Calcium in PDB 7rhq: Cryo-Em Structure of Xenopus Patched-1 in Complex with GAS1 and Sonic Hedgehog

The structure of Cryo-Em Structure of Xenopus Patched-1 in Complex with GAS1 and Sonic Hedgehog also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Calcium atom in the Cryo-Em Structure of Xenopus Patched-1 in Complex with GAS1 and Sonic Hedgehog (pdb code 7rhq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of Xenopus Patched-1 in Complex with GAS1 and Sonic Hedgehog, PDB code: 7rhq:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of Xenopus Patched-1 in Complex with GAS1 and Sonic Hedgehog


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Xenopus Patched-1 in Complex with GAS1 and Sonic Hedgehog within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca203 b:148.1 occ:1.00 OE2 C:GLU126 2.5 146.0 1.0 OE2 C:GLU90 2.6 146.6 1.0 OD1 C:ASP129 2.7 150.8 1.0 CD C:GLU90 3.0 146.6 1.0 CG C:GLU90 3.0 146.6 1.0 CG C:ASP129 3.3 150.8 1.0 CD C:GLU126 3.4 146.0 1.0 OD2 C:ASP129 3.9 150.8 1.0 CG C:GLU126 3.9 146.0 1.0 OE1 C:GLU90 4.1 146.6 1.0 CB C:ASP129 4.1 150.8 1.0 CA C:ASP129 4.2 150.8 1.0 OE1 C:GLU126 4.3 146.0 1.0 CB C:GLU90 4.3 146.6 1.0 CA C:CA204 4.7 157.5 1.0 N C:GLU130 4.7 149.6 1.0 O C:TRP128 4.9 153.2 1.0 OD1 C:ASP95 5.0 147.0 1.0

Calcium binding site 2 out of 2 in the Cryo-Em Structure of Xenopus Patched-1 in Complex with GAS1 and Sonic Hedgehog


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Xenopus Patched-1 in Complex with GAS1 and Sonic Hedgehog within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca204 b:157.5 occ:1.00 OE1 C:GLU90 2.5 146.6 1.0 OE2 C:GLU89 2.5 145.7 1.0 OD2 C:ASP95 2.5 147.0 1.0 OD1 C:ASP95 2.6 147.0 1.0 O C:THR125 2.6 146.1 1.0 OE2 C:GLU90 2.7 146.6 1.0 CD C:GLU89 2.8 145.7 1.0 CG C:ASP95 2.8 147.0 1.0 OE1 C:GLU89 2.9 145.7 1.0 CB C:GLU126 2.9 146.0 1.0 CD C:GLU90 2.9 146.6 1.0 CG C:GLU126 3.0 146.0 1.0 CA C:GLU126 3.0 146.0 1.0 C C:THR125 3.5 146.1 1.0 N C:GLU126 3.7 146.0 1.0 CD C:GLU126 3.7 146.0 1.0 CG C:GLU89 4.0 145.7 1.0 OE1 C:GLU126 4.0 146.0 1.0 CB C:ASP95 4.3 147.0 1.0 C C:GLU126 4.3 146.0 1.0 CG C:GLU90 4.5 146.6 1.0 OE2 C:GLU126 4.5 146.0 1.0 N C:GLU89 4.5 145.7 1.0 N C:GLY127 4.6 146.5 1.0 CA C:CA203 4.7 148.1 1.0 CA C:THR125 4.9 146.1 1.0 N C:GLU90 4.9 146.6 1.0

P.Huang, B.M.Wierbowski, T.Lian, C.Chan, S.Garcia-Linares, J.Jiang, A.Salic. Structural Basis For Catalyzed Assembly of the Sonic Hedgehog-PATCHED1 Signaling Complex. Dev.Cell V. 57 670 2022.
ISSN: ISSN 1534-5807
PubMed: 35231446
DOI: 10.1016/J.DEVCEL.2022.02.008