Calcium in PDB 8d40: Crystal Structure of Human CELSR1 EC1-4
Protein crystallography data
The structure of Crystal Structure of Human CELSR1 EC1-4, PDB code: 8d40
was solved by
E.Tamilselvan,
M.Sotomayor,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
47.24 /
3.55
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
305.653,
90.356,
94.949,
90,
96.17,
90
|
|
R / Rfree (%)
|
21.6 /
25.2
|
Other elements in 8d40:
The structure of Crystal Structure of Human CELSR1 EC1-4 also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
15;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Human CELSR1 EC1-4
(pdb code 8d40). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 15 binding sites of Calcium where determined in the
Crystal Structure of Human CELSR1 EC1-4, PDB code: 8d40:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 15 in 8d40
Go back to
Calcium Binding Sites List in 8d40
Calcium binding site 1 out
of 15 in the Crystal Structure of Human CELSR1 EC1-4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Human CELSR1 EC1-4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca502
b:125.9
occ:1.00
|
OD1
|
A:ASP110
|
1.8
|
137.9
|
1.0
|
|
OE2
|
A:GLU21
|
2.1
|
166.2
|
1.0
|
|
OE1
|
A:GLU21
|
2.2
|
141.5
|
1.0
|
|
OE2
|
A:GLU79
|
2.3
|
115.0
|
1.0
|
|
OD1
|
A:ASP146
|
2.4
|
118.0
|
1.0
|
|
CD
|
A:GLU21
|
2.4
|
142.6
|
1.0
|
|
OD1
|
A:ASP113
|
2.7
|
153.1
|
1.0
|
|
CG
|
A:ASP110
|
3.0
|
126.1
|
1.0
|
|
CG
|
A:ASP113
|
3.1
|
136.1
|
1.0
|
|
CD
|
A:GLU79
|
3.2
|
119.3
|
1.0
|
|
OD2
|
A:ASP113
|
3.3
|
133.5
|
1.0
|
|
OE1
|
A:GLU79
|
3.4
|
124.9
|
1.0
|
|
CG
|
A:ASP146
|
3.6
|
117.8
|
1.0
|
|
N
|
A:THR111
|
3.7
|
123.8
|
1.0
|
|
NH2
|
A:ARG78
|
3.8
|
144.2
|
1.0
|
|
OD2
|
A:ASP110
|
3.8
|
134.0
|
1.0
|
|
N
|
A:ASP113
|
3.9
|
117.8
|
1.0
|
|
CG
|
A:GLU21
|
3.9
|
131.8
|
1.0
|
|
CB
|
A:ASP110
|
4.1
|
117.5
|
1.0
|
|
CB
|
A:ASP113
|
4.1
|
128.8
|
1.0
|
|
N
|
A:ASN112
|
4.1
|
128.9
|
1.0
|
|
CA
|
A:ASP110
|
4.2
|
119.8
|
1.0
|
|
OG1
|
A:THR111
|
4.2
|
138.9
|
1.0
|
|
OD2
|
A:ASP146
|
4.3
|
116.8
|
1.0
|
|
NA
|
A:NA501
|
4.4
|
111.7
|
1.0
|
|
C
|
A:ASP110
|
4.5
|
120.4
|
1.0
|
|
CG
|
A:GLU79
|
4.5
|
122.3
|
1.0
|
|
CB
|
A:ASP146
|
4.5
|
117.1
|
1.0
|
|
C
|
A:THR111
|
4.6
|
142.4
|
1.0
|
|
NE
|
A:ARG78
|
4.6
|
146.0
|
1.0
|
|
CA
|
A:ASP113
|
4.6
|
127.2
|
1.0
|
|
CZ
|
A:ARG78
|
4.6
|
142.4
|
1.0
|
|
CA
|
A:THR111
|
4.6
|
132.2
|
1.0
|
|
CA
|
A:ASN112
|
4.7
|
121.9
|
1.0
|
|
CB
|
A:GLU21
|
4.7
|
139.8
|
1.0
|
|
CA
|
A:ASP146
|
4.7
|
115.4
|
1.0
|
|
C
|
A:ASN112
|
4.8
|
118.4
|
1.0
|
|
O
|
A:ARG145
|
4.9
|
136.7
|
1.0
|
|
Calcium binding site 2 out
of 15 in 8d40
Go back to
Calcium Binding Sites List in 8d40
Calcium binding site 2 out
of 15 in the Crystal Structure of Human CELSR1 EC1-4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Human CELSR1 EC1-4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca503
b:121.8
occ:1.00
|
OD1
|
A:ASN112
|
1.8
|
152.9
|
1.0
|
|
OD2
|
A:ASP144
|
2.1
|
137.0
|
1.0
|
|
O
|
A:ASN150
|
2.3
|
124.5
|
1.0
|
|
OD2
|
A:ASP146
|
2.4
|
116.8
|
1.0
|
|
O
|
A:HIS114
|
2.7
|
117.0
|
1.0
|
|
OD2
|
A:ASP196
|
2.7
|
132.5
|
1.0
|
|
CG
|
A:ASP144
|
2.7
|
129.3
|
1.0
|
|
OD1
|
A:ASP144
|
2.9
|
141.2
|
1.0
|
|
CG
|
A:ASN112
|
3.0
|
137.7
|
1.0
|
|
CG
|
A:ASP196
|
3.1
|
135.7
|
1.0
|
|
CG
|
A:ASP146
|
3.2
|
117.8
|
1.0
|
|
OD1
|
A:ASP196
|
3.2
|
142.4
|
1.0
|
|
CB
|
A:ASP146
|
3.3
|
117.1
|
1.0
|
|
C
|
A:ASN150
|
3.4
|
120.3
|
1.0
|
|
CB
|
A:ASN150
|
3.6
|
117.5
|
1.0
|
|
C
|
A:HIS114
|
3.8
|
124.6
|
1.0
|
|
CA
|
A:ASN112
|
3.9
|
121.9
|
1.0
|
|
ND2
|
A:ASN112
|
3.9
|
141.8
|
1.0
|
|
CA
|
A:ASN150
|
4.0
|
118.6
|
1.0
|
|
CB
|
A:ASN112
|
4.0
|
126.5
|
1.0
|
|
CB
|
A:ASP144
|
4.0
|
123.9
|
1.0
|
|
CB
|
A:ASP196
|
4.2
|
126.8
|
1.0
|
|
OD1
|
A:ASP146
|
4.3
|
118.0
|
1.0
|
|
C
|
A:ASN112
|
4.4
|
118.4
|
1.0
|
|
N
|
A:HIS114
|
4.5
|
129.7
|
1.0
|
|
N
|
A:ALA151
|
4.6
|
119.6
|
1.0
|
|
CA
|
A:HIS114
|
4.6
|
123.1
|
1.0
|
|
N
|
A:SER115
|
4.7
|
122.8
|
1.0
|
|
CB
|
A:HIS114
|
4.8
|
120.0
|
1.0
|
|
CA
|
A:ASP146
|
4.8
|
115.4
|
1.0
|
|
O
|
A:ASN112
|
4.8
|
113.3
|
1.0
|
|
CA
|
A:SER115
|
4.9
|
122.8
|
1.0
|
|
N
|
A:ASP113
|
4.9
|
117.8
|
1.0
|
|
CB
|
A:LEU204
|
4.9
|
128.7
|
1.0
|
|
CG
|
A:ASN150
|
4.9
|
115.8
|
1.0
|
|
CD1
|
A:LEU204
|
5.0
|
128.0
|
1.0
|
|
CA
|
A:ALA151
|
5.0
|
117.2
|
1.0
|
|
Calcium binding site 3 out
of 15 in 8d40
Go back to
Calcium Binding Sites List in 8d40
Calcium binding site 3 out
of 15 in the Crystal Structure of Human CELSR1 EC1-4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Human CELSR1 EC1-4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca504
b:135.2
occ:1.00
|
OD2
|
A:ASP219
|
1.8
|
128.5
|
1.0
|
|
OE1
|
A:GLU183
|
2.3
|
131.4
|
1.0
|
|
OE1
|
A:GLU129
|
2.9
|
134.2
|
1.0
|
|
OD2
|
A:ASP181
|
2.9
|
156.4
|
1.0
|
|
CG
|
A:ASP219
|
2.9
|
129.3
|
1.0
|
|
CG
|
A:ASP181
|
3.3
|
146.4
|
1.0
|
|
OD1
|
A:ASP219
|
3.5
|
134.6
|
1.0
|
|
OD1
|
A:ASN130
|
3.5
|
115.5
|
1.0
|
|
CD
|
A:GLU183
|
3.6
|
130.0
|
1.0
|
|
CD
|
A:GLU129
|
3.6
|
129.9
|
1.0
|
|
OD1
|
A:ASP181
|
3.7
|
143.3
|
1.0
|
|
ND2
|
A:ASN130
|
3.7
|
129.5
|
1.0
|
|
CB
|
A:ASP219
|
4.0
|
128.7
|
1.0
|
|
OE2
|
A:GLU129
|
4.0
|
132.6
|
1.0
|
|
CG
|
A:ASN130
|
4.0
|
126.0
|
1.0
|
|
ND2
|
A:ASN220
|
4.2
|
134.0
|
1.0
|
|
CB
|
A:ASP181
|
4.2
|
143.9
|
1.0
|
|
OE2
|
A:GLU183
|
4.2
|
117.5
|
1.0
|
|
CA
|
A:ASP181
|
4.3
|
142.3
|
1.0
|
|
CG
|
A:GLU129
|
4.6
|
127.6
|
1.0
|
|
CG
|
A:GLU183
|
4.6
|
136.3
|
1.0
|
|
CA
|
A:CA505
|
4.7
|
121.6
|
1.0
|
|
N
|
A:ARG182
|
4.8
|
135.4
|
1.0
|
|
C
|
A:ASP181
|
4.8
|
140.7
|
1.0
|
|
CB
|
A:GLU183
|
4.8
|
139.5
|
1.0
|
|
N
|
A:GLU183
|
4.9
|
135.9
|
1.0
|
|
Calcium binding site 4 out
of 15 in 8d40
Go back to
Calcium Binding Sites List in 8d40
Calcium binding site 4 out
of 15 in the Crystal Structure of Human CELSR1 EC1-4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Human CELSR1 EC1-4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca505
b:121.6
occ:1.00
|
OE2
|
A:GLU183
|
1.8
|
117.5
|
1.0
|
|
OD1
|
A:ASP216
|
2.3
|
126.2
|
1.0
|
|
OE2
|
A:GLU129
|
2.4
|
132.6
|
1.0
|
|
O
|
A:GLU217
|
2.4
|
123.5
|
1.0
|
|
OD1
|
A:ASP252
|
2.5
|
135.8
|
1.0
|
|
OD1
|
A:ASP219
|
2.6
|
134.6
|
1.0
|
|
CD
|
A:GLU183
|
2.9
|
130.0
|
1.0
|
|
CG
|
A:ASP252
|
3.4
|
128.9
|
1.0
|
|
N
|
A:GLU217
|
3.4
|
129.3
|
1.0
|
|
CG
|
A:ASP219
|
3.4
|
129.3
|
1.0
|
|
OE1
|
A:GLU183
|
3.4
|
131.4
|
1.0
|
|
CG
|
A:ASP216
|
3.4
|
132.5
|
1.0
|
|
CD
|
A:GLU129
|
3.4
|
129.9
|
1.0
|
|
C
|
A:GLU217
|
3.5
|
129.1
|
1.0
|
|
OD2
|
A:ASP219
|
3.7
|
128.5
|
1.0
|
|
OE1
|
A:GLU129
|
3.8
|
134.2
|
1.0
|
|
NH1
|
A:ARG182
|
3.9
|
153.7
|
1.0
|
|
CB
|
A:ASP252
|
4.0
|
124.1
|
1.0
|
|
CA
|
A:GLU217
|
4.1
|
131.5
|
1.0
|
|
NE
|
A:ARG182
|
4.1
|
148.1
|
1.0
|
|
CG
|
A:GLU183
|
4.1
|
136.3
|
1.0
|
|
OD2
|
A:ASP216
|
4.2
|
140.5
|
1.0
|
|
OD2
|
A:ASP252
|
4.2
|
134.6
|
1.0
|
|
CA
|
A:ASP216
|
4.3
|
134.7
|
1.0
|
|
CA
|
A:ASP252
|
4.3
|
124.4
|
1.0
|
|
C
|
A:ASP216
|
4.3
|
133.2
|
1.0
|
|
CB
|
A:ASP216
|
4.4
|
133.4
|
1.0
|
|
CZ
|
A:ARG182
|
4.5
|
154.8
|
1.0
|
|
ND2
|
A:ASN220
|
4.5
|
134.0
|
1.0
|
|
N
|
A:ASP219
|
4.6
|
125.8
|
1.0
|
|
CB
|
A:ASP219
|
4.6
|
128.7
|
1.0
|
|
N
|
A:ASN218
|
4.6
|
130.3
|
1.0
|
|
CA
|
A:CA504
|
4.7
|
135.2
|
1.0
|
|
CG
|
A:GLU129
|
4.8
|
127.6
|
1.0
|
|
CB
|
A:GLU217
|
4.8
|
139.1
|
1.0
|
|
CB
|
A:ARG182
|
4.9
|
138.8
|
1.0
|
|
Calcium binding site 5 out
of 15 in 8d40
Go back to
Calcium Binding Sites List in 8d40
Calcium binding site 5 out
of 15 in the Crystal Structure of Human CELSR1 EC1-4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Human CELSR1 EC1-4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca506
b:122.5
occ:1.00
|
OD2
|
A:ASP303
|
1.8
|
119.4
|
1.0
|
|
OD2
|
A:ASP250
|
2.2
|
125.1
|
1.0
|
|
OD2
|
A:ASP252
|
2.2
|
134.6
|
1.0
|
|
O
|
A:ASN220
|
2.3
|
112.2
|
1.0
|
|
OD1
|
A:ASN218
|
2.6
|
151.5
|
1.0
|
|
O
|
A:ASN256
|
2.6
|
91.9
|
1.0
|
|
CG
|
A:ASP250
|
2.8
|
121.8
|
1.0
|
|
OD1
|
A:ASP250
|
2.8
|
119.3
|
1.0
|
|
CG
|
A:ASP303
|
3.0
|
116.6
|
1.0
|
|
CG
|
A:ASP252
|
3.2
|
128.9
|
1.0
|
|
CG
|
A:ASN218
|
3.5
|
143.8
|
1.0
|
|
CB
|
A:ASP252
|
3.5
|
124.1
|
1.0
|
|
C
|
A:ASN220
|
3.5
|
121.0
|
1.0
|
|
OD1
|
A:ASP303
|
3.7
|
137.1
|
1.0
|
|
C
|
A:ASN256
|
3.7
|
104.8
|
1.0
|
|
CB
|
A:ASN256
|
4.0
|
119.4
|
1.0
|
|
ND2
|
A:ASN218
|
4.0
|
153.4
|
1.0
|
|
CB
|
A:ASP303
|
4.1
|
102.1
|
1.0
|
|
N
|
A:ASN220
|
4.1
|
127.2
|
1.0
|
|
CA
|
A:ASN220
|
4.2
|
127.0
|
1.0
|
|
CB
|
A:ASP250
|
4.3
|
121.3
|
1.0
|
|
CA
|
A:ASN256
|
4.3
|
111.6
|
1.0
|
|
CA
|
A:ASN218
|
4.3
|
126.6
|
1.0
|
|
OD1
|
A:ASP252
|
4.3
|
135.8
|
1.0
|
|
CB
|
A:ASN220
|
4.5
|
131.4
|
1.0
|
|
N
|
A:ASP219
|
4.5
|
125.8
|
1.0
|
|
CB
|
A:ASN218
|
4.5
|
135.0
|
1.0
|
|
N
|
A:TYR221
|
4.6
|
112.6
|
1.0
|
|
CA
|
A:ASP252
|
4.7
|
124.4
|
1.0
|
|
N
|
A:ALA257
|
4.8
|
108.2
|
1.0
|
|
C
|
A:ASN218
|
4.8
|
125.9
|
1.0
|
|
N
|
A:ASP252
|
4.8
|
123.7
|
1.0
|
|
CA
|
A:TYR221
|
4.8
|
107.4
|
1.0
|
|
CD1
|
A:LEU309
|
4.9
|
118.2
|
1.0
|
|
C
|
A:TYR221
|
4.9
|
107.3
|
1.0
|
|
Calcium binding site 6 out
of 15 in 8d40
Go back to
Calcium Binding Sites List in 8d40
Calcium binding site 6 out
of 15 in the Crystal Structure of Human CELSR1 EC1-4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Human CELSR1 EC1-4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca507
b:175.7
occ:1.00
|
OD2
|
A:ASP325
|
2.1
|
119.9
|
1.0
|
|
OE1
|
A:GLU290
|
2.4
|
137.8
|
1.0
|
|
OD1
|
A:ASP288
|
2.5
|
148.1
|
1.0
|
|
CG
|
A:ASP288
|
3.0
|
137.5
|
1.0
|
|
CG
|
A:ASP325
|
3.0
|
131.6
|
1.0
|
|
OD2
|
A:ASP288
|
3.1
|
150.1
|
1.0
|
|
O
|
A:HOH601
|
3.2
|
95.6
|
1.0
|
|
OE2
|
A:GLU235
|
3.2
|
111.6
|
1.0
|
|
OD1
|
A:ASP325
|
3.5
|
141.9
|
1.0
|
|
CD
|
A:GLU290
|
3.6
|
128.3
|
1.0
|
|
ND2
|
A:ASN326
|
3.7
|
144.0
|
1.0
|
|
CA
|
A:CA508
|
4.1
|
109.6
|
1.0
|
|
CB
|
A:ASP325
|
4.2
|
137.3
|
1.0
|
|
CD
|
A:GLU235
|
4.3
|
117.3
|
1.0
|
|
CB
|
A:ASP288
|
4.3
|
127.4
|
1.0
|
|
CG
|
A:GLU290
|
4.4
|
127.4
|
1.0
|
|
OE2
|
A:GLU290
|
4.4
|
120.2
|
1.0
|
|
CB
|
A:GLU290
|
4.4
|
126.9
|
1.0
|
|
CA
|
A:ASP288
|
4.6
|
118.3
|
1.0
|
|
CG
|
A:ASN326
|
4.6
|
129.6
|
1.0
|
|
OE1
|
A:GLU235
|
4.7
|
122.2
|
1.0
|
|
N
|
A:GLU290
|
4.8
|
113.2
|
1.0
|
|
OD1
|
A:ASN326
|
4.8
|
132.2
|
1.0
|
|
N
|
A:PHE289
|
4.9
|
108.5
|
1.0
|
|
Calcium binding site 7 out
of 15 in 8d40
Go back to
Calcium Binding Sites List in 8d40
Calcium binding site 7 out
of 15 in the Crystal Structure of Human CELSR1 EC1-4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Human CELSR1 EC1-4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca508
b:109.6
occ:1.00
|
OE1
|
A:GLU235
|
2.0
|
122.2
|
1.0
|
|
OE2
|
A:GLU290
|
2.4
|
120.2
|
1.0
|
|
OD1
|
A:ASP322
|
2.6
|
137.2
|
1.0
|
|
OD1
|
A:ASP358
|
2.6
|
134.1
|
1.0
|
|
O
|
A:VAL323
|
2.7
|
131.9
|
1.0
|
|
OD1
|
A:ASP325
|
2.8
|
141.9
|
1.0
|
|
OE1
|
A:GLU290
|
2.8
|
137.8
|
1.0
|
|
CD
|
A:GLU235
|
2.8
|
117.3
|
1.0
|
|
CD
|
A:GLU290
|
2.9
|
128.3
|
1.0
|
|
OE2
|
A:GLU235
|
3.1
|
111.6
|
1.0
|
|
OD2
|
A:ASP325
|
3.1
|
119.9
|
1.0
|
|
CG
|
A:ASP322
|
3.2
|
124.5
|
1.0
|
|
CG
|
A:ASP325
|
3.2
|
131.6
|
1.0
|
|
OD2
|
A:ASP322
|
3.3
|
129.8
|
1.0
|
|
N
|
A:VAL323
|
3.5
|
118.7
|
1.0
|
|
CG
|
A:ASP358
|
3.6
|
135.0
|
1.0
|
|
C
|
A:VAL323
|
3.8
|
128.2
|
1.0
|
|
CA
|
A:CA507
|
4.1
|
175.7
|
1.0
|
|
ND2
|
A:ASN326
|
4.2
|
144.0
|
1.0
|
|
CA
|
A:VAL323
|
4.2
|
124.6
|
1.0
|
|
CG
|
A:GLU235
|
4.3
|
117.4
|
1.0
|
|
CA
|
A:ASP322
|
4.3
|
113.6
|
1.0
|
|
CB
|
A:ASP322
|
4.3
|
118.8
|
1.0
|
|
OD2
|
A:ASP358
|
4.4
|
150.8
|
1.0
|
|
C
|
A:ASP322
|
4.4
|
115.2
|
1.0
|
|
N
|
A:ASP325
|
4.4
|
142.7
|
1.0
|
|
CB
|
A:ASP325
|
4.4
|
137.3
|
1.0
|
|
CB
|
A:ASP358
|
4.4
|
124.0
|
1.0
|
|
CG
|
A:GLU290
|
4.4
|
127.4
|
1.0
|
|
CA
|
A:ASP358
|
4.4
|
114.5
|
1.0
|
|
CB
|
A:PHE289
|
4.5
|
105.4
|
1.0
|
|
CB
|
A:VAL323
|
4.9
|
127.1
|
1.0
|
|
N
|
A:ASN324
|
5.0
|
132.8
|
1.0
|
|
CA
|
A:ASP325
|
5.0
|
142.2
|
1.0
|
|
Calcium binding site 8 out
of 15 in 8d40
Go back to
Calcium Binding Sites List in 8d40
Calcium binding site 8 out
of 15 in the Crystal Structure of Human CELSR1 EC1-4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Human CELSR1 EC1-4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca509
b:110.9
occ:1.00
|
OD2
|
A:ASP356
|
2.2
|
101.3
|
1.0
|
|
OD2
|
A:ASP358
|
2.3
|
150.8
|
1.0
|
|
O
|
A:ASN326
|
2.4
|
132.0
|
1.0
|
|
O
|
A:ASN362
|
2.5
|
103.0
|
1.0
|
|
OD2
|
A:ASP426
|
2.5
|
136.8
|
1.0
|
|
CG
|
A:ASP426
|
3.0
|
125.9
|
1.0
|
|
ND2
|
A:ASN324
|
3.0
|
133.7
|
1.0
|
|
OD1
|
A:ASP426
|
3.0
|
138.4
|
1.0
|
|
CG
|
A:ASP356
|
3.1
|
110.0
|
1.0
|
|
CG
|
A:ASP358
|
3.3
|
135.0
|
1.0
|
|
OD1
|
A:ASP356
|
3.4
|
127.9
|
1.0
|
|
C
|
A:ASN362
|
3.5
|
110.2
|
1.0
|
|
CB
|
A:ASP358
|
3.5
|
124.0
|
1.0
|
|
C
|
A:ASN326
|
3.6
|
132.6
|
1.0
|
|
CB
|
A:ASN362
|
3.7
|
121.5
|
1.0
|
|
CA
|
A:ASN362
|
3.7
|
113.6
|
1.0
|
|
CG
|
A:ASN324
|
3.7
|
138.1
|
1.0
|
|
CA
|
A:ASN324
|
3.9
|
135.4
|
1.0
|
|
CB
|
A:ASN324
|
4.0
|
136.5
|
1.0
|
|
CB
|
A:ASP426
|
4.3
|
117.5
|
1.0
|
|
N
|
A:ASN326
|
4.4
|
127.8
|
1.0
|
|
CA
|
A:ASN326
|
4.4
|
129.2
|
1.0
|
|
CB
|
A:ASP356
|
4.4
|
111.0
|
1.0
|
|
OD1
|
A:ASP358
|
4.4
|
134.1
|
1.0
|
|
C
|
A:ASN324
|
4.5
|
143.6
|
1.0
|
|
N
|
A:GLU327
|
4.6
|
124.9
|
1.0
|
|
CG
|
A:MET432
|
4.6
|
158.9
|
1.0
|
|
OD1
|
A:ASN324
|
4.7
|
154.6
|
1.0
|
|
CB
|
A:MET432
|
4.7
|
148.0
|
1.0
|
|
N
|
A:ALA363
|
4.7
|
114.0
|
1.0
|
|
CB
|
A:ASN326
|
4.7
|
127.2
|
1.0
|
|
CG
|
A:ASN362
|
4.8
|
124.7
|
1.0
|
|
CA
|
A:GLU327
|
4.9
|
129.5
|
1.0
|
|
CA
|
A:ASP358
|
4.9
|
114.5
|
1.0
|
|
N
|
A:ASP325
|
4.9
|
142.7
|
1.0
|
|
CD
|
A:PRO328
|
5.0
|
117.3
|
1.0
|
|
Calcium binding site 9 out
of 15 in 8d40
Go back to
Calcium Binding Sites List in 8d40
Calcium binding site 9 out
of 15 in the Crystal Structure of Human CELSR1 EC1-4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Human CELSR1 EC1-4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca501
b:108.2
occ:1.00
|
OD1
|
B:ASP146
|
1.9
|
119.3
|
1.0
|
|
OE1
|
B:GLU79
|
2.3
|
133.6
|
1.0
|
|
OD1
|
B:ASP110
|
2.4
|
114.7
|
1.0
|
|
OE2
|
B:GLU21
|
2.4
|
143.7
|
1.0
|
|
OD1
|
B:ASP113
|
2.7
|
135.2
|
1.0
|
|
OE2
|
B:GLU79
|
2.8
|
132.6
|
1.0
|
|
O
|
B:THR111
|
2.8
|
133.0
|
1.0
|
|
CD
|
B:GLU79
|
2.9
|
132.9
|
1.0
|
|
CG
|
B:ASP146
|
3.1
|
120.0
|
1.0
|
|
CD
|
B:GLU21
|
3.3
|
139.3
|
1.0
|
|
NA
|
B:NA502
|
3.5
|
103.7
|
1.0
|
|
CG
|
B:ASP110
|
3.6
|
119.7
|
1.0
|
|
CG
|
B:ASP113
|
3.6
|
135.7
|
1.0
|
|
OE1
|
B:GLU21
|
3.6
|
140.8
|
1.0
|
|
NH2
|
B:ARG78
|
3.8
|
123.1
|
1.0
|
|
N
|
B:THR111
|
3.9
|
114.9
|
1.0
|
|
C
|
B:THR111
|
4.0
|
126.6
|
1.0
|
|
OD2
|
B:ASP146
|
4.0
|
122.0
|
1.0
|
|
CB
|
B:ASP146
|
4.1
|
119.5
|
1.0
|
|
CB
|
B:ASP113
|
4.2
|
131.7
|
1.0
|
|
CA
|
B:ASP146
|
4.2
|
118.4
|
1.0
|
|
CG
|
B:GLU79
|
4.3
|
135.0
|
1.0
|
|
NE
|
B:ARG78
|
4.4
|
118.2
|
1.0
|
|
OD2
|
B:ASP113
|
4.4
|
149.3
|
1.0
|
|
OD2
|
B:ASP110
|
4.4
|
131.2
|
1.0
|
|
N
|
B:ASP113
|
4.4
|
129.1
|
1.0
|
|
CZ
|
B:ARG78
|
4.5
|
121.1
|
1.0
|
|
CB
|
B:ASP110
|
4.6
|
120.8
|
1.0
|
|
CA
|
B:THR111
|
4.6
|
121.7
|
1.0
|
|
CA
|
B:ASP110
|
4.6
|
120.5
|
1.0
|
|
CG
|
B:GLU21
|
4.7
|
136.2
|
1.0
|
|
C
|
B:ASP110
|
4.8
|
116.9
|
1.0
|
|
ND1
|
B:HIS114
|
4.8
|
123.7
|
1.0
|
|
OG1
|
B:THR111
|
4.9
|
127.1
|
1.0
|
|
CA
|
B:ASP113
|
4.9
|
131.7
|
1.0
|
|
N
|
B:ASN112
|
5.0
|
126.0
|
1.0
|
|
Calcium binding site 10 out
of 15 in 8d40
Go back to
Calcium Binding Sites List in 8d40
Calcium binding site 10 out
of 15 in the Crystal Structure of Human CELSR1 EC1-4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Human CELSR1 EC1-4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca503
b:125.8
occ:1.00
|
OD1
|
B:ASN112
|
2.0
|
158.3
|
1.0
|
|
OD2
|
B:ASP144
|
2.0
|
125.7
|
1.0
|
|
O
|
B:HIS114
|
2.1
|
127.2
|
1.0
|
|
OD2
|
B:ASP196
|
2.1
|
136.7
|
1.0
|
|
OD2
|
B:ASP146
|
2.6
|
122.0
|
1.0
|
|
CG
|
B:ASP196
|
2.9
|
134.5
|
1.0
|
|
CG
|
B:ASP144
|
2.9
|
135.0
|
1.0
|
|
CG
|
B:ASN112
|
3.2
|
139.3
|
1.0
|
|
OD1
|
B:ASP144
|
3.2
|
165.6
|
1.0
|
|
OD1
|
B:ASP196
|
3.3
|
151.8
|
1.0
|
|
C
|
B:HIS114
|
3.3
|
137.3
|
1.0
|
|
CG
|
B:ASP146
|
3.4
|
120.0
|
1.0
|
|
CB
|
B:ASP146
|
3.4
|
119.5
|
1.0
|
|
CB
|
B:ASN150
|
3.9
|
126.8
|
1.0
|
|
CB
|
B:ASP196
|
4.0
|
127.7
|
1.0
|
|
CA
|
B:ASN112
|
4.0
|
124.1
|
1.0
|
|
ND2
|
B:ASN112
|
4.0
|
150.8
|
1.0
|
|
N
|
B:HIS114
|
4.1
|
134.9
|
1.0
|
|
CB
|
B:ASN112
|
4.2
|
127.3
|
1.0
|
|
N
|
B:ASP113
|
4.2
|
129.1
|
1.0
|
|
N
|
B:ALA151
|
4.2
|
127.5
|
1.0
|
|
N
|
B:SER115
|
4.3
|
134.1
|
1.0
|
|
CB
|
B:ASP144
|
4.3
|
125.2
|
1.0
|
|
CA
|
B:HIS114
|
4.3
|
135.8
|
1.0
|
|
CA
|
B:SER115
|
4.4
|
141.4
|
1.0
|
|
C
|
B:ASN112
|
4.5
|
125.8
|
1.0
|
|
OD1
|
B:ASP146
|
4.6
|
119.3
|
1.0
|
|
CA
|
B:ASP146
|
4.8
|
118.4
|
1.0
|
|
CG
|
B:ASN150
|
4.8
|
130.3
|
1.0
|
|
ND2
|
B:ASN150
|
4.8
|
137.7
|
1.0
|
|
C
|
B:ASP113
|
4.8
|
140.0
|
1.0
|
|
CB
|
B:HIS114
|
4.9
|
132.5
|
1.0
|
|
N
|
B:ASP146
|
4.9
|
119.2
|
1.0
|
|
CA
|
B:ASN150
|
4.9
|
128.1
|
1.0
|
|
CB
|
B:LEU204
|
5.0
|
140.2
|
1.0
|
|
C
|
B:ASN150
|
5.0
|
130.5
|
1.0
|
|
Reference:
E.Tamilselvan,
M.Sotomayor.
Crystal Structure of Human CELSR1 EC1-4 To Be Published.
Page generated: Fri Jul 19 07:51:11 2024
|
