Calcium in PDB 7stv: Crystal Structure of Sulfatase From Pedobacter Yulinensis

The structure of Crystal Structure of Sulfatase From Pedobacter Yulinensis, PDB code: 7stv was solved by A.O'malley, C.R.Schlachter, L.L.Grimes, J.J.Tomashek, A.L.Lee, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.23 / 2.35
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	82.728, 82.728, 115.292, 90, 90, 120
R / Rfree (%)	17.2 / 23

The structure of Crystal Structure of Sulfatase From Pedobacter Yulinensis also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Sodium	(Na)	2 atoms

The binding sites of Calcium atom in the Crystal Structure of Sulfatase From Pedobacter Yulinensis (pdb code 7stv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Sulfatase From Pedobacter Yulinensis, PDB code: 7stv:

Calcium binding site 1 out of 1 in the Crystal Structure of Sulfatase From Pedobacter Yulinensis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Sulfatase From Pedobacter Yulinensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca506 b:47.0 occ:0.60 OD1 A:ASP12 2.2 44.5 1.0 OD1 A:ASP11 2.3 47.3 1.0 OD1 A:ASN273 2.4 39.9 1.0 OD2 A:ASP272 2.5 49.3 1.0 OD1 A:ASP272 2.5 45.1 1.0 OG1 A:DDZ51 2.7 43.3 1.0 CG A:ASP272 2.8 46.5 1.0 CG A:ASN273 3.1 42.8 1.0 ND2 A:ASN273 3.2 44.5 1.0 CG A:ASP12 3.4 48.5 1.0 N A:ASP12 3.5 45.1 1.0 CG A:ASP11 3.5 47.2 1.0 CB A:DDZ51 3.7 40.6 1.0 CA A:DDZ51 3.8 42.7 1.0 N A:DDZ51 4.0 41.6 1.0 CA A:ASP12 4.1 46.1 1.0 OD2 A:ASP12 4.2 51.3 1.0 C A:ASP11 4.2 46.6 1.0 NZ A:LYS289 4.2 48.3 1.0 OG2 A:DDZ51 4.2 43.4 1.0 CB A:ASP272 4.2 44.5 1.0 O6 A:CIT501 4.3 56.6 1.0 CA A:ASP11 4.3 47.1 1.0 CB A:ASP12 4.3 46.5 1.0 CE A:LYS289 4.3 47.2 1.0 OD2 A:ASP11 4.3 47.8 1.0 NZ A:LYS107 4.4 49.6 1.0 CB A:ASP11 4.5 47.2 1.0 CB A:ASN273 4.5 42.8 1.0 NH2 A:ARG55 4.5 46.0 1.0 N A:ASN273 4.6 42.1 1.0 CD2 A:HIS191 4.7 46.0 1.0 C A:VAL50 4.8 42.1 1.0 C A:ASP272 4.9 43.4 1.0 CD A:LYS289 4.9 46.6 1.0

C.R.Schlachter, A.O'malley, L.L.Grimes, J.J.Tomashek, M.Chruszcz, L.A.Lee. Purification, Characterization, and Structural Studies of A Sulfatase From Pedobacter Yulinensis . Molecules V. 27 2021.
ISSN: ESSN 1420-3049
PubMed: 35011319
DOI: 10.3390/MOLECULES27010087