Calcium in PDB 8b6q: X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology
Enzymatic activity of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology
All present enzymatic activity of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology:
3.8.1.5;
Protein crystallography data
The structure of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology, PDB code: 8b6q
was solved by
M.Tarnawski,
K.Johnsson,
J.Hiblot,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.39 /
2.60
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.53,
74.53,
177.84,
90,
90,
90
|
R / Rfree (%)
|
28.1 /
31.8
|
Other elements in 8b6q:
The structure of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology
(pdb code 8b6q). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the
X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology, PDB code: 8b6q:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
Calcium binding site 1 out
of 6 in 8b6q
Go back to
Calcium Binding Sites List in 8b6q
Calcium binding site 1 out
of 6 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca502
b:62.0
occ:1.00
|
O
|
A:TYR253
|
2.4
|
54.0
|
1.0
|
OD1
|
A:ASP249
|
2.4
|
76.4
|
1.0
|
OD1
|
A:ASN251
|
2.5
|
64.5
|
1.0
|
OE1
|
A:GLU258
|
2.5
|
58.9
|
1.0
|
OD1
|
A:ASP247
|
2.6
|
63.9
|
1.0
|
OE2
|
A:GLU258
|
2.6
|
76.3
|
1.0
|
CD
|
A:GLU258
|
2.8
|
66.8
|
1.0
|
OD2
|
A:ASP249
|
3.1
|
73.0
|
1.0
|
CG
|
A:ASP249
|
3.1
|
73.3
|
1.0
|
CG
|
A:ASN251
|
3.3
|
57.8
|
1.0
|
C
|
A:TYR253
|
3.6
|
48.8
|
1.0
|
ND2
|
A:ASN251
|
3.7
|
60.8
|
1.0
|
OG
|
A:SER255
|
3.7
|
92.1
|
1.0
|
CG
|
A:ASP247
|
3.7
|
63.6
|
1.0
|
CG
|
A:GLU258
|
4.3
|
67.4
|
1.0
|
N
|
A:TYR253
|
4.3
|
57.5
|
1.0
|
N
|
A:SER255
|
4.3
|
74.7
|
1.0
|
CA
|
A:TYR253
|
4.4
|
54.4
|
1.0
|
CA
|
A:ASP247
|
4.5
|
60.1
|
1.0
|
OD2
|
A:ASP247
|
4.5
|
66.5
|
1.0
|
N
|
A:ILE254
|
4.5
|
51.4
|
1.0
|
CB
|
A:ASP249
|
4.6
|
72.1
|
1.0
|
N
|
A:ASN251
|
4.6
|
73.9
|
1.0
|
CB
|
A:ASN251
|
4.6
|
65.9
|
1.0
|
CA
|
A:ILE254
|
4.6
|
54.7
|
1.0
|
CB
|
A:ASP247
|
4.7
|
56.1
|
1.0
|
N
|
A:ASP249
|
4.7
|
65.4
|
1.0
|
CB
|
A:TYR253
|
4.7
|
53.7
|
1.0
|
CB
|
A:SER255
|
4.8
|
83.3
|
1.0
|
N
|
A:LYS248
|
4.8
|
71.7
|
1.0
|
N
|
A:GLY250
|
4.9
|
75.8
|
1.0
|
C
|
A:ILE254
|
4.9
|
64.1
|
1.0
|
C
|
A:ASP247
|
5.0
|
65.6
|
1.0
|
|
Calcium binding site 2 out
of 6 in 8b6q
Go back to
Calcium Binding Sites List in 8b6q
Calcium binding site 2 out
of 6 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca503
b:61.5
occ:1.00
|
OE1
|
A:GLU294
|
2.4
|
71.1
|
1.0
|
OD1
|
A:ASP287
|
2.4
|
62.2
|
1.0
|
OD1
|
A:ASP285
|
2.4
|
70.1
|
1.0
|
O
|
A:GLN289
|
2.5
|
69.7
|
1.0
|
OE2
|
A:GLU294
|
2.6
|
79.2
|
1.0
|
CD
|
A:GLU294
|
2.8
|
73.8
|
1.0
|
OD1
|
A:ASP283
|
2.8
|
76.0
|
1.0
|
CG
|
A:ASP287
|
3.1
|
64.3
|
1.0
|
CG
|
A:ASP285
|
3.1
|
73.4
|
1.0
|
OD2
|
A:ASP285
|
3.3
|
56.8
|
1.0
|
OD2
|
A:ASP287
|
3.3
|
63.9
|
1.0
|
C
|
A:GLN289
|
3.5
|
56.3
|
1.0
|
CG
|
A:ASP283
|
3.7
|
74.6
|
1.0
|
CA
|
A:ASP283
|
3.9
|
82.7
|
1.0
|
CA
|
A:VAL290
|
4.2
|
51.1
|
1.0
|
CB
|
A:ASP283
|
4.2
|
75.7
|
1.0
|
N
|
A:VAL290
|
4.2
|
54.5
|
1.0
|
N
|
A:ILE284
|
4.3
|
89.1
|
1.0
|
CG
|
A:GLU294
|
4.3
|
70.6
|
1.0
|
N
|
A:GLN289
|
4.3
|
63.7
|
1.0
|
ND2
|
A:ASN291
|
4.3
|
68.9
|
1.0
|
N
|
A:ASP285
|
4.4
|
78.7
|
1.0
|
N
|
A:ASN291
|
4.4
|
58.1
|
1.0
|
N
|
A:ASP287
|
4.4
|
64.9
|
1.0
|
CA
|
A:GLN289
|
4.5
|
56.9
|
1.0
|
CB
|
A:ASP287
|
4.5
|
58.0
|
1.0
|
CB
|
A:ASP285
|
4.5
|
68.2
|
1.0
|
C
|
A:ASP283
|
4.6
|
88.5
|
1.0
|
OD2
|
A:ASP283
|
4.7
|
79.5
|
1.0
|
N
|
A:GLY286
|
4.7
|
67.3
|
1.0
|
C
|
A:VAL290
|
4.8
|
57.9
|
1.0
|
CG
|
A:ASN291
|
4.8
|
70.4
|
1.0
|
CA
|
A:ASP285
|
4.9
|
75.8
|
1.0
|
O
|
A:ALA282
|
4.9
|
93.1
|
1.0
|
CA
|
A:ASP287
|
4.9
|
66.3
|
1.0
|
N
|
A:ASP283
|
5.0
|
87.7
|
1.0
|
CB
|
A:GLU294
|
5.0
|
64.7
|
1.0
|
|
Calcium binding site 3 out
of 6 in 8b6q
Go back to
Calcium Binding Sites List in 8b6q
Calcium binding site 3 out
of 6 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca504
b:94.3
occ:1.00
|
OD1
|
A:ASP218
|
2.6
|
123.1
|
1.0
|
OD1
|
A:ASP210
|
2.8
|
112.8
|
1.0
|
CB
|
A:ASP212
|
3.0
|
103.4
|
1.0
|
CB
|
A:ASP214
|
3.1
|
113.0
|
1.0
|
CG
|
A:ASP218
|
3.1
|
115.7
|
1.0
|
O
|
A:THR216
|
3.1
|
106.8
|
1.0
|
OD2
|
A:ASP218
|
3.2
|
117.3
|
1.0
|
OD2
|
A:ASP214
|
3.5
|
112.8
|
1.0
|
OE1
|
A:GLU221
|
3.6
|
117.0
|
1.0
|
OE2
|
A:GLU221
|
3.7
|
105.3
|
1.0
|
N
|
A:ASP214
|
3.7
|
106.9
|
1.0
|
CG
|
A:ASP212
|
3.7
|
111.1
|
1.0
|
C
|
A:THR216
|
3.7
|
103.1
|
1.0
|
CG
|
A:ASP214
|
3.8
|
115.7
|
1.0
|
OG1
|
A:THR216
|
3.8
|
104.6
|
1.0
|
CA
|
A:ASP214
|
3.9
|
109.8
|
1.0
|
CD
|
A:GLU221
|
4.0
|
105.7
|
1.0
|
CG
|
A:ASP210
|
4.1
|
112.4
|
1.0
|
CA
|
A:ASP212
|
4.2
|
101.2
|
1.0
|
N
|
A:THR216
|
4.2
|
105.0
|
1.0
|
OD1
|
A:ASP212
|
4.2
|
112.8
|
1.0
|
N
|
A:ASP218
|
4.3
|
114.8
|
1.0
|
OD2
|
A:ASP212
|
4.3
|
112.8
|
1.0
|
CB
|
A:ASP218
|
4.3
|
101.0
|
1.0
|
N
|
A:ASP212
|
4.4
|
108.9
|
1.0
|
N
|
A:ILE217
|
4.4
|
101.9
|
1.0
|
N
|
A:GLY213
|
4.4
|
111.0
|
1.0
|
CA
|
A:THR216
|
4.5
|
107.2
|
1.0
|
C
|
A:ILE217
|
4.5
|
107.3
|
1.0
|
C
|
A:ASP214
|
4.5
|
110.9
|
1.0
|
C
|
A:ASP212
|
4.6
|
104.7
|
1.0
|
CA
|
A:ILE217
|
4.7
|
99.8
|
1.0
|
N
|
A:GLY215
|
4.7
|
110.7
|
1.0
|
CA
|
A:CA506
|
4.7
|
119.2
|
1.0
|
CB
|
A:THR216
|
4.8
|
104.5
|
1.0
|
CA
|
A:ASP218
|
4.8
|
106.3
|
1.0
|
OD2
|
A:ASP210
|
4.8
|
115.9
|
1.0
|
C
|
A:GLY213
|
4.9
|
105.0
|
1.0
|
CB
|
A:ASP210
|
5.0
|
108.1
|
1.0
|
OD1
|
A:ASP214
|
5.0
|
117.0
|
1.0
|
|
Calcium binding site 4 out
of 6 in 8b6q
Go back to
Calcium Binding Sites List in 8b6q
Calcium binding site 4 out
of 6 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca505
b:132.2
occ:1.00
|
OD1
|
A:ASP176
|
2.5
|
142.5
|
1.0
|
OD1
|
A:ASP178
|
2.5
|
152.1
|
1.0
|
OE1
|
A:GLU185
|
2.7
|
135.1
|
1.0
|
OD1
|
A:ASP174
|
2.8
|
162.6
|
1.0
|
O
|
A:THR180
|
3.1
|
128.7
|
1.0
|
OD2
|
A:ASP178
|
3.2
|
154.8
|
1.0
|
CG
|
A:ASP178
|
3.2
|
156.5
|
1.0
|
CD
|
A:GLU185
|
3.4
|
136.8
|
1.0
|
CA
|
A:ASP174
|
3.4
|
162.5
|
1.0
|
CG
|
A:ASP174
|
3.7
|
162.1
|
1.0
|
CG
|
A:ASP176
|
3.7
|
140.1
|
1.0
|
CB
|
A:ASP174
|
3.8
|
162.9
|
1.0
|
OE2
|
A:GLU185
|
4.0
|
143.5
|
1.0
|
OG1
|
A:THR182
|
4.0
|
104.7
|
1.0
|
N
|
A:LYS175
|
4.0
|
153.1
|
1.0
|
O
|
A:PHE173
|
4.1
|
145.2
|
1.0
|
C
|
A:ASP174
|
4.1
|
163.3
|
1.0
|
CG
|
A:GLU185
|
4.2
|
123.2
|
1.0
|
OD2
|
A:ASP176
|
4.2
|
139.3
|
1.0
|
C
|
A:THR180
|
4.2
|
123.2
|
1.0
|
N
|
A:THR182
|
4.3
|
103.0
|
1.0
|
N
|
A:ASP174
|
4.3
|
157.9
|
1.0
|
N
|
A:ASP176
|
4.4
|
147.9
|
1.0
|
CA
|
A:ILE181
|
4.4
|
103.3
|
1.0
|
CB
|
A:GLU185
|
4.4
|
113.2
|
1.0
|
C
|
A:PHE173
|
4.6
|
140.9
|
1.0
|
N
|
A:ASP178
|
4.6
|
167.5
|
1.0
|
CB
|
A:ASP178
|
4.7
|
158.8
|
1.0
|
N
|
A:GLY177
|
4.8
|
140.3
|
1.0
|
OD2
|
A:ASP174
|
4.8
|
158.5
|
1.0
|
N
|
A:ILE181
|
4.8
|
107.5
|
1.0
|
CB
|
A:ASP176
|
4.9
|
137.9
|
1.0
|
C
|
A:ILE181
|
4.9
|
108.1
|
1.0
|
CB
|
A:THR182
|
4.9
|
109.8
|
1.0
|
|
Calcium binding site 5 out
of 6 in 8b6q
Go back to
Calcium Binding Sites List in 8b6q
Calcium binding site 5 out
of 6 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca506
b:119.2
occ:1.00
|
OD2
|
A:ASP214
|
2.8
|
112.8
|
1.0
|
OD2
|
A:ASP212
|
3.3
|
112.8
|
1.0
|
OD2
|
A:ASP218
|
3.3
|
117.3
|
1.0
|
OD1
|
A:ASP218
|
3.8
|
123.1
|
1.0
|
CG
|
A:ASP218
|
3.8
|
115.7
|
1.0
|
CG
|
A:ASP212
|
4.0
|
111.1
|
1.0
|
CG
|
A:ASP214
|
4.0
|
115.7
|
1.0
|
CG2
|
A:THR180
|
4.1
|
129.6
|
1.0
|
OD1
|
A:ASP212
|
4.4
|
112.8
|
1.0
|
OD1
|
A:ASP214
|
4.7
|
117.0
|
1.0
|
CA
|
A:CA504
|
4.7
|
94.3
|
1.0
|
CB
|
A:ASP212
|
4.9
|
103.4
|
1.0
|
CB
|
A:ASP214
|
5.0
|
113.0
|
1.0
|
|
Calcium binding site 6 out
of 6 in 8b6q
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Calcium Binding Sites List in 8b6q
Calcium binding site 6 out
of 6 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca507
b:123.7
occ:1.00
|
OE1
|
A:GLU208
|
2.5
|
92.9
|
1.0
|
OD2
|
A:ASP341
|
2.8
|
85.2
|
1.0
|
CD
|
A:GLU208
|
3.3
|
96.2
|
1.0
|
OE2
|
A:GLU208
|
3.3
|
86.6
|
1.0
|
O
|
A:LEU329
|
3.4
|
87.6
|
1.0
|
NZ
|
A:LYS337
|
3.6
|
74.9
|
1.0
|
CG
|
A:ASP341
|
3.7
|
84.5
|
1.0
|
CD
|
A:LYS337
|
4.0
|
94.9
|
1.0
|
OD1
|
A:ASP341
|
4.0
|
82.9
|
1.0
|
OE2
|
A:GLU330
|
4.2
|
100.8
|
1.0
|
CE
|
A:LYS337
|
4.3
|
80.1
|
1.0
|
C
|
A:LEU329
|
4.6
|
93.0
|
1.0
|
CG
|
A:GLU208
|
4.7
|
96.5
|
1.0
|
CD
|
A:GLU330
|
5.0
|
95.3
|
1.0
|
CB
|
A:LEU329
|
5.0
|
95.7
|
1.0
|
|
Reference:
M.Tarnawski,
K.Johnsson,
J.Hiblot.
X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 with An Insertion of Calmodulin-M13 Fusion at Position 154-156 That Mimic the Structure of Caprola, An Calcium Gated Protein Labeling Technology To Be Published.
Page generated: Fri Jul 19 07:09:52 2024
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