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Calcium in PDB 7yo0: Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion

Other elements in 7yo0:

The structure of Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion (pdb code 7yo0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion, PDB code: 7yo0:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 7yo0

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Calcium binding site 1 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1103

b:38.4
occ:1.00
O A:SER600 2.5 51.7 1.0
O A:ARG514 2.5 41.5 1.0
OD2 A:ASP367 2.5 49.4 1.0
O A:SER533 2.5 43.6 1.0
OE1 A:GLU535 3.0 45.6 1.0
OE2 A:GLU535 3.2 45.6 1.0
CG A:ASP367 3.5 49.4 1.0
CD A:GLU535 3.5 45.6 1.0
C A:SER533 3.5 43.6 1.0
OG A:SER600 3.6 51.7 1.0
C A:ARG514 3.7 41.5 1.0
C A:SER600 3.7 51.7 1.0
OD1 A:ASP367 3.8 49.4 1.0
CA A:SER533 3.9 43.6 1.0
CB A:SER533 4.0 43.6 1.0
CA A:SER515 4.1 47.2 1.0
N A:SER515 4.3 47.2 1.0
CA A:SER600 4.4 51.7 1.0
N A:PHE516 4.5 56.0 1.0
C A:SER515 4.5 47.2 1.0
CB A:SER600 4.6 51.7 1.0
OG A:SER533 4.7 43.6 1.0
N A:ASP601 4.7 66.0 1.0
OD1 A:ASP601 4.7 66.0 1.0
N A:ASN534 4.7 46.0 1.0
N A:ARG514 4.7 41.5 1.0
CB A:ASP367 4.7 49.4 1.0
CA A:ARG514 4.8 41.5 1.0
CA A:ASP601 4.9 66.0 1.0
CB A:ASP601 5.0 66.0 1.0
CG A:GLU535 5.0 45.6 1.0

Calcium binding site 2 out of 8 in 7yo0

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Calcium binding site 2 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1104

b:38.2
occ:1.00
OD1 G:ASN449 1.9 30.0 1.0
O A:ASP892 2.5 39.4 1.0
CG G:ASN449 2.6 30.0 1.0
ND2 G:ASN449 2.6 30.0 1.0
O A:GLN889 2.6 31.4 1.0
OD1 A:ASP895 2.6 53.3 1.0
CG A:ASP895 3.5 53.3 1.0
C A:ASP892 3.7 39.4 1.0
OD2 A:ASP895 3.7 53.3 1.0
O A:ASP895 3.7 53.3 1.0
C A:GLN889 3.8 31.4 1.0
CB A:ASP897 3.8 69.5 1.0
CB G:ASN449 4.1 30.0 1.0
OD2 A:ASP897 4.1 69.5 1.0
CG A:ASP897 4.1 69.5 1.0
CA A:GLN893 4.2 46.9 1.0
O G:ASN449 4.3 30.0 1.0
CA A:GLN889 4.3 31.4 1.0
N A:GLN893 4.4 46.9 1.0
C A:ASP895 4.4 53.3 1.0
CB A:GLN889 4.5 31.4 1.0
O A:GLN893 4.5 46.9 1.0
C A:GLN893 4.5 46.9 1.0
C G:ASN449 4.7 30.0 1.0
CA G:ASN449 4.7 30.0 1.0
CA A:ASP897 4.7 69.5 1.0
N A:ASP897 4.7 69.5 1.0
CB A:ASP895 4.7 53.3 1.0
CA A:ASP892 4.8 39.4 1.0
N A:ASP895 4.8 53.3 1.0
OD1 A:ASP897 4.8 69.5 1.0
N A:PHE890 4.9 29.1 1.0
N A:ASP892 4.9 39.4 1.0
CA A:ASP895 4.9 53.3 1.0

Calcium binding site 3 out of 8 in 7yo0

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Calcium binding site 3 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1103

b:38.4
occ:1.00
O C:SER600 2.5 51.7 1.0
O C:ARG514 2.5 41.5 1.0
OD2 C:ASP367 2.5 49.4 1.0
O C:SER533 2.5 43.6 1.0
OE1 C:GLU535 3.0 45.6 1.0
OE2 C:GLU535 3.2 45.6 1.0
CG C:ASP367 3.5 49.4 1.0
CD C:GLU535 3.5 45.6 1.0
C C:SER533 3.5 43.6 1.0
OG C:SER600 3.6 51.7 1.0
C C:ARG514 3.7 41.5 1.0
C C:SER600 3.7 51.7 1.0
OD1 C:ASP367 3.8 49.4 1.0
CA C:SER533 3.9 43.6 1.0
CB C:SER533 4.0 43.6 1.0
CA C:SER515 4.1 47.2 1.0
N C:SER515 4.3 47.2 1.0
CA C:SER600 4.4 51.7 1.0
N C:PHE516 4.5 56.0 1.0
C C:SER515 4.5 47.2 1.0
CB C:SER600 4.6 51.7 1.0
OG C:SER533 4.7 43.6 1.0
N C:ASP601 4.7 66.0 1.0
OD1 C:ASP601 4.7 66.0 1.0
N C:ASN534 4.7 46.0 1.0
N C:ARG514 4.7 41.5 1.0
CB C:ASP367 4.7 49.4 1.0
CA C:ARG514 4.8 41.5 1.0
CA C:ASP601 4.9 66.0 1.0
CB C:ASP601 5.0 66.0 1.0
CG C:GLU535 5.0 45.6 1.0

Calcium binding site 4 out of 8 in 7yo0

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Calcium binding site 4 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1104

b:38.2
occ:1.00
OD1 A:ASN449 1.9 30.0 1.0
O C:ASP892 2.5 39.4 1.0
CG A:ASN449 2.6 30.0 1.0
ND2 A:ASN449 2.6 30.0 1.0
O C:GLN889 2.6 31.4 1.0
OD1 C:ASP895 2.6 53.3 1.0
CG C:ASP895 3.5 53.3 1.0
C C:ASP892 3.7 39.4 1.0
OD2 C:ASP895 3.7 53.3 1.0
O C:ASP895 3.7 53.3 1.0
C C:GLN889 3.8 31.4 1.0
CB C:ASP897 3.8 69.5 1.0
CB A:ASN449 4.1 30.0 1.0
OD2 C:ASP897 4.1 69.5 1.0
CG C:ASP897 4.1 69.5 1.0
CA C:GLN893 4.2 46.9 1.0
O A:ASN449 4.3 30.0 1.0
CA C:GLN889 4.3 31.4 1.0
N C:GLN893 4.4 46.9 1.0
C C:ASP895 4.4 53.3 1.0
CB C:GLN889 4.5 31.4 1.0
O C:GLN893 4.5 46.9 1.0
C C:GLN893 4.5 46.9 1.0
C A:ASN449 4.7 30.0 1.0
CA A:ASN449 4.7 30.0 1.0
CA C:ASP897 4.7 69.5 1.0
N C:ASP897 4.7 69.5 1.0
CB C:ASP895 4.7 53.3 1.0
CA C:ASP892 4.8 39.4 1.0
N C:ASP895 4.8 53.3 1.0
OD1 C:ASP897 4.8 69.5 1.0
N C:PHE890 4.9 29.1 1.0
N C:ASP892 4.9 39.4 1.0
CA C:ASP895 4.9 53.3 1.0

Calcium binding site 5 out of 8 in 7yo0

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Calcium binding site 5 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1103

b:38.4
occ:1.00
O E:SER600 2.5 51.7 1.0
O E:ARG514 2.5 41.5 1.0
OD2 E:ASP367 2.5 49.4 1.0
O E:SER533 2.5 43.6 1.0
OE1 E:GLU535 3.0 45.6 1.0
OE2 E:GLU535 3.2 45.6 1.0
CG E:ASP367 3.5 49.4 1.0
CD E:GLU535 3.5 45.6 1.0
C E:SER533 3.5 43.6 1.0
OG E:SER600 3.6 51.7 1.0
C E:ARG514 3.7 41.5 1.0
C E:SER600 3.7 51.7 1.0
OD1 E:ASP367 3.8 49.4 1.0
CA E:SER533 3.9 43.6 1.0
CB E:SER533 4.0 43.6 1.0
CA E:SER515 4.1 47.2 1.0
N E:SER515 4.3 47.2 1.0
CA E:SER600 4.4 51.7 1.0
N E:PHE516 4.5 56.0 1.0
C E:SER515 4.5 47.2 1.0
CB E:SER600 4.6 51.7 1.0
OG E:SER533 4.7 43.6 1.0
N E:ASP601 4.7 66.0 1.0
OD1 E:ASP601 4.7 66.0 1.0
N E:ASN534 4.7 46.0 1.0
N E:ARG514 4.7 41.5 1.0
CB E:ASP367 4.7 49.4 1.0
CA E:ARG514 4.8 41.5 1.0
CA E:ASP601 4.9 66.0 1.0
CB E:ASP601 5.0 66.0 1.0
CG E:GLU535 5.0 45.6 1.0

Calcium binding site 6 out of 8 in 7yo0

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Calcium binding site 6 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1104

b:38.2
occ:1.00
OD1 C:ASN449 1.9 30.0 1.0
O E:ASP892 2.5 39.4 1.0
CG C:ASN449 2.6 30.0 1.0
ND2 C:ASN449 2.6 30.0 1.0
O E:GLN889 2.6 31.4 1.0
OD1 E:ASP895 2.6 53.3 1.0
CG E:ASP895 3.5 53.3 1.0
C E:ASP892 3.7 39.4 1.0
OD2 E:ASP895 3.7 53.3 1.0
O E:ASP895 3.7 53.3 1.0
C E:GLN889 3.8 31.4 1.0
CB E:ASP897 3.8 69.5 1.0
CB C:ASN449 4.1 30.0 1.0
OD2 E:ASP897 4.1 69.5 1.0
CG E:ASP897 4.1 69.5 1.0
CA E:GLN893 4.2 46.9 1.0
O C:ASN449 4.3 30.0 1.0
CA E:GLN889 4.3 31.4 1.0
N E:GLN893 4.4 46.9 1.0
C E:ASP895 4.4 53.3 1.0
CB E:GLN889 4.5 31.4 1.0
O E:GLN893 4.5 46.9 1.0
C E:GLN893 4.5 46.9 1.0
C C:ASN449 4.7 30.0 1.0
CA C:ASN449 4.7 30.0 1.0
CA E:ASP897 4.7 69.5 1.0
N E:ASP897 4.7 69.5 1.0
CB E:ASP895 4.7 53.3 1.0
CA E:ASP892 4.8 39.4 1.0
N E:ASP895 4.8 53.3 1.0
OD1 E:ASP897 4.8 69.5 1.0
N E:PHE890 4.9 29.1 1.0
N E:ASP892 4.9 39.4 1.0
CA E:ASP895 4.9 53.3 1.0

Calcium binding site 7 out of 8 in 7yo0

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Calcium binding site 7 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca1103

b:38.4
occ:1.00
O G:SER600 2.5 51.7 1.0
O G:ARG514 2.5 41.5 1.0
OD2 G:ASP367 2.5 49.4 1.0
O G:SER533 2.5 43.6 1.0
OE1 G:GLU535 3.0 45.6 1.0
OE2 G:GLU535 3.2 45.6 1.0
CG G:ASP367 3.5 49.4 1.0
CD G:GLU535 3.5 45.6 1.0
C G:SER533 3.5 43.6 1.0
OG G:SER600 3.6 51.7 1.0
C G:ARG514 3.7 41.5 1.0
C G:SER600 3.7 51.7 1.0
OD1 G:ASP367 3.8 49.4 1.0
CA G:SER533 3.9 43.6 1.0
CB G:SER533 4.0 43.6 1.0
CA G:SER515 4.1 47.2 1.0
N G:SER515 4.3 47.2 1.0
CA G:SER600 4.4 51.7 1.0
N G:PHE516 4.5 56.0 1.0
C G:SER515 4.5 47.2 1.0
CB G:SER600 4.6 51.7 1.0
OG G:SER533 4.7 43.6 1.0
N G:ASP601 4.7 66.0 1.0
OD1 G:ASP601 4.7 66.0 1.0
N G:ASN534 4.7 46.0 1.0
N G:ARG514 4.7 41.5 1.0
CB G:ASP367 4.7 49.4 1.0
CA G:ARG514 4.8 41.5 1.0
CA G:ASP601 4.9 66.0 1.0
CB G:ASP601 5.0 66.0 1.0
CG G:GLU535 5.0 45.6 1.0

Calcium binding site 8 out of 8 in 7yo0

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Calcium binding site 8 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with Symmetry Expansion within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca1104

b:38.2
occ:1.00
OD1 E:ASN449 1.9 30.0 1.0
O G:ASP892 2.5 39.4 1.0
CG E:ASN449 2.6 30.0 1.0
ND2 E:ASN449 2.6 30.0 1.0
O G:GLN889 2.6 31.4 1.0
OD1 G:ASP895 2.6 53.3 1.0
CG G:ASP895 3.5 53.3 1.0
C G:ASP892 3.7 39.4 1.0
OD2 G:ASP895 3.7 53.3 1.0
O G:ASP895 3.7 53.3 1.0
C G:GLN889 3.8 31.4 1.0
CB G:ASP897 3.8 69.5 1.0
CB E:ASN449 4.1 30.0 1.0
OD2 G:ASP897 4.1 69.5 1.0
CG G:ASP897 4.1 69.5 1.0
CA G:GLN893 4.2 46.9 1.0
O E:ASN449 4.3 30.0 1.0
CA G:GLN889 4.3 31.4 1.0
N G:GLN893 4.4 46.9 1.0
C G:ASP895 4.4 53.3 1.0
CB G:GLN889 4.5 31.4 1.0
O G:GLN893 4.5 46.9 1.0
C G:GLN893 4.5 46.9 1.0
C E:ASN449 4.7 30.0 1.0
CA E:ASN449 4.7 30.0 1.0
CA G:ASP897 4.7 69.5 1.0
N G:ASP897 4.7 69.5 1.0
CB G:ASP895 4.7 53.3 1.0
CA G:ASP892 4.8 39.4 1.0
N G:ASP895 4.8 53.3 1.0
OD1 G:ASP897 4.8 69.5 1.0
N G:PHE890 4.9 29.1 1.0
N G:ASP892 4.9 39.4 1.0
CA G:ASP895 4.9 53.3 1.0

Reference:

D.Yamanouchi, D.Yamanouchi, O.Nureki. N/A N/A.
Page generated: Fri Jul 19 06:17:06 2024

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