Calcium in PDB 8cdb: Proulilysin E229A Structure
Protein crystallography data
The structure of Proulilysin E229A Structure, PDB code: 8cdb
was solved by
A.Rodriguez-Banqueri,
U.Eckhard,
F.X.Gomis-Ruth,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
94.72 /
4.50
|
|
Space group
|
C 2 2 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
192.1,
544.4,
185.5,
90,
90,
90
|
|
R / Rfree (%)
|
28.9 /
30.2
|
Other elements in 8cdb:
The structure of Proulilysin E229A Structure also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Calcium atom in the Proulilysin E229A Structure
(pdb code 8cdb). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the
Proulilysin E229A Structure, PDB code: 8cdb:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 14 in 8cdb
Go back to
Calcium Binding Sites List in 8cdb
Calcium binding site 1 out
of 14 in the Proulilysin E229A Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Proulilysin E229A Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca402
b:193.5
occ:1.00
|
OD1
|
A:ASP254
|
2.4
|
172.7
|
1.0
|
|
O
|
A:VAL256
|
2.4
|
176.4
|
1.0
|
|
OG1
|
A:THR259
|
2.4
|
178.9
|
1.0
|
|
O
|
A:THR259
|
2.4
|
177.6
|
1.0
|
|
CG
|
A:ASP254
|
3.2
|
173.1
|
1.0
|
|
OD2
|
A:ASP254
|
3.3
|
172.7
|
1.0
|
|
C
|
A:THR259
|
3.4
|
177.5
|
1.0
|
|
CB
|
A:THR259
|
3.5
|
178.3
|
1.0
|
|
C
|
A:VAL256
|
3.6
|
176.1
|
1.0
|
|
CA
|
A:THR259
|
3.8
|
177.2
|
1.0
|
|
N
|
A:THR259
|
3.8
|
176.2
|
1.0
|
|
CG2
|
A:THR259
|
4.1
|
177.9
|
1.0
|
|
N
|
A:VAL256
|
4.2
|
177.7
|
1.0
|
|
OG
|
A:SER253
|
4.2
|
172.7
|
1.0
|
|
CB
|
A:VAL256
|
4.2
|
177.4
|
1.0
|
|
CA
|
A:VAL256
|
4.2
|
176.9
|
1.0
|
|
N
|
A:ASN261
|
4.3
|
177.1
|
1.0
|
|
CA
|
A:ASN261
|
4.3
|
178.2
|
1.0
|
|
N
|
A:PRO260
|
4.5
|
179.6
|
1.0
|
|
C
|
A:PRO260
|
4.5
|
181.1
|
1.0
|
|
CB
|
A:ASN261
|
4.6
|
177.9
|
1.0
|
|
CB
|
A:ASP254
|
4.6
|
174.3
|
1.0
|
|
N
|
A:ASP257
|
4.6
|
182.2
|
1.0
|
|
O
|
A:ASP257
|
4.7
|
181.1
|
1.0
|
|
C
|
A:ASP257
|
4.7
|
181.2
|
1.0
|
|
OD1
|
A:ASN261
|
4.8
|
179.7
|
1.0
|
|
N
|
A:ASP254
|
4.8
|
174.5
|
1.0
|
|
CA
|
A:ASP257
|
4.8
|
181.5
|
1.0
|
|
O
|
A:PRO260
|
4.8
|
182.2
|
1.0
|
|
O
|
A:ILE239
|
4.9
|
177.9
|
1.0
|
|
CG
|
A:ASN261
|
4.9
|
179.0
|
1.0
|
|
CA
|
A:PRO260
|
4.9
|
179.9
|
1.0
|
|
Calcium binding site 2 out
of 14 in 8cdb
Go back to
Calcium Binding Sites List in 8cdb
Calcium binding site 2 out
of 14 in the Proulilysin E229A Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Proulilysin E229A Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca402
b:183.0
occ:1.00
|
OD1
|
B:ASP254
|
2.4
|
173.0
|
1.0
|
|
OG1
|
B:THR259
|
2.4
|
172.1
|
1.0
|
|
O
|
B:VAL256
|
2.4
|
173.4
|
1.0
|
|
O
|
B:THR259
|
2.4
|
179.6
|
1.0
|
|
CG
|
B:ASP254
|
3.2
|
169.6
|
1.0
|
|
OD2
|
B:ASP254
|
3.2
|
168.0
|
1.0
|
|
C
|
B:THR259
|
3.3
|
177.6
|
1.0
|
|
CB
|
B:THR259
|
3.5
|
171.4
|
1.0
|
|
C
|
B:VAL256
|
3.6
|
174.4
|
1.0
|
|
CA
|
B:THR259
|
3.7
|
175.3
|
1.0
|
|
N
|
B:THR259
|
3.8
|
178.2
|
1.0
|
|
CG2
|
B:THR259
|
4.1
|
170.6
|
1.0
|
|
N
|
B:VAL256
|
4.2
|
172.0
|
1.0
|
|
CB
|
B:VAL256
|
4.2
|
166.9
|
1.0
|
|
OG
|
B:SER253
|
4.2
|
178.3
|
1.0
|
|
CA
|
B:VAL256
|
4.2
|
171.6
|
1.0
|
|
N
|
B:ASN261
|
4.3
|
184.2
|
1.0
|
|
CA
|
B:ASN261
|
4.3
|
183.1
|
1.0
|
|
N
|
B:PRO260
|
4.5
|
181.6
|
1.0
|
|
C
|
B:PRO260
|
4.5
|
182.8
|
1.0
|
|
CB
|
B:ASN261
|
4.6
|
186.9
|
1.0
|
|
N
|
B:ASP257
|
4.6
|
171.6
|
1.0
|
|
CB
|
B:ASP254
|
4.6
|
167.4
|
1.0
|
|
C
|
B:ASP257
|
4.7
|
173.2
|
1.0
|
|
O
|
B:ASP257
|
4.7
|
174.5
|
1.0
|
|
OD1
|
B:ASN261
|
4.8
|
181.9
|
1.0
|
|
N
|
B:ASP254
|
4.8
|
173.2
|
1.0
|
|
O
|
B:PRO260
|
4.8
|
179.3
|
1.0
|
|
CA
|
B:ASP257
|
4.8
|
174.9
|
1.0
|
|
O
|
B:ILE239
|
4.9
|
177.5
|
1.0
|
|
CA
|
B:PRO260
|
4.9
|
184.3
|
1.0
|
|
CG
|
B:ASN261
|
4.9
|
185.7
|
1.0
|
|
CG2
|
B:ILE239
|
5.0
|
173.5
|
1.0
|
|
Calcium binding site 3 out
of 14 in 8cdb
Go back to
Calcium Binding Sites List in 8cdb
Calcium binding site 3 out
of 14 in the Proulilysin E229A Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Proulilysin E229A Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca402
b:188.2
occ:1.00
|
O
|
C:VAL256
|
2.4
|
173.8
|
1.0
|
|
OD1
|
C:ASP254
|
2.4
|
173.8
|
1.0
|
|
OG1
|
C:THR259
|
2.4
|
173.1
|
1.0
|
|
O
|
C:THR259
|
2.4
|
173.7
|
1.0
|
|
CG
|
C:ASP254
|
3.2
|
173.3
|
1.0
|
|
OD2
|
C:ASP254
|
3.3
|
172.5
|
1.0
|
|
C
|
C:THR259
|
3.4
|
173.8
|
1.0
|
|
CB
|
C:THR259
|
3.5
|
172.4
|
1.0
|
|
C
|
C:VAL256
|
3.6
|
172.4
|
1.0
|
|
CA
|
C:THR259
|
3.8
|
172.2
|
1.0
|
|
N
|
C:THR259
|
3.8
|
170.5
|
1.0
|
|
CG2
|
C:THR259
|
4.1
|
170.7
|
1.0
|
|
OG
|
C:SER253
|
4.2
|
176.6
|
1.0
|
|
N
|
C:VAL256
|
4.2
|
173.2
|
1.0
|
|
CA
|
C:VAL256
|
4.2
|
172.2
|
1.0
|
|
CB
|
C:VAL256
|
4.2
|
172.5
|
1.0
|
|
N
|
C:ASN261
|
4.3
|
174.8
|
1.0
|
|
CA
|
C:ASN261
|
4.3
|
175.8
|
1.0
|
|
N
|
C:PRO260
|
4.5
|
174.8
|
1.0
|
|
C
|
C:PRO260
|
4.5
|
177.7
|
1.0
|
|
CB
|
C:ASN261
|
4.6
|
175.6
|
1.0
|
|
O
|
C:ASP257
|
4.6
|
181.0
|
1.0
|
|
CB
|
C:ASP254
|
4.6
|
173.9
|
1.0
|
|
N
|
C:ASP257
|
4.6
|
178.7
|
1.0
|
|
C
|
C:ASP257
|
4.7
|
179.7
|
1.0
|
|
N
|
C:ASP254
|
4.8
|
175.5
|
1.0
|
|
OD1
|
C:ASN261
|
4.8
|
176.2
|
1.0
|
|
CA
|
C:ASP257
|
4.8
|
179.2
|
1.0
|
|
O
|
C:PRO260
|
4.9
|
178.6
|
1.0
|
|
O
|
C:ILE239
|
4.9
|
174.9
|
1.0
|
|
CA
|
C:PRO260
|
4.9
|
176.6
|
1.0
|
|
CG
|
C:ASN261
|
4.9
|
176.1
|
1.0
|
|
Calcium binding site 4 out
of 14 in 8cdb
Go back to
Calcium Binding Sites List in 8cdb
Calcium binding site 4 out
of 14 in the Proulilysin E229A Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Proulilysin E229A Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca402
b:168.8
occ:1.00
|
O
|
D:VAL256
|
2.4
|
162.6
|
1.0
|
|
OG1
|
D:THR259
|
2.4
|
166.8
|
1.0
|
|
OD1
|
D:ASP254
|
2.4
|
161.6
|
1.0
|
|
O
|
D:THR259
|
2.4
|
169.0
|
1.0
|
|
CG
|
D:ASP254
|
3.2
|
160.9
|
1.0
|
|
OD2
|
D:ASP254
|
3.3
|
160.9
|
1.0
|
|
C
|
D:THR259
|
3.3
|
169.6
|
1.0
|
|
CB
|
D:THR259
|
3.5
|
167.2
|
1.0
|
|
C
|
D:VAL256
|
3.6
|
161.9
|
1.0
|
|
CA
|
D:THR259
|
3.7
|
168.5
|
1.0
|
|
N
|
D:THR259
|
3.8
|
167.8
|
1.0
|
|
CG2
|
D:THR259
|
4.1
|
165.8
|
1.0
|
|
N
|
D:VAL256
|
4.2
|
160.3
|
1.0
|
|
CB
|
D:VAL256
|
4.2
|
160.3
|
1.0
|
|
CA
|
D:VAL256
|
4.2
|
160.6
|
1.0
|
|
OG
|
D:SER253
|
4.2
|
157.9
|
1.0
|
|
N
|
D:ASN261
|
4.3
|
165.9
|
1.0
|
|
CA
|
D:ASN261
|
4.3
|
165.2
|
1.0
|
|
N
|
D:PRO260
|
4.5
|
168.4
|
1.0
|
|
C
|
D:PRO260
|
4.5
|
169.2
|
1.0
|
|
CB
|
D:ASN261
|
4.6
|
164.8
|
1.0
|
|
N
|
D:ASP257
|
4.6
|
164.7
|
1.0
|
|
O
|
D:ASP257
|
4.6
|
168.5
|
1.0
|
|
C
|
D:ASP257
|
4.6
|
167.2
|
1.0
|
|
CB
|
D:ASP254
|
4.7
|
160.3
|
1.0
|
|
OD1
|
D:ASN261
|
4.8
|
163.2
|
1.0
|
|
N
|
D:ASP254
|
4.8
|
161.2
|
1.0
|
|
CA
|
D:ASP257
|
4.8
|
166.2
|
1.0
|
|
O
|
D:PRO260
|
4.8
|
169.2
|
1.0
|
|
O
|
D:ILE239
|
4.9
|
159.5
|
1.0
|
|
CG
|
D:ASN261
|
4.9
|
163.8
|
1.0
|
|
CA
|
D:PRO260
|
4.9
|
169.8
|
1.0
|
|
Calcium binding site 5 out
of 14 in 8cdb
Go back to
Calcium Binding Sites List in 8cdb
Calcium binding site 5 out
of 14 in the Proulilysin E229A Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Proulilysin E229A Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca402
b:178.0
occ:1.00
|
OD1
|
E:ASP254
|
2.4
|
159.2
|
1.0
|
|
OG1
|
E:THR259
|
2.4
|
166.9
|
1.0
|
|
O
|
E:VAL256
|
2.4
|
162.1
|
1.0
|
|
O
|
E:THR259
|
2.4
|
168.8
|
1.0
|
|
CG
|
E:ASP254
|
3.2
|
158.5
|
1.0
|
|
OD2
|
E:ASP254
|
3.2
|
158.3
|
1.0
|
|
C
|
E:THR259
|
3.4
|
169.3
|
1.0
|
|
CB
|
E:THR259
|
3.5
|
166.9
|
1.0
|
|
C
|
E:VAL256
|
3.6
|
160.9
|
1.0
|
|
CA
|
E:THR259
|
3.8
|
167.8
|
1.0
|
|
N
|
E:THR259
|
3.8
|
166.4
|
1.0
|
|
CG2
|
E:THR259
|
4.1
|
165.1
|
1.0
|
|
OG
|
E:SER253
|
4.2
|
163.0
|
1.0
|
|
N
|
E:VAL256
|
4.2
|
160.0
|
1.0
|
|
CA
|
E:VAL256
|
4.2
|
159.8
|
1.0
|
|
CB
|
E:VAL256
|
4.3
|
159.8
|
1.0
|
|
N
|
E:ASN261
|
4.3
|
172.0
|
1.0
|
|
CA
|
E:ASN261
|
4.3
|
171.8
|
1.0
|
|
N
|
E:PRO260
|
4.5
|
168.2
|
1.0
|
|
C
|
E:PRO260
|
4.5
|
169.9
|
1.0
|
|
CB
|
E:ASN261
|
4.5
|
171.3
|
1.0
|
|
CB
|
E:ASP254
|
4.6
|
158.1
|
1.0
|
|
O
|
E:ASP257
|
4.6
|
171.7
|
1.0
|
|
N
|
E:ASP257
|
4.6
|
167.9
|
1.0
|
|
C
|
E:ASP257
|
4.7
|
170.2
|
1.0
|
|
OD1
|
E:ASN261
|
4.7
|
170.2
|
1.0
|
|
N
|
E:ASP254
|
4.8
|
159.2
|
1.0
|
|
CA
|
E:ASP257
|
4.8
|
169.1
|
1.0
|
|
O
|
E:PRO260
|
4.9
|
170.3
|
1.0
|
|
CG
|
E:ASN261
|
4.9
|
170.7
|
1.0
|
|
O
|
E:ILE239
|
4.9
|
165.2
|
1.0
|
|
CA
|
E:PRO260
|
4.9
|
169.9
|
1.0
|
|
Calcium binding site 6 out
of 14 in 8cdb
Go back to
Calcium Binding Sites List in 8cdb
Calcium binding site 6 out
of 14 in the Proulilysin E229A Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Proulilysin E229A Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca402
b:172.2
occ:1.00
|
OD1
|
F:ASP254
|
2.4
|
154.0
|
1.0
|
|
O
|
F:THR259
|
2.4
|
158.7
|
1.0
|
|
OG1
|
F:THR259
|
2.4
|
159.1
|
1.0
|
|
O
|
F:VAL256
|
2.4
|
155.2
|
1.0
|
|
CG
|
F:ASP254
|
3.2
|
154.1
|
1.0
|
|
OD2
|
F:ASP254
|
3.3
|
153.8
|
1.0
|
|
C
|
F:THR259
|
3.4
|
158.8
|
1.0
|
|
CB
|
F:THR259
|
3.6
|
158.8
|
1.0
|
|
C
|
F:VAL256
|
3.6
|
155.1
|
1.0
|
|
CA
|
F:THR259
|
3.8
|
158.4
|
1.0
|
|
N
|
F:THR259
|
3.8
|
158.0
|
1.0
|
|
CG2
|
F:THR259
|
4.2
|
158.5
|
1.0
|
|
OG
|
F:SER253
|
4.2
|
153.0
|
1.0
|
|
N
|
F:VAL256
|
4.2
|
155.9
|
1.0
|
|
CA
|
F:VAL256
|
4.3
|
155.5
|
1.0
|
|
CB
|
F:VAL256
|
4.3
|
155.4
|
1.0
|
|
N
|
F:ASN261
|
4.3
|
162.7
|
1.0
|
|
CA
|
F:ASN261
|
4.3
|
163.3
|
1.0
|
|
C
|
F:PRO260
|
4.5
|
159.2
|
1.0
|
|
N
|
F:PRO260
|
4.5
|
158.2
|
1.0
|
|
CB
|
F:ASN261
|
4.5
|
163.2
|
1.0
|
|
O
|
F:ASP257
|
4.6
|
160.8
|
1.0
|
|
N
|
F:ASP257
|
4.7
|
161.2
|
1.0
|
|
C
|
F:ASP257
|
4.7
|
160.8
|
1.0
|
|
CB
|
F:ASP254
|
4.7
|
154.8
|
1.0
|
|
OD1
|
F:ASN261
|
4.7
|
164.1
|
1.0
|
|
N
|
F:ASP254
|
4.8
|
155.3
|
1.0
|
|
O
|
F:PRO260
|
4.8
|
159.8
|
1.0
|
|
CA
|
F:ASP257
|
4.8
|
161.0
|
1.0
|
|
CG
|
F:ASN261
|
4.9
|
163.8
|
1.0
|
|
CA
|
F:PRO260
|
4.9
|
158.6
|
1.0
|
|
O
|
F:ILE239
|
4.9
|
157.3
|
1.0
|
|
Calcium binding site 7 out
of 14 in 8cdb
Go back to
Calcium Binding Sites List in 8cdb
Calcium binding site 7 out
of 14 in the Proulilysin E229A Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Proulilysin E229A Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca402
b:162.8
occ:1.00
|
OD1
|
G:ASP254
|
2.4
|
160.9
|
1.0
|
|
O
|
G:THR259
|
2.4
|
164.4
|
1.0
|
|
OG1
|
G:THR259
|
2.4
|
160.6
|
1.0
|
|
O
|
G:VAL256
|
2.4
|
162.3
|
1.0
|
|
CG
|
G:ASP254
|
3.2
|
159.1
|
1.0
|
|
OD2
|
G:ASP254
|
3.3
|
158.2
|
1.0
|
|
C
|
G:THR259
|
3.4
|
163.8
|
1.0
|
|
CB
|
G:THR259
|
3.6
|
160.2
|
1.0
|
|
C
|
G:VAL256
|
3.6
|
161.8
|
1.0
|
|
CA
|
G:THR259
|
3.8
|
162.0
|
1.0
|
|
N
|
G:THR259
|
3.9
|
162.3
|
1.0
|
|
OG
|
G:SER253
|
4.1
|
165.4
|
1.0
|
|
CG2
|
G:THR259
|
4.2
|
158.7
|
1.0
|
|
N
|
G:VAL256
|
4.2
|
160.5
|
1.0
|
|
N
|
G:ASN261
|
4.2
|
171.4
|
1.0
|
|
CA
|
G:VAL256
|
4.3
|
160.0
|
1.0
|
|
CB
|
G:VAL256
|
4.3
|
158.4
|
1.0
|
|
CA
|
G:ASN261
|
4.3
|
171.3
|
1.0
|
|
C
|
G:PRO260
|
4.5
|
166.7
|
1.0
|
|
N
|
G:PRO260
|
4.5
|
164.9
|
1.0
|
|
CB
|
G:ASN261
|
4.5
|
172.7
|
1.0
|
|
O
|
G:ASP257
|
4.6
|
166.3
|
1.0
|
|
N
|
G:ASP257
|
4.6
|
162.9
|
1.0
|
|
C
|
G:ASP257
|
4.7
|
164.9
|
1.0
|
|
CB
|
G:ASP254
|
4.7
|
158.2
|
1.0
|
|
OD1
|
G:ASN261
|
4.7
|
170.6
|
1.0
|
|
N
|
G:ASP254
|
4.8
|
161.4
|
1.0
|
|
O
|
G:PRO260
|
4.8
|
165.6
|
1.0
|
|
CA
|
G:ASP257
|
4.8
|
164.9
|
1.0
|
|
CG
|
G:ASN261
|
4.9
|
172.3
|
1.0
|
|
CA
|
G:PRO260
|
4.9
|
166.9
|
1.0
|
|
O
|
G:ILE239
|
4.9
|
162.5
|
1.0
|
|
Calcium binding site 8 out
of 14 in 8cdb
Go back to
Calcium Binding Sites List in 8cdb
Calcium binding site 8 out
of 14 in the Proulilysin E229A Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Proulilysin E229A Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca402
b:159.8
occ:1.00
|
OG1
|
H:THR259
|
2.4
|
150.7
|
1.0
|
|
O
|
H:VAL256
|
2.4
|
151.9
|
1.0
|
|
OD1
|
H:ASP254
|
2.4
|
149.0
|
1.0
|
|
O
|
H:THR259
|
2.4
|
154.7
|
1.0
|
|
CG
|
H:ASP254
|
3.2
|
147.3
|
1.0
|
|
OD2
|
H:ASP254
|
3.2
|
146.8
|
1.0
|
|
C
|
H:THR259
|
3.3
|
154.2
|
1.0
|
|
CB
|
H:THR259
|
3.5
|
150.6
|
1.0
|
|
C
|
H:VAL256
|
3.6
|
151.6
|
1.0
|
|
CA
|
H:THR259
|
3.7
|
152.7
|
1.0
|
|
N
|
H:THR259
|
3.8
|
153.2
|
1.0
|
|
CG2
|
H:THR259
|
4.1
|
149.4
|
1.0
|
|
CB
|
H:VAL256
|
4.2
|
148.1
|
1.0
|
|
N
|
H:VAL256
|
4.2
|
149.8
|
1.0
|
|
CA
|
H:VAL256
|
4.2
|
149.8
|
1.0
|
|
OG
|
H:SER253
|
4.3
|
155.0
|
1.0
|
|
N
|
H:ASN261
|
4.3
|
160.7
|
1.0
|
|
CA
|
H:ASN261
|
4.3
|
159.8
|
1.0
|
|
N
|
H:PRO260
|
4.5
|
156.5
|
1.0
|
|
C
|
H:PRO260
|
4.5
|
157.5
|
1.0
|
|
O
|
H:ASP257
|
4.6
|
156.9
|
1.0
|
|
CB
|
H:ASN261
|
4.6
|
161.0
|
1.0
|
|
C
|
H:ASP257
|
4.6
|
155.6
|
1.0
|
|
N
|
H:ASP257
|
4.6
|
153.5
|
1.0
|
|
CB
|
H:ASP254
|
4.6
|
146.0
|
1.0
|
|
OD1
|
H:ASN261
|
4.8
|
158.0
|
1.0
|
|
N
|
H:ASP254
|
4.8
|
148.4
|
1.0
|
|
CA
|
H:ASP257
|
4.8
|
155.6
|
1.0
|
|
O
|
H:PRO260
|
4.8
|
156.1
|
1.0
|
|
O
|
H:ILE239
|
4.9
|
148.9
|
1.0
|
|
CA
|
H:PRO260
|
4.9
|
158.3
|
1.0
|
|
CG
|
H:ASN261
|
4.9
|
159.9
|
1.0
|
|
Calcium binding site 9 out
of 14 in 8cdb
Go back to
Calcium Binding Sites List in 8cdb
Calcium binding site 9 out
of 14 in the Proulilysin E229A Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Proulilysin E229A Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca402
b:171.4
occ:1.00
|
OG1
|
I:THR259
|
2.4
|
157.5
|
1.0
|
|
O
|
I:THR259
|
2.4
|
159.2
|
1.0
|
|
OD1
|
I:ASP254
|
2.4
|
156.8
|
1.0
|
|
O
|
I:VAL256
|
2.4
|
157.5
|
1.0
|
|
CG
|
I:ASP254
|
3.2
|
155.9
|
1.0
|
|
OD2
|
I:ASP254
|
3.3
|
155.0
|
1.0
|
|
C
|
I:THR259
|
3.3
|
158.4
|
1.0
|
|
CB
|
I:THR259
|
3.6
|
156.7
|
1.0
|
|
C
|
I:VAL256
|
3.6
|
157.7
|
1.0
|
|
CA
|
I:THR259
|
3.8
|
157.3
|
1.0
|
|
N
|
I:THR259
|
3.8
|
157.6
|
1.0
|
|
CG2
|
I:THR259
|
4.2
|
156.1
|
1.0
|
|
OG
|
I:SER253
|
4.2
|
155.4
|
1.0
|
|
N
|
I:VAL256
|
4.2
|
158.1
|
1.0
|
|
CA
|
I:VAL256
|
4.3
|
157.3
|
1.0
|
|
CB
|
I:VAL256
|
4.3
|
155.9
|
1.0
|
|
N
|
I:ASN261
|
4.3
|
162.5
|
1.0
|
|
CA
|
I:ASN261
|
4.3
|
163.0
|
1.0
|
|
N
|
I:PRO260
|
4.5
|
163.9
|
1.0
|
|
C
|
I:PRO260
|
4.5
|
165.8
|
1.0
|
|
CB
|
I:ASN261
|
4.6
|
164.2
|
1.0
|
|
O
|
I:ASP257
|
4.6
|
160.8
|
1.0
|
|
N
|
I:ASP257
|
4.6
|
160.4
|
1.0
|
|
C
|
I:ASP257
|
4.7
|
160.3
|
1.0
|
|
CB
|
I:ASP254
|
4.7
|
156.2
|
1.0
|
|
OD1
|
I:ASN261
|
4.7
|
163.6
|
1.0
|
|
N
|
I:ASP254
|
4.8
|
158.4
|
1.0
|
|
CA
|
I:ASP257
|
4.8
|
161.2
|
1.0
|
|
O
|
I:PRO260
|
4.8
|
165.3
|
1.0
|
|
CG
|
I:ASN261
|
4.9
|
164.5
|
1.0
|
|
CA
|
I:PRO260
|
4.9
|
165.3
|
1.0
|
|
O
|
I:ILE239
|
4.9
|
155.3
|
1.0
|
|
Calcium binding site 10 out
of 14 in 8cdb
Go back to
Calcium Binding Sites List in 8cdb
Calcium binding site 10 out
of 14 in the Proulilysin E229A Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Proulilysin E229A Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca402
b:163.0
occ:1.00
|
O
|
J:VAL256
|
2.4
|
150.1
|
1.0
|
|
OG1
|
J:THR259
|
2.4
|
155.5
|
1.0
|
|
OD1
|
J:ASP254
|
2.4
|
147.3
|
1.0
|
|
O
|
J:THR259
|
2.4
|
157.2
|
1.0
|
|
CG
|
J:ASP254
|
3.2
|
146.5
|
1.0
|
|
OD2
|
J:ASP254
|
3.3
|
145.5
|
1.0
|
|
C
|
J:THR259
|
3.3
|
156.2
|
1.0
|
|
CB
|
J:THR259
|
3.5
|
154.6
|
1.0
|
|
C
|
J:VAL256
|
3.6
|
150.6
|
1.0
|
|
CA
|
J:THR259
|
3.8
|
155.2
|
1.0
|
|
N
|
J:THR259
|
3.8
|
156.1
|
1.0
|
|
CG2
|
J:THR259
|
4.1
|
154.6
|
1.0
|
|
N
|
J:VAL256
|
4.2
|
151.3
|
1.0
|
|
CA
|
J:VAL256
|
4.2
|
150.5
|
1.0
|
|
CB
|
J:VAL256
|
4.2
|
148.9
|
1.0
|
|
OG
|
J:SER253
|
4.2
|
151.9
|
1.0
|
|
N
|
J:ASN261
|
4.3
|
157.1
|
1.0
|
|
CA
|
J:ASN261
|
4.3
|
157.6
|
1.0
|
|
N
|
J:PRO260
|
4.5
|
159.5
|
1.0
|
|
C
|
J:PRO260
|
4.5
|
161.0
|
1.0
|
|
CB
|
J:ASN261
|
4.6
|
159.2
|
1.0
|
|
O
|
J:ASP257
|
4.6
|
156.5
|
1.0
|
|
C
|
J:ASP257
|
4.6
|
156.3
|
1.0
|
|
N
|
J:ASP257
|
4.6
|
157.0
|
1.0
|
|
CB
|
J:ASP254
|
4.6
|
147.0
|
1.0
|
|
OD1
|
J:ASN261
|
4.8
|
158.7
|
1.0
|
|
N
|
J:ASP254
|
4.8
|
149.1
|
1.0
|
|
CA
|
J:ASP257
|
4.8
|
157.6
|
1.0
|
|
O
|
J:PRO260
|
4.8
|
160.2
|
1.0
|
|
O
|
J:ILE239
|
4.9
|
152.7
|
1.0
|
|
CG
|
J:ASN261
|
4.9
|
159.6
|
1.0
|
|
CA
|
J:PRO260
|
4.9
|
160.7
|
1.0
|
|
Reference:
A.Rodriguez-Banqueri,
M.Moliner-Culubret,
S.R.Mendes,
T.Guevara,
U.Eckhard,
F.X.Gomis-Ruth.
Structural Insights Into Latency of the Metallopeptidase Ulilysin (Lysarginase) and Its Unexpected Inhibition By A Sulfonyl-Fluoride Inhibitor of Serine Peptidases. Dalton Trans V. 52 3610 2023.
ISSN: ESSN 1477-9234
PubMed: 36857690
DOI: 10.1039/D3DT00458A
Page generated: Tue Apr 11 12:42:20 2023
|
