Calcium in PDB 7s5k: M. Xanthus Ferritin-Like Protein Encb
Protein crystallography data
The structure of M. Xanthus Ferritin-Like Protein Encb, PDB code: 7s5k
was solved by
E.Eren,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
63.44 /
1.95
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
127.49,
44.37,
127.96,
90,
114.08,
90
|
|
R / Rfree (%)
|
20.5 /
25.5
|
Other elements in 7s5k:
The structure of M. Xanthus Ferritin-Like Protein Encb also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the M. Xanthus Ferritin-Like Protein Encb
(pdb code 7s5k). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the
M. Xanthus Ferritin-Like Protein Encb, PDB code: 7s5k:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Calcium binding site 1 out
of 9 in 7s5k
Go back to
Calcium Binding Sites List in 7s5k
Calcium binding site 1 out
of 9 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca102
b:28.4
occ:0.32
|
O
|
B:HOH311
|
2.6
|
36.3
|
1.0
|
|
OE2
|
A:GLU58
|
2.9
|
35.2
|
1.0
|
|
OG1
|
A:THR31
|
2.9
|
24.5
|
1.0
|
|
CA
|
B:CA203
|
3.2
|
68.7
|
1.0
|
|
CA
|
A:GLU28
|
3.5
|
20.6
|
1.0
|
|
CB
|
A:THR31
|
3.6
|
27.2
|
1.0
|
|
CG
|
A:ARG27
|
3.7
|
26.3
|
1.0
|
|
N
|
A:GLU28
|
3.7
|
21.3
|
1.0
|
|
FE
|
A:FE101
|
3.7
|
77.6
|
1.0
|
|
O
|
A:ARG27
|
3.8
|
21.3
|
1.0
|
|
CG
|
A:GLU28
|
3.8
|
23.7
|
1.0
|
|
C
|
A:ARG27
|
3.8
|
22.2
|
1.0
|
|
OH
|
B:TYR35
|
3.9
|
30.1
|
1.0
|
|
CD
|
A:GLU58
|
3.9
|
35.8
|
1.0
|
|
CG2
|
B:THR31
|
3.9
|
28.0
|
1.0
|
|
OG1
|
B:THR31
|
4.0
|
25.9
|
1.0
|
|
CG2
|
A:THR31
|
4.1
|
27.4
|
1.0
|
|
CB
|
A:GLU28
|
4.2
|
20.5
|
1.0
|
|
CD
|
A:ARG27
|
4.4
|
31.7
|
1.0
|
|
NE
|
A:ARG27
|
4.4
|
28.8
|
1.0
|
|
CB
|
A:ARG27
|
4.5
|
23.7
|
1.0
|
|
OE1
|
A:GLU58
|
4.6
|
31.6
|
1.0
|
|
CB
|
B:THR31
|
4.6
|
26.5
|
1.0
|
|
C
|
A:GLU28
|
4.7
|
22.1
|
1.0
|
|
OE1
|
B:GLU58
|
4.8
|
31.7
|
1.0
|
|
CA
|
A:ARG27
|
4.8
|
23.7
|
1.0
|
|
O
|
A:GLU28
|
4.8
|
19.1
|
1.0
|
|
CG
|
A:GLU58
|
4.9
|
27.7
|
1.0
|
|
CZ
|
B:TYR35
|
4.9
|
28.2
|
1.0
|
|
Calcium binding site 2 out
of 9 in 7s5k
Go back to
Calcium Binding Sites List in 7s5k
Calcium binding site 2 out
of 9 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca203
b:68.7
occ:1.00
|
OG1
|
B:THR31
|
2.7
|
25.9
|
1.0
|
|
OE1
|
B:GLU58
|
3.0
|
31.7
|
1.0
|
|
O
|
A:HOH305
|
3.0
|
37.0
|
1.0
|
|
CA
|
A:CA102
|
3.2
|
28.4
|
0.3
|
|
CB
|
B:THR31
|
3.4
|
26.5
|
1.0
|
|
OG1
|
A:THR31
|
3.7
|
24.5
|
1.0
|
|
CG2
|
B:THR31
|
3.8
|
28.0
|
1.0
|
|
CG2
|
A:THR31
|
3.8
|
27.4
|
1.0
|
|
CG
|
B:ARG27
|
3.9
|
29.8
|
1.0
|
|
CA
|
B:GLU28
|
3.9
|
25.3
|
1.0
|
|
O
|
B:ARG27
|
3.9
|
21.5
|
1.0
|
|
CD
|
B:GLU58
|
4.0
|
35.7
|
1.0
|
|
FE
|
B:FE202
|
4.0
|
80.9
|
1.0
|
|
N
|
B:GLU28
|
4.1
|
22.3
|
1.0
|
|
C
|
B:ARG27
|
4.1
|
26.6
|
1.0
|
|
CG
|
B:GLU28
|
4.2
|
26.1
|
1.0
|
|
NE
|
B:ARG27
|
4.2
|
29.3
|
1.0
|
|
OH
|
A:TYR35
|
4.3
|
30.1
|
1.0
|
|
CD
|
B:ARG27
|
4.3
|
30.6
|
1.0
|
|
CB
|
A:THR31
|
4.4
|
27.2
|
1.0
|
|
CB
|
B:GLU28
|
4.6
|
27.7
|
1.0
|
|
NE
|
A:ARG27
|
4.6
|
28.8
|
1.0
|
|
CB
|
B:ARG27
|
4.6
|
25.9
|
1.0
|
|
OE2
|
B:GLU58
|
4.7
|
33.6
|
1.0
|
|
NH2
|
A:ARG27
|
4.8
|
22.2
|
1.0
|
|
OE2
|
A:GLU58
|
4.8
|
35.2
|
1.0
|
|
CA
|
B:THR31
|
4.8
|
24.6
|
1.0
|
|
CG
|
B:GLU58
|
4.9
|
29.7
|
1.0
|
|
C
|
B:GLU28
|
5.0
|
25.5
|
1.0
|
|
FE
|
A:FE101
|
5.0
|
77.6
|
1.0
|
|
Calcium binding site 3 out
of 9 in 7s5k
Go back to
Calcium Binding Sites List in 7s5k
Calcium binding site 3 out
of 9 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca203
b:37.7
occ:0.37
|
OG1
|
E:THR31
|
2.7
|
30.8
|
1.0
|
|
O
|
F:HOH301
|
2.8
|
35.6
|
1.0
|
|
OE1
|
E:GLU58
|
2.9
|
48.9
|
1.0
|
|
CA
|
F:CA202
|
3.1
|
35.7
|
0.4
|
|
CB
|
E:THR31
|
3.5
|
29.8
|
1.0
|
|
CA
|
E:GLU28
|
3.7
|
30.4
|
1.0
|
|
O
|
E:ARG27
|
3.7
|
28.8
|
1.0
|
|
FE
|
E:FE201
|
3.8
|
95.2
|
1.0
|
|
CG
|
E:ARG27
|
3.8
|
34.6
|
1.0
|
|
N
|
E:GLU28
|
3.8
|
28.0
|
1.0
|
|
CG2
|
E:THR31
|
3.9
|
32.3
|
1.0
|
|
C
|
E:ARG27
|
3.9
|
29.6
|
1.0
|
|
CG2
|
F:THR31
|
3.9
|
33.3
|
1.0
|
|
OG1
|
F:THR31
|
3.9
|
22.9
|
1.0
|
|
CG
|
E:GLU28
|
4.0
|
34.2
|
1.0
|
|
CD
|
E:GLU58
|
4.0
|
49.5
|
1.0
|
|
OH
|
F:TYR35
|
4.0
|
32.1
|
1.0
|
|
CD
|
E:ARG27
|
4.3
|
31.3
|
1.0
|
|
NE
|
E:ARG27
|
4.3
|
31.5
|
1.0
|
|
CB
|
E:GLU28
|
4.4
|
31.9
|
1.0
|
|
CB
|
E:ARG27
|
4.4
|
30.1
|
1.0
|
|
CB
|
F:THR31
|
4.5
|
28.3
|
1.0
|
|
OE2
|
E:GLU58
|
4.7
|
51.7
|
1.0
|
|
OE1
|
F:GLU58
|
4.8
|
48.3
|
1.0
|
|
C
|
E:GLU28
|
4.8
|
31.2
|
1.0
|
|
CA
|
E:ARG27
|
4.8
|
31.2
|
1.0
|
|
NE
|
F:ARG27
|
4.8
|
28.5
|
1.0
|
|
CG
|
E:GLU58
|
4.8
|
42.1
|
1.0
|
|
FE
|
F:FE201
|
4.8
|
106.2
|
1.0
|
|
CA
|
E:THR31
|
4.9
|
27.2
|
1.0
|
|
O
|
E:GLU28
|
4.9
|
26.0
|
1.0
|
|
Calcium binding site 4 out
of 9 in 7s5k
Go back to
Calcium Binding Sites List in 7s5k
Calcium binding site 4 out
of 9 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca202
b:35.7
occ:0.41
|
OE1
|
F:GLU58
|
2.7
|
48.3
|
1.0
|
|
OG1
|
F:THR31
|
2.9
|
22.9
|
1.0
|
|
CA
|
E:CA203
|
3.1
|
37.7
|
0.4
|
|
CB
|
F:THR31
|
3.5
|
28.3
|
1.0
|
|
FE
|
F:FE201
|
3.5
|
106.2
|
1.0
|
|
CD
|
F:GLU58
|
3.7
|
44.6
|
1.0
|
|
CG2
|
F:THR31
|
3.7
|
33.3
|
1.0
|
|
CA
|
F:GLU28
|
3.8
|
27.8
|
1.0
|
|
CG2
|
E:THR31
|
3.9
|
32.3
|
1.0
|
|
OG1
|
E:THR31
|
3.9
|
30.8
|
1.0
|
|
N
|
F:GLU28
|
4.0
|
28.1
|
1.0
|
|
OH
|
E:TYR35
|
4.0
|
28.9
|
1.0
|
|
CG
|
F:GLU28
|
4.0
|
32.4
|
1.0
|
|
O
|
F:ARG27
|
4.1
|
24.5
|
1.0
|
|
CG
|
F:ARG27
|
4.2
|
26.8
|
1.0
|
|
C
|
F:ARG27
|
4.2
|
25.6
|
1.0
|
|
OE2
|
F:GLU58
|
4.3
|
48.5
|
1.0
|
|
OE1
|
E:GLU58
|
4.4
|
48.9
|
1.0
|
|
CD
|
F:ARG27
|
4.5
|
30.1
|
1.0
|
|
CB
|
F:GLU28
|
4.5
|
29.6
|
1.0
|
|
NE
|
F:ARG27
|
4.5
|
28.5
|
1.0
|
|
CB
|
E:THR31
|
4.5
|
29.8
|
1.0
|
|
FE
|
E:FE201
|
4.6
|
95.2
|
1.0
|
|
CG
|
F:GLU58
|
4.6
|
38.4
|
1.0
|
|
C
|
F:GLU28
|
4.8
|
28.2
|
1.0
|
|
O
|
F:GLU28
|
4.9
|
27.0
|
1.0
|
|
NE
|
E:ARG27
|
4.9
|
31.5
|
1.0
|
|
CB
|
F:ARG27
|
4.9
|
27.2
|
1.0
|
|
CA
|
F:THR31
|
4.9
|
27.7
|
1.0
|
|
CD
|
E:GLU58
|
5.0
|
49.5
|
1.0
|
|
Calcium binding site 5 out
of 9 in 7s5k
Go back to
Calcium Binding Sites List in 7s5k
Calcium binding site 5 out
of 9 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca203
b:37.4
occ:0.33
|
OG1
|
G:THR31
|
2.5
|
29.4
|
1.0
|
|
O
|
H:HOH206
|
2.8
|
38.3
|
1.0
|
|
OE2
|
G:GLU58
|
3.0
|
48.3
|
1.0
|
|
CA
|
H:CA103
|
3.1
|
81.7
|
1.0
|
|
CB
|
G:THR31
|
3.3
|
36.0
|
1.0
|
|
O
|
G:ARG27
|
3.6
|
31.5
|
1.0
|
|
CA
|
G:GLU28
|
3.7
|
31.4
|
1.0
|
|
CG
|
G:ARG27
|
3.7
|
34.1
|
1.0
|
|
CG2
|
G:THR31
|
3.8
|
33.5
|
1.0
|
|
C
|
G:ARG27
|
3.8
|
31.3
|
1.0
|
|
N
|
G:GLU28
|
3.8
|
30.4
|
1.0
|
|
FE
|
G:FE201
|
3.8
|
42.1
|
0.3
|
|
OG1
|
H:THR31
|
4.0
|
27.6
|
1.0
|
|
CD
|
G:GLU58
|
4.0
|
42.7
|
1.0
|
|
CG
|
G:GLU28
|
4.1
|
33.9
|
1.0
|
|
OH
|
H:TYR35
|
4.2
|
37.5
|
1.0
|
|
CG2
|
H:THR31
|
4.2
|
34.9
|
1.0
|
|
CD
|
G:ARG27
|
4.4
|
38.1
|
1.0
|
|
NE
|
G:ARG27
|
4.4
|
36.4
|
1.0
|
|
CB
|
G:ARG27
|
4.4
|
31.9
|
1.0
|
|
CB
|
G:GLU28
|
4.4
|
32.1
|
1.0
|
|
NH2
|
H:ARG27
|
4.7
|
30.8
|
1.0
|
|
CB
|
H:THR31
|
4.7
|
30.2
|
1.0
|
|
CA
|
G:THR31
|
4.7
|
32.4
|
1.0
|
|
NE
|
H:ARG27
|
4.7
|
40.4
|
1.0
|
|
OE1
|
G:GLU58
|
4.7
|
44.8
|
1.0
|
|
C
|
G:GLU28
|
4.7
|
31.4
|
1.0
|
|
CA
|
G:ARG27
|
4.8
|
29.9
|
1.0
|
|
O
|
G:GLU28
|
4.9
|
26.5
|
1.0
|
|
FE
|
H:FE102
|
4.9
|
104.9
|
1.0
|
|
CG
|
G:GLU58
|
4.9
|
36.6
|
1.0
|
|
OE1
|
H:GLU58
|
5.0
|
43.4
|
1.0
|
|
Calcium binding site 6 out
of 9 in 7s5k
Go back to
Calcium Binding Sites List in 7s5k
Calcium binding site 6 out
of 9 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca103
b:81.7
occ:1.00
|
OE1
|
H:GLU58
|
2.8
|
43.4
|
1.0
|
|
OG1
|
H:THR31
|
2.9
|
27.6
|
1.0
|
|
CA
|
G:CA203
|
3.1
|
37.4
|
0.3
|
|
FE
|
H:FE102
|
3.5
|
104.9
|
1.0
|
|
CB
|
H:THR31
|
3.5
|
30.2
|
1.0
|
|
OG1
|
G:THR31
|
3.7
|
29.4
|
1.0
|
|
CD
|
H:GLU58
|
3.8
|
40.8
|
1.0
|
|
CG2
|
H:THR31
|
3.8
|
34.9
|
1.0
|
|
CA
|
H:GLU28
|
3.9
|
26.7
|
1.0
|
|
CG
|
H:GLU28
|
4.0
|
31.4
|
1.0
|
|
CG2
|
G:THR31
|
4.0
|
33.5
|
1.0
|
|
CG
|
H:ARG27
|
4.1
|
31.9
|
1.0
|
|
OH
|
G:TYR35
|
4.1
|
39.5
|
1.0
|
|
O
|
H:ARG27
|
4.1
|
29.2
|
1.0
|
|
N
|
H:GLU28
|
4.2
|
25.9
|
1.0
|
|
C
|
H:ARG27
|
4.3
|
28.4
|
1.0
|
|
NE
|
H:ARG27
|
4.4
|
40.4
|
1.0
|
|
OE2
|
H:GLU58
|
4.4
|
42.7
|
1.0
|
|
CB
|
H:GLU28
|
4.5
|
28.0
|
1.0
|
|
CB
|
G:THR31
|
4.5
|
36.0
|
1.0
|
|
CD
|
H:ARG27
|
4.5
|
37.0
|
1.0
|
|
OE2
|
G:GLU58
|
4.6
|
48.3
|
1.0
|
|
FE
|
G:FE201
|
4.7
|
42.1
|
0.3
|
|
CG
|
H:GLU58
|
4.8
|
36.1
|
1.0
|
|
CB
|
H:ARG27
|
4.9
|
30.2
|
1.0
|
|
NE
|
G:ARG27
|
4.9
|
36.4
|
1.0
|
|
C
|
H:GLU28
|
4.9
|
26.6
|
1.0
|
|
CA
|
H:THR31
|
5.0
|
30.8
|
1.0
|
|
Calcium binding site 7 out
of 9 in 7s5k
Go back to
Calcium Binding Sites List in 7s5k
Calcium binding site 7 out
of 9 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca202
b:71.0
occ:1.00
|
OG1
|
I:THR31
|
2.6
|
26.9
|
1.0
|
|
OE1
|
I:GLU58
|
3.1
|
55.5
|
1.0
|
|
CA
|
J:CA102
|
3.2
|
33.0
|
0.4
|
|
FE
|
I:FE201
|
3.3
|
118.8
|
1.0
|
|
CB
|
I:THR31
|
3.3
|
27.8
|
1.0
|
|
O
|
J:HOH202
|
3.4
|
37.0
|
1.0
|
|
CG2
|
I:THR31
|
3.7
|
30.2
|
1.0
|
|
O
|
I:ARG27
|
3.7
|
27.0
|
1.0
|
|
OG1
|
J:THR31
|
3.8
|
24.7
|
1.0
|
|
CA
|
I:GLU28
|
3.8
|
30.0
|
1.0
|
|
C
|
I:ARG27
|
4.0
|
26.6
|
1.0
|
|
N
|
I:GLU28
|
4.0
|
28.3
|
1.0
|
|
CG2
|
J:THR31
|
4.0
|
30.3
|
1.0
|
|
OH
|
J:TYR35
|
4.0
|
32.8
|
1.0
|
|
CG
|
I:ARG27
|
4.1
|
32.1
|
1.0
|
|
CG
|
I:GLU28
|
4.2
|
34.1
|
1.0
|
|
CD
|
I:GLU58
|
4.3
|
46.0
|
1.0
|
|
NE
|
I:ARG27
|
4.3
|
32.0
|
1.0
|
|
CD
|
I:ARG27
|
4.4
|
33.3
|
1.0
|
|
OE2
|
J:GLU58
|
4.5
|
44.0
|
1.0
|
|
CB
|
J:THR31
|
4.5
|
28.9
|
1.0
|
|
CB
|
I:GLU28
|
4.6
|
34.2
|
1.0
|
|
CB
|
I:ARG27
|
4.6
|
28.6
|
1.0
|
|
CA
|
I:THR31
|
4.7
|
26.0
|
1.0
|
|
NE
|
J:ARG27
|
4.7
|
33.2
|
1.0
|
|
C
|
I:GLU28
|
4.8
|
27.5
|
1.0
|
|
NH2
|
J:ARG27
|
4.9
|
24.4
|
1.0
|
|
CA
|
I:ARG27
|
4.9
|
28.2
|
1.0
|
|
O
|
I:GLU28
|
4.9
|
25.1
|
1.0
|
|
FE
|
I:FE203
|
5.0
|
40.4
|
0.4
|
|
Calcium binding site 8 out
of 9 in 7s5k
Go back to
Calcium Binding Sites List in 7s5k
Calcium binding site 8 out
of 9 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca102
b:33.0
occ:0.41
|
O
|
I:HOH304
|
2.6
|
31.2
|
1.0
|
|
OG1
|
J:THR31
|
2.8
|
24.7
|
1.0
|
|
OE2
|
J:GLU58
|
2.8
|
44.0
|
1.0
|
|
CA
|
I:CA202
|
3.2
|
71.0
|
1.0
|
|
CB
|
J:THR31
|
3.5
|
28.9
|
1.0
|
|
CA
|
J:GLU28
|
3.7
|
27.2
|
1.0
|
|
OG1
|
I:THR31
|
3.7
|
26.9
|
1.0
|
|
O
|
J:ARG27
|
3.8
|
21.5
|
1.0
|
|
CG
|
J:ARG27
|
3.8
|
27.2
|
1.0
|
|
CG2
|
I:THR31
|
3.8
|
30.2
|
1.0
|
|
FE
|
I:FE203
|
3.9
|
40.4
|
0.4
|
|
N
|
J:GLU28
|
3.9
|
24.0
|
1.0
|
|
CG
|
J:GLU28
|
3.9
|
26.2
|
1.0
|
|
CD
|
J:GLU58
|
3.9
|
43.4
|
1.0
|
|
C
|
J:ARG27
|
3.9
|
22.4
|
1.0
|
|
CG2
|
J:THR31
|
4.0
|
30.3
|
1.0
|
|
OH
|
I:TYR35
|
4.0
|
32.6
|
1.0
|
|
NE
|
J:ARG27
|
4.3
|
33.2
|
1.0
|
|
CD
|
J:ARG27
|
4.3
|
33.0
|
1.0
|
|
CB
|
J:GLU28
|
4.4
|
25.5
|
1.0
|
|
CB
|
I:THR31
|
4.4
|
27.8
|
1.0
|
|
CB
|
J:ARG27
|
4.5
|
28.8
|
1.0
|
|
OE1
|
I:GLU58
|
4.5
|
55.5
|
1.0
|
|
OE1
|
J:GLU58
|
4.7
|
37.0
|
1.0
|
|
FE
|
I:FE201
|
4.7
|
118.8
|
1.0
|
|
C
|
J:GLU28
|
4.8
|
26.5
|
1.0
|
|
NE
|
I:ARG27
|
4.8
|
32.0
|
1.0
|
|
CA
|
J:ARG27
|
4.9
|
27.5
|
1.0
|
|
CG
|
J:GLU58
|
4.9
|
33.1
|
1.0
|
|
NH2
|
I:ARG27
|
4.9
|
29.4
|
1.0
|
|
O
|
J:GLU28
|
4.9
|
25.4
|
1.0
|
|
CA
|
J:THR31
|
4.9
|
25.9
|
1.0
|
|
CZ
|
I:TYR35
|
5.0
|
29.5
|
1.0
|
|
Calcium binding site 9 out
of 9 in 7s5k
Go back to
Calcium Binding Sites List in 7s5k
Calcium binding site 9 out
of 9 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca103
b:39.2
occ:0.45
|
OG1
|
D:THR31
|
2.6
|
23.1
|
1.0
|
|
O
|
C:HOH306
|
3.0
|
33.7
|
1.0
|
|
O
|
C:HOH307
|
3.0
|
34.7
|
1.0
|
|
OE2
|
D:GLU58
|
3.1
|
42.1
|
1.0
|
|
CB
|
D:THR31
|
3.3
|
22.8
|
1.0
|
|
CG2
|
D:THR31
|
3.7
|
25.9
|
1.0
|
|
OG1
|
C:THR31
|
3.8
|
23.7
|
1.0
|
|
O
|
D:ARG27
|
3.8
|
24.6
|
1.0
|
|
CG
|
D:ARG27
|
3.8
|
29.0
|
1.0
|
|
CA
|
D:GLU28
|
3.8
|
27.9
|
1.0
|
|
CG2
|
C:THR31
|
3.9
|
25.4
|
1.0
|
|
OH
|
C:TYR35
|
4.0
|
34.5
|
1.0
|
|
N
|
D:GLU28
|
4.0
|
24.9
|
1.0
|
|
CD
|
D:GLU58
|
4.0
|
43.8
|
1.0
|
|
C
|
D:ARG27
|
4.0
|
24.9
|
1.0
|
|
CG
|
D:GLU28
|
4.3
|
31.9
|
1.0
|
|
NE
|
D:ARG27
|
4.4
|
32.4
|
1.0
|
|
CB
|
C:THR31
|
4.4
|
23.1
|
1.0
|
|
FE
|
D:FE102
|
4.5
|
118.9
|
1.0
|
|
CD
|
D:ARG27
|
4.5
|
31.1
|
1.0
|
|
OE1
|
D:GLU58
|
4.6
|
44.5
|
1.0
|
|
CB
|
D:GLU28
|
4.6
|
28.3
|
1.0
|
|
CB
|
D:ARG27
|
4.7
|
30.1
|
1.0
|
|
NE
|
C:ARG27
|
4.7
|
30.5
|
1.0
|
|
CA
|
D:THR31
|
4.7
|
23.9
|
1.0
|
|
NH2
|
C:ARG27
|
4.8
|
29.8
|
1.0
|
|
C
|
D:GLU28
|
4.9
|
24.7
|
1.0
|
|
CG
|
D:GLU58
|
5.0
|
34.8
|
1.0
|
|
CZ
|
C:TYR35
|
5.0
|
30.2
|
1.0
|
|
O
|
D:GLU28
|
5.0
|
21.6
|
1.0
|
|
CA
|
D:ARG27
|
5.0
|
26.4
|
1.0
|
|
Reference:
E.Eren,
B.Wang,
D.C.Winkler,
N.R.Watts,
A.C.Steven,
P.T.Wingfield.
Structural Characterization of the Myxococcus Xanthus Encapsulin and Ferritin-Like Cargo System Gives Insight Into Its Iron Storage Mechanism. Structure V. 30 551 2022.
ISSN: ISSN 0969-2126
PubMed: 35150605
DOI: 10.1016/J.STR.2022.01.008
Page generated: Fri Jul 19 03:54:47 2024
|
