Calcium in PDB 7t3s: Crystal Structure of Mouse Cadherin-23 EC8-9

The structure of Crystal Structure of Mouse Cadherin-23 EC8-9, PDB code: 7t3s was solved by J.S.Sandhu, P.De La Torre, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.21 / 2.97
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	41.827, 56.194, 93.853, 90, 90, 90
R / Rfree (%)	21.4 / 29.9

The structure of Crystal Structure of Mouse Cadherin-23 EC8-9 also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Calcium atom in the Crystal Structure of Mouse Cadherin-23 EC8-9 (pdb code 7t3s). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of Mouse Cadherin-23 EC8-9, PDB code: 7t3s:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Crystal Structure of Mouse Cadherin-23 EC8-9


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Mouse Cadherin-23 EC8-9 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1001 b:32.2 occ:1.00 O A:ASN787 2.2 41.5 1.0 O A:ASN751 2.3 47.8 1.0 OD2 A:ASP781 2.3 37.5 1.0 OD1 A:ASN749 2.4 46.8 1.0 OD2 A:ASP783 2.4 46.7 1.0 OD2 A:ASP839 2.5 35.1 1.0 OD1 A:ASP781 3.0 39.2 1.0 CG A:ASP781 3.0 39.1 1.0 C A:ASN751 3.4 48.3 1.0 C A:ASN787 3.4 42.4 1.0 CG A:ASP783 3.4 45.0 1.0 CG A:ASP839 3.5 36.0 1.0 CG A:ASN749 3.5 47.7 1.0 CB A:ASP783 3.8 44.2 1.0 CB A:ASP839 4.0 36.7 1.0 N A:ASN751 4.0 50.0 1.0 CA A:ASN751 4.1 49.5 1.0 ND2 A:ASN749 4.1 47.1 1.0 CB A:ASN751 4.3 50.0 1.0 CA A:ASN787 4.3 44.6 1.0 N A:GLY788 4.4 41.9 1.0 N A:HIS752 4.4 47.4 1.0 OD1 A:ASP839 4.4 36.4 1.0 CB A:ASN787 4.5 43.9 1.0 CB A:ASP781 4.5 40.1 1.0 CA A:GLY788 4.5 42.0 1.0 OD1 A:ASP783 4.5 44.9 1.0 CA A:HIS752 4.7 46.7 1.0 C A:HIS752 4.7 45.0 1.0 CB A:ASN749 4.8 49.4 1.0 CD1 A:LEU845 4.8 45.5 1.0 CA A:ASN749 4.9 50.9 1.0 N A:ASP750 4.9 51.8 1.0 C A:ASN749 4.9 51.3 1.0 O A:HIS752 5.0 43.9 1.0

Calcium binding site 2 out of 3 in the Crystal Structure of Mouse Cadherin-23 EC8-9


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Mouse Cadherin-23 EC8-9 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1002 b:38.3 occ:1.00 OD1 A:ASN861 2.1 40.9 1.0 OD2 A:ASP946 2.3 52.2 1.0 O A:ASN863 2.4 59.4 1.0 OD2 A:ASP893 2.4 42.2 1.0 OD2 A:ASP895 2.4 49.1 1.0 O A:ASN899 2.5 36.5 1.0 OD1 A:ASP893 2.9 43.5 1.0 CG A:ASP893 3.0 44.3 1.0 CG A:ASN861 3.3 42.6 1.0 CG A:ASP895 3.4 49.0 1.0 CG A:ASP946 3.4 51.7 1.0 C A:ASN863 3.5 59.0 1.0 C A:ASN899 3.7 36.5 1.0 CB A:ASP895 3.8 50.1 1.0 CB A:ASP946 4.0 51.3 1.0 ND2 A:ASN861 4.0 44.3 1.0 N A:ASP864 4.3 63.9 1.0 CB A:ASN899 4.3 36.5 1.0 CA A:ASN899 4.4 37.4 1.0 CA A:ASN863 4.4 55.2 1.0 CB A:ASP893 4.4 45.9 1.0 OD1 A:ASP946 4.4 52.6 1.0 CA A:ASP864 4.5 66.3 1.0 CA A:ASN861 4.5 42.1 1.0 CB A:ASN861 4.5 42.2 1.0 N A:ASN863 4.5 52.0 1.0 OD1 A:ASP895 4.5 48.5 1.0 N A:GLY900 4.7 36.2 1.0 C A:ASN861 4.7 43.2 1.0 CB A:ASN863 4.7 55.3 1.0 CB A:LYS952 4.8 58.4 1.0 C A:ASP864 4.8 65.8 1.0 O A:ASN861 4.9 44.4 1.0 CA A:GLY900 4.9 35.5 1.0 CD A:LYS952 5.0 59.8 1.0

Calcium binding site 3 out of 3 in the Crystal Structure of Mouse Cadherin-23 EC8-9


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Mouse Cadherin-23 EC8-9 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1003 b:43.3 occ:1.00 OE2 A:GLU766 2.3 46.4 1.0 O A:LEU860 2.3 38.9 1.0 OD1 A:ASP859 2.3 43.3 1.0 OD1 A:ASP862 2.4 46.9 1.0 OE1 A:GLU820 2.5 55.8 1.0 OD1 A:ASP895 2.6 48.5 1.0 OE2 A:GLU820 3.1 52.9 1.0 CD A:GLU820 3.1 55.9 1.0 CD A:GLU766 3.3 47.1 1.0 CG A:ASP862 3.4 47.5 1.0 CG A:ASP859 3.4 42.0 1.0 C A:LEU860 3.5 39.6 1.0 CG A:ASP895 3.5 49.0 1.0 N A:LEU860 3.6 40.0 1.0 OE1 A:GLU766 3.7 47.2 1.0 NA A:NA1004 3.8 44.5 1.0 OD2 A:ASP859 4.0 42.7 1.0 OD2 A:ASP862 4.0 47.0 1.0 N A:ASP862 4.0 45.1 1.0 CA A:LEU860 4.1 40.1 1.0 OD2 A:ASP895 4.2 49.1 1.0 CB A:ASP895 4.3 50.1 1.0 CB A:ASP862 4.4 47.8 1.0 CG A:GLU820 4.5 57.3 1.0 CA A:ASP895 4.5 51.1 1.0 CA A:ASP859 4.5 40.3 1.0 CB A:ASP859 4.5 41.2 1.0 C A:ASP859 4.5 39.7 1.0 N A:ASN861 4.5 40.3 1.0 CB A:LEU860 4.6 40.5 1.0 CG A:GLU766 4.6 47.0 1.0 NE A:ARG819 4.7 54.6 1.0 CA A:ASP862 4.7 47.7 1.0 N A:ASN863 4.8 52.0 1.0 CB A:ARG819 4.8 53.5 1.0 CA A:ASN861 4.8 42.1 1.0 OD1 A:ASN863 4.9 59.4 1.0 C A:ASN861 5.0 43.2 1.0

J.S.Sandhu, P.De La Torre, M.Sotomayor. Crystal Structure of Mouse Cadherin-23 EC8-9 To Be Published.