Calcium in PDB 7s89: Open Apo-State Cryo-Em Structure of Human TRPV6 in CNW11 Nanodiscs

The binding sites of Calcium atom in the Open Apo-State Cryo-Em Structure of Human TRPV6 in CNW11 Nanodiscs (pdb code 7s89). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Open Apo-State Cryo-Em Structure of Human TRPV6 in CNW11 Nanodiscs, PDB code: 7s89:

Calcium binding site 1 out of 1 in the Open Apo-State Cryo-Em Structure of Human TRPV6 in CNW11 Nanodiscs


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Open Apo-State Cryo-Em Structure of Human TRPV6 in CNW11 Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca813 b:1.4 occ:1.00 OD1 A:ASP542 2.5 5.6 1.0 OD1 D:ASP542 2.5 6.3 1.0 OD1 C:ASP542 2.5 6.6 1.0 OD1 B:ASP542 2.5 4.8 1.0 OD2 A:ASP542 2.7 5.6 1.0 OD2 D:ASP542 2.7 6.3 1.0 OD2 C:ASP542 2.7 6.6 1.0 OD2 B:ASP542 2.7 4.8 1.0 CG A:ASP542 2.9 5.6 1.0 CG D:ASP542 2.9 6.3 1.0 CG C:ASP542 2.9 6.6 1.0 CG B:ASP542 2.9 4.8 1.0 CB A:ASP542 4.3 5.6 1.0 CB D:ASP542 4.3 6.3 1.0 CB C:ASP542 4.3 6.6 1.0 CB B:ASP542 4.3 4.8 1.0 O B:HOH817 4.6 34.6 1.0 O C:HOH818 4.6 25.9 1.0 O A:HOH918 4.6 29.4 1.0 O D:HOH818 4.6 26.8 1.0 N A:ASP542 4.9 5.6 1.0 N B:ASP542 4.9 4.8 1.0 N D:ASP542 4.9 6.3 1.0 N C:ASP542 4.9 6.6 1.0 CA A:ASP542 4.9 5.6 1.0 CA D:ASP542 4.9 6.3 1.0 CA B:ASP542 4.9 4.8 1.0 CA C:ASP542 4.9 6.6 1.0

A.Neuberger, K.D.Nadezhdin, A.I.Sobolevsky. Structural Mechanisms of TRPV6 Inhibition By Ruthenium Red and Econazole. Nat Commun V. 12 6284 2021.
ISSN: ESSN 2041-1723
PubMed: 34725357
DOI: 10.1038/S41467-021-26608-X