Calcium in PDB 7u60: Integrin ALAPHIIBBETA3 Complex with Crgdfv
Protein crystallography data
The structure of Integrin ALAPHIIBBETA3 Complex with Crgdfv, PDB code: 7u60
was solved by
J.Zhu,
F.Y.Lin,
J.Zhu,
T.A.Springer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.60 /
2.55
|
|
Space group
|
P 21 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
260.89,
145.77,
105.16,
90,
90,
90
|
|
R / Rfree (%)
|
18.8 /
22.5
|
Other elements in 7u60:
The structure of Integrin ALAPHIIBBETA3 Complex with Crgdfv also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Integrin ALAPHIIBBETA3 Complex with Crgdfv
(pdb code 7u60). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Integrin ALAPHIIBBETA3 Complex with Crgdfv, PDB code: 7u60:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 7u60
Go back to
Calcium Binding Sites List in 7u60
Calcium binding site 1 out
of 8 in the Integrin ALAPHIIBBETA3 Complex with Crgdfv
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Integrin ALAPHIIBBETA3 Complex with Crgdfv within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:32.7
occ:1.00
|
OD1
|
A:ASP245
|
2.3
|
36.5
|
1.0
|
|
O
|
A:THR250
|
2.3
|
41.6
|
1.0
|
|
OE2
|
A:GLU252
|
2.4
|
38.8
|
1.0
|
|
O
|
A:ASP247
|
2.4
|
44.7
|
1.0
|
|
OE1
|
A:GLU243
|
2.4
|
29.9
|
1.0
|
|
OE2
|
A:GLU243
|
2.4
|
30.2
|
1.0
|
|
OE1
|
A:GLU252
|
2.5
|
29.4
|
1.0
|
|
OG1
|
A:THR250
|
2.5
|
45.4
|
1.0
|
|
CD
|
A:GLU243
|
2.7
|
28.2
|
1.0
|
|
CD
|
A:GLU252
|
2.8
|
36.4
|
1.0
|
|
CG
|
A:ASP245
|
3.2
|
36.7
|
1.0
|
|
C
|
A:THR250
|
3.2
|
45.6
|
1.0
|
|
C
|
A:ASP247
|
3.5
|
46.2
|
1.0
|
|
OD2
|
A:ASP245
|
3.5
|
49.3
|
1.0
|
|
CB
|
A:THR250
|
3.6
|
42.6
|
1.0
|
|
CA
|
A:THR250
|
3.8
|
42.1
|
1.0
|
|
N
|
A:THR250
|
4.0
|
56.4
|
1.0
|
|
N
|
A:ASP247
|
4.1
|
54.1
|
1.0
|
|
CG
|
A:GLU243
|
4.1
|
27.6
|
1.0
|
|
N
|
A:THR251
|
4.2
|
37.0
|
1.0
|
|
N
|
A:ASP245
|
4.2
|
30.9
|
1.0
|
|
CA
|
A:ASP247
|
4.2
|
48.5
|
1.0
|
|
CG
|
A:GLU252
|
4.3
|
25.9
|
1.0
|
|
CB
|
A:ASP245
|
4.4
|
37.9
|
1.0
|
|
N
|
A:PHE244
|
4.5
|
29.0
|
1.0
|
|
CB
|
A:ASP247
|
4.5
|
51.0
|
1.0
|
|
CA
|
A:GLU243
|
4.5
|
25.3
|
1.0
|
|
N
|
A:LEU248
|
4.6
|
46.5
|
1.0
|
|
CA
|
A:THR251
|
4.6
|
44.4
|
1.0
|
|
CA
|
A:ASP245
|
4.7
|
40.4
|
1.0
|
|
N
|
A:GLY246
|
4.7
|
40.2
|
1.0
|
|
CA
|
A:LEU248
|
4.7
|
45.3
|
1.0
|
|
CB
|
A:GLU243
|
4.7
|
34.8
|
1.0
|
|
C
|
A:ASP245
|
4.8
|
39.2
|
1.0
|
|
N
|
A:GLU252
|
4.8
|
31.7
|
1.0
|
|
CG2
|
A:THR250
|
4.9
|
31.8
|
1.0
|
|
C
|
A:THR251
|
4.9
|
37.1
|
1.0
|
|
C
|
A:GLU243
|
5.0
|
25.6
|
1.0
|
|
C
|
A:LEU248
|
5.0
|
46.9
|
1.0
|
|
Calcium binding site 2 out
of 8 in 7u60
Go back to
Calcium Binding Sites List in 7u60
Calcium binding site 2 out
of 8 in the Integrin ALAPHIIBBETA3 Complex with Crgdfv
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Integrin ALAPHIIBBETA3 Complex with Crgdfv within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca502
b:26.5
occ:1.00
|
OD1
|
A:ASN299
|
2.3
|
28.8
|
1.0
|
|
O
|
A:HOH602
|
2.3
|
22.0
|
1.0
|
|
OD1
|
A:ASP301
|
2.4
|
51.4
|
1.0
|
|
O
|
A:ARG303
|
2.4
|
25.2
|
1.0
|
|
OD1
|
A:ASP297
|
2.5
|
25.1
|
1.0
|
|
OD1
|
A:ASP305
|
2.5
|
32.6
|
1.0
|
|
OD2
|
A:ASP305
|
2.5
|
36.5
|
1.0
|
|
OD2
|
A:ASP301
|
2.7
|
35.1
|
1.0
|
|
CG
|
A:ASP301
|
2.8
|
34.9
|
1.0
|
|
CG
|
A:ASP305
|
2.8
|
24.8
|
1.0
|
|
CG
|
A:ASN299
|
3.4
|
31.2
|
1.0
|
|
C
|
A:ARG303
|
3.5
|
25.6
|
1.0
|
|
CG
|
A:ASP297
|
3.6
|
35.3
|
1.0
|
|
ND2
|
A:ASN299
|
3.9
|
31.2
|
1.0
|
|
CB
|
A:ARG303
|
4.0
|
41.3
|
1.0
|
|
N
|
A:ARG303
|
4.0
|
37.6
|
1.0
|
|
CA
|
A:ARG303
|
4.1
|
36.5
|
1.0
|
|
CB
|
A:ASP301
|
4.3
|
29.8
|
1.0
|
|
CB
|
A:ASP305
|
4.3
|
30.1
|
1.0
|
|
CB
|
A:ASP297
|
4.4
|
23.8
|
1.0
|
|
CA
|
A:ASP297
|
4.4
|
33.9
|
1.0
|
|
N
|
A:ASN299
|
4.5
|
24.4
|
1.0
|
|
OD2
|
A:ASP297
|
4.5
|
30.3
|
1.0
|
|
N
|
A:ASP305
|
4.6
|
22.6
|
1.0
|
|
C
|
A:HIS304
|
4.6
|
23.4
|
1.0
|
|
N
|
A:ASP301
|
4.6
|
33.3
|
1.0
|
|
N
|
A:VAL298
|
4.6
|
25.1
|
1.0
|
|
CD2
|
A:LEU332
|
4.6
|
24.6
|
1.0
|
|
N
|
A:HIS304
|
4.7
|
40.9
|
1.0
|
|
CB
|
A:ASN299
|
4.7
|
26.2
|
1.0
|
|
N
|
A:GLN333
|
4.8
|
29.7
|
1.0
|
|
O
|
A:HIS304
|
4.8
|
24.1
|
1.0
|
|
O
|
A:GLN333
|
4.8
|
33.2
|
1.0
|
|
C
|
A:ASP297
|
4.9
|
28.2
|
1.0
|
|
CA
|
A:ASN299
|
4.9
|
25.6
|
1.0
|
|
CA
|
A:ASP305
|
4.9
|
22.9
|
1.0
|
|
CA
|
A:ASP301
|
4.9
|
32.4
|
1.0
|
|
C
|
A:ASN299
|
5.0
|
34.0
|
1.0
|
|
Calcium binding site 3 out
of 8 in 7u60
Go back to
Calcium Binding Sites List in 7u60
Calcium binding site 3 out
of 8 in the Integrin ALAPHIIBBETA3 Complex with Crgdfv
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Integrin ALAPHIIBBETA3 Complex with Crgdfv within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca503
b:22.0
occ:1.00
|
O
|
A:TYR371
|
2.3
|
37.8
|
1.0
|
|
OD1
|
A:ASP367
|
2.4
|
35.9
|
1.0
|
|
OD1
|
A:ASP365
|
2.4
|
32.0
|
1.0
|
|
O
|
A:HOH690
|
2.4
|
23.9
|
1.0
|
|
OD1
|
A:ASP373
|
2.4
|
20.9
|
1.0
|
|
OD1
|
A:ASP369
|
2.5
|
31.3
|
1.0
|
|
OD2
|
A:ASP373
|
2.5
|
20.4
|
1.0
|
|
CG
|
A:ASP373
|
2.8
|
20.3
|
1.0
|
|
CG
|
A:ASP369
|
3.4
|
24.5
|
1.0
|
|
C
|
A:TYR371
|
3.4
|
25.3
|
1.0
|
|
CG
|
A:ASP367
|
3.5
|
25.6
|
1.0
|
|
CG
|
A:ASP365
|
3.5
|
29.6
|
1.0
|
|
OD2
|
A:ASP369
|
3.8
|
24.7
|
1.0
|
|
OD2
|
A:ASP367
|
3.9
|
38.0
|
1.0
|
|
N
|
A:TYR371
|
4.1
|
30.8
|
1.0
|
|
CA
|
A:TYR371
|
4.2
|
23.9
|
1.0
|
|
CA
|
A:ASP365
|
4.2
|
25.3
|
1.0
|
|
CB
|
A:TYR371
|
4.2
|
24.1
|
1.0
|
|
N
|
A:LEU366
|
4.2
|
25.6
|
1.0
|
|
CB
|
A:ASP373
|
4.3
|
20.9
|
1.0
|
|
N
|
A:ASP367
|
4.3
|
21.2
|
1.0
|
|
OD2
|
A:ASP365
|
4.3
|
23.8
|
1.0
|
|
CB
|
A:ASP365
|
4.4
|
22.2
|
1.0
|
|
C
|
A:ASP365
|
4.5
|
25.1
|
1.0
|
|
N
|
A:ASN372
|
4.5
|
22.3
|
1.0
|
|
CD2
|
A:LEU393
|
4.5
|
24.5
|
1.0
|
|
C
|
A:ASN372
|
4.5
|
22.7
|
1.0
|
|
N
|
A:GLY394
|
4.5
|
29.1
|
1.0
|
|
N
|
A:ASP369
|
4.6
|
24.5
|
1.0
|
|
CB
|
A:ASP369
|
4.6
|
33.4
|
1.0
|
|
N
|
A:ASP373
|
4.6
|
27.3
|
1.0
|
|
CA
|
A:ASN372
|
4.7
|
21.3
|
1.0
|
|
CB
|
A:ASP367
|
4.8
|
22.1
|
1.0
|
|
O
|
A:ASN372
|
4.8
|
21.0
|
1.0
|
|
N
|
A:ARG368
|
4.8
|
41.3
|
1.0
|
|
O
|
A:GLY394
|
4.8
|
24.7
|
1.0
|
|
CB
|
A:LEU393
|
4.9
|
21.4
|
1.0
|
|
CA
|
A:ASP367
|
4.9
|
29.2
|
1.0
|
|
CA
|
A:ASP373
|
5.0
|
26.2
|
1.0
|
|
Calcium binding site 4 out
of 8 in 7u60
Go back to
Calcium Binding Sites List in 7u60
Calcium binding site 4 out
of 8 in the Integrin ALAPHIIBBETA3 Complex with Crgdfv
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Integrin ALAPHIIBBETA3 Complex with Crgdfv within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca504
b:20.8
occ:1.00
|
OD1
|
A:ASP426
|
2.3
|
38.5
|
1.0
|
|
O
|
A:TYR432
|
2.3
|
24.1
|
1.0
|
|
OD1
|
A:ASP434
|
2.4
|
29.5
|
1.0
|
|
OD1
|
A:ASN430
|
2.4
|
31.6
|
1.0
|
|
OD2
|
A:ASP434
|
2.4
|
29.8
|
1.0
|
|
O
|
A:HOH673
|
2.4
|
25.5
|
1.0
|
|
OD1
|
A:ASP428
|
2.4
|
30.7
|
1.0
|
|
CG
|
A:ASP434
|
2.7
|
25.0
|
1.0
|
|
CG
|
A:ASN430
|
3.4
|
24.7
|
1.0
|
|
CG
|
A:ASP426
|
3.4
|
27.1
|
1.0
|
|
CG
|
A:ASP428
|
3.4
|
30.6
|
1.0
|
|
C
|
A:TYR432
|
3.5
|
20.8
|
1.0
|
|
OD2
|
A:ASP428
|
3.8
|
21.8
|
1.0
|
|
ND2
|
A:ASN430
|
4.1
|
25.4
|
1.0
|
|
CA
|
A:ASP426
|
4.1
|
20.7
|
1.0
|
|
N
|
A:TYR432
|
4.1
|
22.2
|
1.0
|
|
CA
|
A:TYR432
|
4.2
|
26.4
|
1.0
|
|
OD2
|
A:ASP426
|
4.2
|
28.5
|
1.0
|
|
N
|
A:ILE427
|
4.2
|
31.1
|
1.0
|
|
CB
|
A:ASP434
|
4.2
|
19.5
|
1.0
|
|
CB
|
A:ASP426
|
4.2
|
21.5
|
1.0
|
|
O
|
A:ALA450
|
4.3
|
27.5
|
1.0
|
|
N
|
A:ASP428
|
4.3
|
39.8
|
1.0
|
|
CB
|
A:TYR432
|
4.3
|
21.4
|
1.0
|
|
N
|
A:ASN430
|
4.4
|
23.5
|
1.0
|
|
CB
|
A:ASN430
|
4.4
|
23.3
|
1.0
|
|
C
|
A:ASP426
|
4.5
|
20.9
|
1.0
|
|
N
|
A:PRO433
|
4.5
|
20.4
|
1.0
|
|
N
|
A:ASP434
|
4.6
|
27.7
|
1.0
|
|
C
|
A:PRO433
|
4.6
|
19.1
|
1.0
|
|
N
|
A:ALA450
|
4.6
|
19.4
|
1.0
|
|
CB
|
A:ASP428
|
4.7
|
22.2
|
1.0
|
|
CA
|
A:PRO433
|
4.7
|
19.7
|
1.0
|
|
N
|
A:ASP429
|
4.7
|
29.7
|
1.0
|
|
CA
|
A:ASN430
|
4.8
|
23.9
|
1.0
|
|
CA
|
A:ASP434
|
4.9
|
19.4
|
1.0
|
|
CA
|
A:ASP428
|
4.9
|
22.4
|
1.0
|
|
N
|
A:GLY431
|
4.9
|
23.7
|
1.0
|
|
Calcium binding site 5 out
of 8 in 7u60
Go back to
Calcium Binding Sites List in 7u60
Calcium binding site 5 out
of 8 in the Integrin ALAPHIIBBETA3 Complex with Crgdfv
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Integrin ALAPHIIBBETA3 Complex with Crgdfv within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca501
b:64.0
occ:1.00
|
OD1
|
C:ASP245
|
2.3
|
54.4
|
1.0
|
|
O
|
C:ASP247
|
2.4
|
71.3
|
1.0
|
|
O
|
C:THR250
|
2.4
|
51.3
|
1.0
|
|
OE1
|
C:GLU243
|
2.4
|
63.7
|
1.0
|
|
OE1
|
C:GLU252
|
2.4
|
52.8
|
1.0
|
|
OE2
|
C:GLU252
|
2.4
|
49.6
|
1.0
|
|
OE2
|
C:GLU243
|
2.4
|
61.0
|
1.0
|
|
OG1
|
C:THR250
|
2.5
|
64.9
|
1.0
|
|
CD
|
C:GLU243
|
2.7
|
56.3
|
1.0
|
|
CD
|
C:GLU252
|
2.7
|
49.7
|
1.0
|
|
C
|
C:THR250
|
3.1
|
60.5
|
1.0
|
|
CG
|
C:ASP245
|
3.2
|
56.6
|
1.0
|
|
CB
|
C:THR250
|
3.5
|
63.7
|
1.0
|
|
OD2
|
C:ASP245
|
3.5
|
66.6
|
1.0
|
|
C
|
C:ASP247
|
3.6
|
70.3
|
1.0
|
|
CA
|
C:THR250
|
3.7
|
61.4
|
1.0
|
|
N
|
C:THR250
|
3.9
|
81.4
|
1.0
|
|
N
|
C:THR251
|
4.0
|
67.8
|
1.0
|
|
CG
|
C:GLU243
|
4.2
|
52.5
|
1.0
|
|
CG
|
C:GLU252
|
4.3
|
51.5
|
1.0
|
|
N
|
C:ASP247
|
4.3
|
76.3
|
1.0
|
|
CA
|
C:THR251
|
4.3
|
61.2
|
1.0
|
|
CA
|
C:ASP247
|
4.4
|
73.3
|
1.0
|
|
CB
|
C:ASP245
|
4.4
|
54.9
|
1.0
|
|
N
|
C:ASP245
|
4.4
|
51.5
|
1.0
|
|
CB
|
C:ASP247
|
4.5
|
74.7
|
1.0
|
|
N
|
C:LEU248
|
4.6
|
72.0
|
1.0
|
|
N
|
C:GLU252
|
4.6
|
55.0
|
1.0
|
|
CA
|
C:GLU243
|
4.7
|
55.0
|
1.0
|
|
CA
|
C:LEU248
|
4.7
|
64.3
|
1.0
|
|
C
|
C:THR251
|
4.7
|
56.1
|
1.0
|
|
N
|
C:PHE244
|
4.7
|
61.0
|
1.0
|
|
O
|
C:HOH687
|
4.8
|
47.5
|
1.0
|
|
CG2
|
C:THR250
|
4.8
|
62.0
|
1.0
|
|
CA
|
C:ASP245
|
4.8
|
60.9
|
1.0
|
|
CB
|
C:GLU243
|
4.9
|
50.9
|
1.0
|
|
N
|
C:GLY246
|
4.9
|
59.4
|
1.0
|
|
C
|
C:LEU248
|
4.9
|
69.4
|
1.0
|
|
C
|
C:ASP245
|
5.0
|
56.6
|
1.0
|
|
Calcium binding site 6 out
of 8 in 7u60
Go back to
Calcium Binding Sites List in 7u60
Calcium binding site 6 out
of 8 in the Integrin ALAPHIIBBETA3 Complex with Crgdfv
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Integrin ALAPHIIBBETA3 Complex with Crgdfv within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca502
b:46.3
occ:1.00
|
OD1
|
C:ASN299
|
2.3
|
50.1
|
1.0
|
|
OD1
|
C:ASP301
|
2.4
|
74.8
|
1.0
|
|
OD1
|
C:ASP297
|
2.4
|
46.8
|
1.0
|
|
O
|
C:ARG303
|
2.5
|
46.5
|
1.0
|
|
OD1
|
C:ASP305
|
2.5
|
43.4
|
1.0
|
|
OD2
|
C:ASP305
|
2.5
|
49.4
|
1.0
|
|
OD2
|
C:ASP301
|
2.5
|
67.0
|
1.0
|
|
CG
|
C:ASP301
|
2.7
|
61.0
|
1.0
|
|
CG
|
C:ASP305
|
2.8
|
41.8
|
1.0
|
|
CG
|
C:ASN299
|
3.3
|
50.4
|
1.0
|
|
C
|
C:ARG303
|
3.5
|
47.4
|
1.0
|
|
CG
|
C:ASP297
|
3.6
|
54.3
|
1.0
|
|
ND2
|
C:ASN299
|
3.7
|
56.7
|
1.0
|
|
CB
|
C:ARG303
|
4.1
|
60.3
|
1.0
|
|
CA
|
C:ARG303
|
4.1
|
58.0
|
1.0
|
|
N
|
C:ARG303
|
4.2
|
60.0
|
1.0
|
|
CB
|
C:ASP301
|
4.2
|
53.8
|
1.0
|
|
CB
|
C:ASP305
|
4.3
|
39.5
|
1.0
|
|
CB
|
C:ASP297
|
4.3
|
44.2
|
1.0
|
|
CA
|
C:ASP297
|
4.3
|
50.4
|
1.0
|
|
OD2
|
C:ASP297
|
4.5
|
54.0
|
1.0
|
|
C
|
C:HIS304
|
4.5
|
48.4
|
1.0
|
|
N
|
C:ASN299
|
4.5
|
43.9
|
1.0
|
|
N
|
C:VAL298
|
4.6
|
49.1
|
1.0
|
|
O
|
C:HIS304
|
4.6
|
56.5
|
1.0
|
|
N
|
C:ASP305
|
4.6
|
40.5
|
1.0
|
|
N
|
C:HIS304
|
4.6
|
60.2
|
1.0
|
|
N
|
C:ASP301
|
4.6
|
51.9
|
1.0
|
|
CD2
|
C:LEU332
|
4.7
|
42.7
|
1.0
|
|
CB
|
C:ASN299
|
4.7
|
46.6
|
1.0
|
|
N
|
C:GLN333
|
4.7
|
45.3
|
1.0
|
|
O
|
C:GLN333
|
4.8
|
50.6
|
1.0
|
|
C
|
C:ASP297
|
4.9
|
49.6
|
1.0
|
|
CA
|
C:ASP305
|
4.9
|
39.5
|
1.0
|
|
CA
|
C:ASP301
|
4.9
|
54.1
|
1.0
|
|
CA
|
C:HIS304
|
4.9
|
45.2
|
1.0
|
|
Calcium binding site 7 out
of 8 in 7u60
Go back to
Calcium Binding Sites List in 7u60
Calcium binding site 7 out
of 8 in the Integrin ALAPHIIBBETA3 Complex with Crgdfv
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Integrin ALAPHIIBBETA3 Complex with Crgdfv within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca503
b:40.8
occ:1.00
|
O
|
C:TYR371
|
2.2
|
43.2
|
1.0
|
|
OD1
|
C:ASP365
|
2.3
|
47.6
|
1.0
|
|
O
|
C:HOH655
|
2.4
|
37.0
|
1.0
|
|
OD2
|
C:ASP373
|
2.4
|
37.5
|
1.0
|
|
OD1
|
C:ASP367
|
2.4
|
54.4
|
1.0
|
|
OD1
|
C:ASP373
|
2.4
|
37.8
|
1.0
|
|
OD1
|
C:ASP369
|
2.5
|
54.7
|
1.0
|
|
CG
|
C:ASP373
|
2.7
|
37.5
|
1.0
|
|
CG
|
C:ASP365
|
3.4
|
47.1
|
1.0
|
|
C
|
C:TYR371
|
3.4
|
56.0
|
1.0
|
|
CG
|
C:ASP367
|
3.5
|
48.6
|
1.0
|
|
CG
|
C:ASP369
|
3.5
|
56.2
|
1.0
|
|
OD2
|
C:ASP367
|
4.0
|
51.9
|
1.0
|
|
OD2
|
C:ASP369
|
4.0
|
56.3
|
1.0
|
|
N
|
C:LEU366
|
4.0
|
47.7
|
1.0
|
|
CA
|
C:ASP365
|
4.1
|
44.8
|
1.0
|
|
OD2
|
C:ASP365
|
4.1
|
60.3
|
1.0
|
|
N
|
C:TYR371
|
4.2
|
46.4
|
1.0
|
|
N
|
C:ASP367
|
4.2
|
52.0
|
1.0
|
|
CA
|
C:TYR371
|
4.2
|
44.6
|
1.0
|
|
CB
|
C:ASP373
|
4.3
|
38.2
|
1.0
|
|
CB
|
C:ASP365
|
4.3
|
42.8
|
1.0
|
|
C
|
C:ASP365
|
4.3
|
50.5
|
1.0
|
|
C
|
C:ASN372
|
4.4
|
42.1
|
1.0
|
|
CB
|
C:TYR371
|
4.4
|
44.4
|
1.0
|
|
N
|
C:ASN372
|
4.4
|
53.3
|
1.0
|
|
N
|
C:ASP369
|
4.5
|
52.1
|
1.0
|
|
CD2
|
C:LEU393
|
4.6
|
44.5
|
1.0
|
|
CA
|
C:ASN372
|
4.6
|
47.5
|
1.0
|
|
N
|
C:GLY394
|
4.6
|
37.9
|
1.0
|
|
N
|
C:ASP373
|
4.6
|
49.7
|
1.0
|
|
N
|
C:ARG368
|
4.7
|
56.6
|
1.0
|
|
O
|
C:ASN372
|
4.7
|
40.4
|
1.0
|
|
CB
|
C:ASP369
|
4.7
|
47.6
|
1.0
|
|
CB
|
C:ASP367
|
4.7
|
45.8
|
1.0
|
|
CA
|
C:ASP367
|
4.9
|
48.2
|
1.0
|
|
O
|
C:GLY394
|
4.9
|
46.3
|
1.0
|
|
CA
|
C:ASP373
|
5.0
|
44.8
|
1.0
|
|
Calcium binding site 8 out
of 8 in 7u60
Go back to
Calcium Binding Sites List in 7u60
Calcium binding site 8 out
of 8 in the Integrin ALAPHIIBBETA3 Complex with Crgdfv
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Integrin ALAPHIIBBETA3 Complex with Crgdfv within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca504
b:48.2
occ:1.00
|
O
|
C:TYR432
|
2.3
|
51.6
|
1.0
|
|
OD2
|
C:ASP434
|
2.3
|
41.6
|
1.0
|
|
OD1
|
C:ASN430
|
2.4
|
57.6
|
1.0
|
|
OD1
|
C:ASP428
|
2.4
|
43.0
|
1.0
|
|
OD1
|
C:ASP434
|
2.4
|
44.9
|
1.0
|
|
OD1
|
C:ASP426
|
2.4
|
55.5
|
1.0
|
|
O
|
C:HOH659
|
2.4
|
34.9
|
1.0
|
|
CG
|
C:ASP434
|
2.7
|
47.8
|
1.0
|
|
CG
|
C:ASP428
|
3.3
|
57.4
|
1.0
|
|
CG
|
C:ASN430
|
3.4
|
43.8
|
1.0
|
|
CG
|
C:ASP426
|
3.4
|
55.8
|
1.0
|
|
C
|
C:TYR432
|
3.5
|
45.8
|
1.0
|
|
OD2
|
C:ASP428
|
3.8
|
55.6
|
1.0
|
|
CA
|
C:ASP426
|
4.0
|
53.1
|
1.0
|
|
ND2
|
C:ASN430
|
4.1
|
43.5
|
1.0
|
|
CB
|
C:ASP434
|
4.1
|
34.3
|
1.0
|
|
N
|
C:TYR432
|
4.2
|
49.7
|
1.0
|
|
CB
|
C:ASP426
|
4.2
|
52.9
|
1.0
|
|
N
|
C:ILE427
|
4.2
|
49.2
|
1.0
|
|
CA
|
C:TYR432
|
4.2
|
45.7
|
1.0
|
|
N
|
C:ASP428
|
4.2
|
50.6
|
1.0
|
|
OD2
|
C:ASP426
|
4.3
|
62.3
|
1.0
|
|
O
|
C:ALA450
|
4.3
|
39.8
|
1.0
|
|
CB
|
C:TYR432
|
4.4
|
52.6
|
1.0
|
|
CB
|
C:ASN430
|
4.4
|
45.6
|
1.0
|
|
C
|
C:ASP426
|
4.4
|
55.5
|
1.0
|
|
C
|
C:PRO433
|
4.4
|
43.8
|
1.0
|
|
N
|
C:ASN430
|
4.4
|
52.8
|
1.0
|
|
N
|
C:ASP434
|
4.5
|
35.1
|
1.0
|
|
N
|
C:PRO433
|
4.5
|
43.9
|
1.0
|
|
N
|
C:ALA450
|
4.5
|
36.0
|
1.0
|
|
CB
|
C:ASP428
|
4.6
|
50.7
|
1.0
|
|
CA
|
C:PRO433
|
4.6
|
39.8
|
1.0
|
|
CA
|
C:ASP434
|
4.8
|
33.8
|
1.0
|
|
N
|
C:ASP429
|
4.8
|
60.4
|
1.0
|
|
O
|
C:PRO433
|
4.8
|
36.7
|
1.0
|
|
CA
|
C:ASP428
|
4.8
|
46.8
|
1.0
|
|
CA
|
C:ASN430
|
4.9
|
47.1
|
1.0
|
|
CB
|
C:ALA450
|
5.0
|
36.9
|
1.0
|
|
C
|
C:ASP428
|
5.0
|
59.0
|
1.0
|
|
Reference:
J.Zhu,
F.Y.Lin,
J.Zhu,
T.A.Springer.
Integrin Alpha Iib Beta 3 Headpiece with Fab Complex with Eptifibatide To Be Published.
Page generated: Fri Jul 19 04:41:26 2024
|
