Calcium in PDB 8ear: Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp

The structure of Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp also contains other interesting chemical elements:

Zinc

(Zn)

4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Calcium atom in the Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp (pdb code 8ear). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp, PDB code: 8ear:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 16 in the Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2804 b:130.9 occ:1.00 OD1 A:ASN2583 2.8 38.6 0.5 CG A:ASN2583 3.0 38.6 0.5 ND2 A:ASN2583 3.3 38.6 0.5 CE2 B:PHE2586 3.6 76.9 0.5 CB A:ASN2583 3.7 38.6 0.5 CB A:ASN2583 3.8 38.6 0.5 CZ B:PHE2586 4.2 76.9 0.5 CD2 B:PHE2586 4.2 76.9 0.5 O A:ILE2578 4.4 66.1 1.0 CA A:ASN2583 4.4 38.6 0.5 CA A:ASN2583 4.5 38.6 0.5 CD2 A:PHE2586 4.8 76.9 0.5 N A:ASN2583 4.8 38.6 0.5 CE2 A:PHE2586 4.8 76.9 0.5 CG A:ASN2583 4.9 38.6 0.5 N A:ASN2583 4.9 38.6 0.5

Calcium binding site 2 out of 16 in the Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2805 b:151.5 occ:1.00 OE1 A:GLU283 3.7 106.3 1.0 O A:PHE53 3.9 107.4 1.0 CD A:GLU283 4.1 106.3 1.0 OE2 A:GLU283 4.2 106.3 1.0 C A:PHE53 4.3 107.4 1.0 CB A:PHE53 4.4 107.4 1.0 CA A:GLY237 4.5 88.4 1.0 CA A:PHE53 4.7 107.4 1.0 N A:PHE53 4.7 107.4 1.0 CG A:GLU285 4.8 101.6 1.0 OE2 A:GLU285 4.9 101.6 1.0 N A:ARG54 4.9 103.3 1.0

Calcium binding site 3 out of 16 in the Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2806 b:110.4 occ:1.00 NE2 A:GLN2045 2.7 101.7 1.0 O A:TYR2656 3.7 102.7 1.0 CD A:GLN2045 3.7 101.7 1.0 CG A:GLN2045 4.0 101.7 1.0 CG A:GLU2042 4.2 96.0 1.0 NE2 A:HIS1980 4.3 104.8 1.0 OE2 A:GLU2042 4.4 96.0 1.0 CD A:GLU2042 4.8 96.0 1.0 C A:TYR2656 4.8 102.7 1.0 CE1 A:HIS1980 4.8 104.8 1.0 OE1 A:GLN2045 4.8 101.7 1.0 CB A:GLN2045 4.9 101.7 1.0

Calcium binding site 4 out of 16 in the Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2807 b:114.9 occ:1.00 OG A:SER2545 3.4 76.0 1.0 ND1 A:HIS2541 3.4 68.0 1.0 OD1 D:ASP2551 3.5 89.5 1.0 NH2 A:ARG2544 3.7 77.1 1.0 CA A:HIS2541 4.2 68.0 1.0 O A:HIS2541 4.2 68.0 1.0 CB A:HIS2541 4.3 68.0 1.0 CG A:HIS2541 4.3 68.0 1.0 CE1 A:HIS2541 4.4 68.0 1.0 CG D:ASP2551 4.5 89.5 1.0 CZ A:ARG2544 4.5 77.1 1.0 CB A:SER2545 4.7 76.0 1.0 C A:HIS2541 4.7 68.0 1.0 OD2 D:ASP2551 4.8 89.5 1.0 N A:SER2545 4.9 76.0 1.0

Calcium binding site 5 out of 16 in the Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2805 b:133.3 occ:1.00 OD1 B:ASN2583 2.8 38.6 0.5 CG B:ASN2583 3.0 38.6 0.5 ND2 B:ASN2583 3.3 38.6 0.5 CE2 C:PHE2586 3.6 76.9 0.5 CB B:ASN2583 3.7 38.6 0.5 CB B:ASN2583 3.8 38.6 0.5 CZ C:PHE2586 4.2 76.9 0.5 CD2 C:PHE2586 4.2 76.9 0.5 O B:ILE2578 4.3 66.1 1.0 CA B:ASN2583 4.4 38.6 0.5 CA B:ASN2583 4.4 38.6 0.5 CD2 B:PHE2586 4.8 76.9 0.5 N B:ASN2583 4.8 38.6 0.5 CE2 B:PHE2586 4.8 76.9 0.5 CG B:ASN2583 4.9 38.6 0.5 N B:ASN2583 4.9 38.6 0.5

Calcium binding site 6 out of 16 in the Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2806 b:150.6 occ:1.00 OE1 B:GLU283 3.7 106.3 1.0 O B:PHE53 3.9 107.4 1.0 CD B:GLU283 4.1 106.3 1.0 OE2 B:GLU283 4.2 106.3 1.0 C B:PHE53 4.3 107.4 1.0 CB B:PHE53 4.4 107.4 1.0 CA B:GLY237 4.5 88.4 1.0 CA B:PHE53 4.7 107.4 1.0 N B:PHE53 4.7 107.4 1.0 CG B:GLU285 4.8 101.6 1.0 OE2 B:GLU285 4.9 101.6 1.0 N B:ARG54 4.9 103.3 1.0

Calcium binding site 7 out of 16 in the Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2807 b:112.8 occ:1.00 NE2 B:GLN2045 2.7 101.7 1.0 O B:TYR2656 3.7 102.7 1.0 CD B:GLN2045 3.8 101.7 1.0 CG B:GLN2045 4.0 101.7 1.0 CG B:GLU2042 4.2 96.0 1.0 NE2 B:HIS1980 4.3 104.8 1.0 OE2 B:GLU2042 4.4 96.0 1.0 CD B:GLU2042 4.8 96.0 1.0 C B:TYR2656 4.8 102.7 1.0 CE1 B:HIS1980 4.8 104.8 1.0 OE1 B:GLN2045 4.8 101.7 1.0 CB B:GLN2045 4.9 101.7 1.0

Calcium binding site 8 out of 16 in the Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2808 b:116.8 occ:1.00 OG B:SER2545 3.4 76.0 1.0 ND1 B:HIS2541 3.4 68.0 1.0 OD1 A:ASP2551 3.5 89.5 1.0 NH2 B:ARG2544 3.7 77.1 1.0 CA B:HIS2541 4.2 68.0 1.0 O B:HIS2541 4.2 68.0 1.0 CB B:HIS2541 4.3 68.0 1.0 CG B:HIS2541 4.3 68.0 1.0 CE1 B:HIS2541 4.4 68.0 1.0 CG A:ASP2551 4.5 89.5 1.0 CZ B:ARG2544 4.5 77.1 1.0 C B:HIS2541 4.7 68.0 1.0 CB B:SER2545 4.7 76.0 1.0 OD2 A:ASP2551 4.8 89.5 1.0 N B:SER2545 4.9 76.0 1.0

Calcium binding site 9 out of 16 in the Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca2809 b:135.7 occ:1.00 OD1 C:ASN2583 2.8 38.6 0.5 CG C:ASN2583 3.0 38.6 0.5 ND2 C:ASN2583 3.3 38.6 0.5 CE2 D:PHE2586 3.6 76.9 0.5 CB C:ASN2583 3.7 38.6 0.5 CB C:ASN2583 3.8 38.6 0.5 CZ D:PHE2586 4.2 76.9 0.5 CD2 D:PHE2586 4.2 76.9 0.5 O C:ILE2578 4.3 66.1 1.0 CA C:ASN2583 4.4 38.6 0.5 CA C:ASN2583 4.4 38.6 0.5 CD2 C:PHE2586 4.8 76.9 0.5 N C:ASN2583 4.8 38.6 0.5 CE2 C:PHE2586 4.8 76.9 0.5 CG C:ASN2583 4.8 38.6 0.5 N C:ASN2583 4.9 38.6 0.5

Calcium binding site 10 out of 16 in the Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of the Full-Length IP3R1 Channel Determined in the Presence of Calcium/IP3/Atp within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca2810 b:151.4 occ:1.00 OE1 C:GLU283 3.7 106.3 1.0 O C:PHE53 3.9 107.4 1.0 CD C:GLU283 4.1 106.3 1.0 OE2 C:GLU283 4.2 106.3 1.0 C C:PHE53 4.3 107.4 1.0 CB C:PHE53 4.4 107.4 1.0 CA C:GLY237 4.5 88.4 1.0 CA C:PHE53 4.7 107.4 1.0 N C:PHE53 4.7 107.4 1.0 CG C:GLU285 4.8 101.6 1.0 OE2 C:GLU285 4.9 101.6 1.0 N C:ARG54 4.9 103.3 1.0

G.Fan, M.R.Baker, L.E.Terry, V.Arige, M.Chen, A.B.Seryshev, M.L.Baker, S.J.Ludtke, D.I.Yule, I.I.Serysheva. Conformational Motions and Ligand-Binding Underlying Gating and Regulation in Ip 3 R Channel. Nat Commun V. 13 6942 2022.
ISSN: ESSN 2041-1723
PubMed: 36376291
DOI: 10.1038/S41467-022-34574-1