Calcium in PDB 8dh6: Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs

Enzymatic activity of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs

All present enzymatic activity of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs:
7.1.1.9;

Other elements in 8dh6:

The structure of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Zinc (Zn) 1 atom
Copper (Cu) 2 atoms
Magnesium (Mg) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs (pdb code 8dh6). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs, PDB code: 8dh6:

Calcium binding site 1 out of 1 in 8dh6

Go back to Calcium Binding Sites List in 8dh6
Calcium binding site 1 out of 1 in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca601

b:61.2
occ:1.00
O a:ALA42 2.4 58.9 1.0
O a:GLU39 2.4 57.7 1.0
O a:GLY44 2.5 61.8 1.0
OE1 a:GLU39 2.6 57.7 1.0
C a:GLU39 3.6 57.7 1.0
C a:ALA42 3.6 58.9 1.0
C a:GLY44 3.6 61.8 1.0
CD a:GLU39 3.8 57.7 1.0
CG a:GLN46 3.9 63.5 1.0
N a:GLY44 3.9 61.8 1.0
O a:PRO441 4.1 57.5 1.0
C a:PRO43 4.1 60.1 1.0
CA a:PRO43 4.3 60.1 1.0
N a:ALA42 4.3 58.9 1.0
CA a:LEU40 4.3 54.9 1.0
N a:GLN46 4.3 63.5 1.0
N a:LEU40 4.4 54.9 1.0
CA a:GLY44 4.4 61.8 1.0
N a:PRO43 4.4 60.1 1.0
CG a:GLU39 4.5 57.7 1.0
CB a:GLN46 4.5 63.5 1.0
N a:SER45 4.6 63.7 1.0
CA a:ALA42 4.6 58.9 1.0
CA a:GLU39 4.6 57.7 1.0
N a:ALA41 4.7 55.3 1.0
C a:LEU40 4.7 54.9 1.0
OE2 a:GLU39 4.7 57.7 1.0
CA a:SER45 4.7 63.7 1.0
O a:PRO43 4.7 60.1 1.0
OD2 a:ASP442 5.0 59.7 1.0

Reference:

A.S.Godoy, Y.Song, H.Cheruvara, A.Quigley, G.Oliva. Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs To Be Published.
Page generated: Tue Apr 4 19:33:43 2023

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