.8 1.0

Reference:

W.-C.Kao, C.Ortmann De Percin Northumberland, T.C.Cheng, J.Ortiz, A.Durand, O.Von Loeffelholz, O.Schilling, M.L.Biniossek, B.P.Klaholz, C.Hunte. Structural Basis For Safe and Efficient Energy Conversion in A Respiratory Supercomplex Nature Communications V. 13 545 2022.
PubMed: 35087070
DOI: 10.1038/S41467-022-28179-X
Page generated: Fri Jul 19 03:29:10 2024

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