Atomistry » Calcium » PDB 8clf-8db8 » 8d37
Atomistry »
  Calcium »
    PDB 8clf-8db8 »
      8d37 »

Calcium in PDB 8d37: Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Replication Conformer

Enzymatic activity of Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Replication Conformer

All present enzymatic activity of Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Replication Conformer:
2.7.7.7;

Calcium Binding Sites:

The binding sites of Calcium atom in the Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Replication Conformer (pdb code 8d37). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Replication Conformer, PDB code: 8d37:

Calcium binding site 1 out of 1 in 8d37

Go back to Calcium Binding Sites List in 8d37
Calcium binding site 1 out of 1 in the Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Replication Conformer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Replication Conformer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1301

b:27.8
occ:1.00
O2G A:DCP1302 2.2 46.2 1.0
O1B A:DCP1302 2.2 45.6 1.0
OD1 A:ASP890 2.3 59.6 1.0
OD2 A:ASP890 2.3 47.5 1.0
O A:VAL891 2.4 52.3 1.0
O2A A:DCP1302 2.4 51.6 1.0
OD2 A:ASP1135 2.5 68.6 1.0
CG A:ASP890 2.5 47.6 1.0
PB A:DCP1302 3.2 51.0 1.0
PA A:DCP1302 3.4 39.0 1.0
C A:VAL891 3.5 47.8 1.0
PG A:DCP1302 3.6 48.8 1.0
O3A A:DCP1302 3.6 41.7 1.0
CG A:ASP1135 3.6 65.0 1.0
O3B A:DCP1302 3.7 52.2 1.0
CB A:ASP890 3.9 39.6 1.0
N A:VAL891 3.9 43.6 1.0
OD1 A:ASP1135 4.2 67.9 1.0
CA A:VAL891 4.3 41.1 1.0
C A:ASP890 4.4 48.9 1.0
O5' A:DCP1302 4.4 46.4 1.0
O1G A:DCP1302 4.4 43.6 1.0
C5' A:DCP1302 4.5 47.1 1.0
N A:ASP892 4.5 42.3 1.0
CB A:ASP1135 4.6 57.7 1.0
O3G A:DCP1302 4.6 53.7 1.0
O2B A:DCP1302 4.6 51.8 1.0
O1A A:DCP1302 4.6 52.9 1.0
CA A:ASP892 4.7 41.9 1.0
CA A:ASP890 4.7 44.2 1.0
N A:SER893 4.8 45.1 1.0
CB A:VAL891 4.8 50.2 1.0

Reference:

J.Park, G.K.Herrmann, P.G.Mitchell, M.B.Sherman, Y.W.Yin. Pol-Gamma Coordinates Dna Synthesis and Proofreading to Ensure Mitochondrial Genome Integrity Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-00980-2
Page generated: Fri Jul 19 07:50:46 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy