Calcium in PDB 8ebt: Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (CY5)

All present enzymatic activity of Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (CY5):
3.6.4.12;

The structure of Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (CY5) also contains other interesting chemical elements:

Zinc	(Zn)	6 atoms
Iron	(Fe)	4 atoms

The binding sites of Calcium atom in the Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (CY5) (pdb code 8ebt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (CY5), PDB code: 8ebt:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (CY5)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (CY5) within 5.0Å range: probe atom residue distance (Å) B Occ J:Ca400 b:504.7 occ:1.00 OD2 J:ASP116 2.6 524.4 1.0 OG1 J:THR118 2.9 515.3 1.0 OD1 J:ASN125 3.3 469.4 1.0 CG2 J:THR118 3.3 515.3 1.0 CG J:ASP116 3.5 524.4 1.0 CB J:THR118 3.5 515.3 1.0 OG J:SER122 3.7 462.0 1.0 OD1 J:ASP116 3.8 524.4 1.0 CG J:ASN125 4.3 469.4 1.0 CB J:SER122 4.4 462.0 1.0 O J:LYS120 4.6 481.8 1.0 ND2 J:ASN125 4.6 469.4 1.0 CB J:ASP116 4.8 524.4 1.0 OD1 J:ASP114 4.8 509.1 1.0 CA J:THR118 4.9 515.3 1.0

Calcium binding site 2 out of 2 in the Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (CY5)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (CY5) within 5.0Å range: probe atom residue distance (Å) B Occ J:Ca401 b:469.1 occ:1.00 N J:SER158 2.7 459.1 1.0 OD2 J:ASP154 3.0 466.0 1.0 OE1 J:GLU161 3.0 452.2 1.0 CD J:GLU161 3.0 452.2 1.0 OG J:SER158 3.1 459.1 1.0 CB J:SER158 3.1 459.1 1.0 OE2 J:GLU161 3.2 452.2 1.0 C J:VAL157 3.3 459.7 1.0 CA J:VAL157 3.4 459.7 1.0 O J:GLU156 3.4 463.0 1.0 CA J:SER158 3.5 459.1 1.0 OD1 J:ASP154 3.6 466.0 1.0 CG J:ASP154 3.6 466.0 1.0 OD1 J:ASP152 3.6 464.9 1.0 CG J:GLU161 3.8 452.2 1.0 C J:GLU156 3.9 463.0 1.0 OD2 J:ASP152 3.9 464.9 1.0 N J:VAL157 3.9 459.7 1.0 CG J:ASP152 4.1 464.9 1.0 OD1 J:ASP150 4.3 453.0 1.0 O J:VAL157 4.3 459.7 1.0 CB J:GLU161 4.4 452.2 1.0 CE J:LYS120 4.6 481.8 1.0 CD J:LYS120 4.6 481.8 1.0 CG J:GLU156 4.7 463.0 1.0 C J:SER158 4.7 459.1 1.0 CB J:VAL157 4.8 459.7 1.0

J.Kim, C.L.Li, X.Chen, Y.Cui, F.M.Golebiowski, H.Wang, F.Hanaoka, K.Sugasawa, W.Yang. Lesion Recognition By Xpc, Tfiih and Xpa in Dna Excision Repair Nature 2023.
ISSN: ESSN 1476-4687