Calcium in PDB 8em7: Cryo-Em Structure of LRP2 at pH 5.2

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 88;

Binding sites:

The binding sites of Calcium atom in the Cryo-Em Structure of LRP2 at pH 5.2 (pdb code 8em7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 88 binding sites of Calcium where determined in the Cryo-Em Structure of LRP2 at pH 5.2, PDB code: 8em7:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 88 in 8em7

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Calcium binding site 1 out of 88 in the Cryo-Em Structure of LRP2 at pH 5.2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of LRP2 at pH 5.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4755

b:30.0
occ:1.00
OD1 A:ASN3575 2.2 72.0 1.0
OD2 A:ASP3585 2.2 74.1 1.0
O A:ARG3577 2.3 74.7 1.0
OE1 A:GLU3586 2.3 73.2 1.0
O A:ALA3572 2.3 72.7 1.0
OE2 A:GLU3586 2.4 73.2 1.0
OD1 A:ASP3585 2.6 74.1 1.0
CG A:ASP3585 2.7 74.1 1.0
CD A:GLU3586 2.7 73.2 1.0
OD2 A:ASP3579 2.8 75.7 1.0
CG A:ASN3575 3.1 72.0 1.0
C A:ALA3572 3.4 72.7 1.0
C A:ARG3577 3.5 74.7 1.0
ND2 A:ASN3575 3.5 72.0 1.0
CG A:ASP3579 3.7 75.7 1.0
N A:ASP3579 3.8 75.7 1.0
N A:ASN3575 3.9 72.0 1.0
CB A:ALA3572 4.0 72.7 1.0
CA A:ALA3572 4.0 72.7 1.0
N A:ARG3577 4.0 74.7 1.0
CB A:ASP3585 4.1 74.1 1.0
CG A:GLU3586 4.2 73.2 1.0
CB A:ASP3579 4.2 75.7 1.0
CB A:ASN3575 4.3 72.0 1.0
C A:LEU3573 4.3 71.0 1.0
CA A:ARG3577 4.3 74.7 1.0
N A:GLN3578 4.4 75.7 1.0
O A:LEU3573 4.4 71.0 1.0
CA A:GLN3578 4.4 75.7 1.0
N A:LEU3573 4.4 71.0 1.0
CA A:ASN3575 4.5 72.0 1.0
OD1 A:ASP3579 4.6 75.7 1.0
N A:ALA3576 4.6 73.0 1.0
C A:GLN3578 4.6 75.7 1.0
N A:CYS3574 4.6 71.2 1.0
CA A:ASP3579 4.7 75.7 1.0
CA A:LEU3573 4.7 71.0 1.0
N A:GLU3586 4.7 73.2 1.0
C A:ASN3575 4.8 72.0 1.0
C A:CYS3574 4.8 71.2 1.0
C A:ASP3585 4.9 74.1 1.0
CA A:ASP3585 4.9 74.1 1.0
CA A:CYS3574 5.0 71.2 1.0
CB A:ARG3577 5.0 30.0 1.0

Calcium binding site 2 out of 88 in 8em7

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Calcium binding site 2 out of 88 in the Cryo-Em Structure of LRP2 at pH 5.2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of LRP2 at pH 5.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4756

b:30.0
occ:1.00
OD2 A:ASP92 2.2 59.0 1.0
OD1 A:ASP88 2.3 64.3 1.0
O A:TRP85 2.4 59.2 1.0
O A:ASP90 2.4 58.7 1.0
OE2 A:GLU99 2.5 65.3 1.0
O A:VAL86 2.5 65.2 1.0
OD1 A:ASP98 2.6 63.0 1.0
CG A:ASP92 2.9 59.0 1.0
OD1 A:ASP92 3.0 59.0 1.0
C A:VAL86 3.3 65.2 1.0
CG A:ASP88 3.3 64.3 1.0
CD A:GLU99 3.5 65.3 1.0
CG A:ASP98 3.5 63.0 1.0
C A:ASP90 3.5 58.7 1.0
C A:TRP85 3.5 59.2 1.0
N A:ASP88 3.7 64.3 1.0
N A:ASP90 3.8 58.7 1.0
CA A:VAL86 3.9 65.2 1.0
CG A:GLU99 4.0 65.3 1.0
OD2 A:ASP88 4.0 64.3 1.0
CB A:ASP98 4.1 63.0 1.0
CA A:ASP90 4.1 58.7 1.0
N A:CYS87 4.1 71.9 1.0
N A:VAL86 4.2 65.2 1.0
N A:ASP92 4.2 59.0 1.0
CB A:ASP92 4.2 59.0 1.0
N A:GLN89 4.3 63.5 1.0
CB A:ASP88 4.3 64.3 1.0
CA A:CYS87 4.3 71.9 1.0
CA A:ASP88 4.4 64.3 1.0
CB A:ASP90 4.4 30.0 1.0
OD2 A:ASP98 4.4 63.0 1.0
C A:CYS87 4.4 71.9 1.0
OE1 A:GLU99 4.5 65.3 1.0
C A:ASP88 4.6 64.3 1.0
N A:LYS91 4.7 59.8 1.0
CA A:TRP85 4.7 59.2 1.0
C A:GLN89 4.7 63.5 1.0
C A:ASP98 4.9 63.0 1.0
CA A:ASP92 4.9 59.0 1.0
NZ A:LYS385 4.9 67.4 1.0
CA A:LYS91 4.9 59.8 1.0
C A:LYS91 4.9 59.8 1.0
N A:GLU99 5.0 65.3 1.0

Calcium binding site 3 out of 88 in 8em7

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Calcium binding site 3 out of 88 in the Cryo-Em Structure of LRP2 at pH 5.2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of LRP2 at pH 5.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4757

b:30.0
occ:1.00
O A:VAL130 2.2 69.6 1.0
OD2 A:ASP132 2.3 66.5 1.0
OE2 A:GLU139 2.3 69.4 1.0
OD1 A:ASP128 2.3 71.6 1.0
O A:TYR125 2.4 65.6 1.0
OD2 A:ASP138 2.6 67.7 1.0
CD A:GLU139 3.3 69.4 1.0
C A:VAL130 3.4 69.6 1.0
CG A:ASP132 3.4 66.5 1.0
CG A:ASP128 3.5 71.6 1.0
C A:TYR125 3.5 65.6 1.0
CG A:ASP138 3.7 67.7 1.0
N A:VAL130 3.8 69.6 1.0
CG A:GLU139 3.9 69.4 1.0
CA A:VAL130 3.9 69.6 1.0
CB A:VAL130 4.0 69.6 1.0
N A:ASP128 4.0 71.6 1.0
CA A:TYR125 4.0 65.6 1.0
N A:ASP132 4.0 66.5 1.0
OD2 A:ASP128 4.1 71.6 1.0
CB A:ASP132 4.1 66.5 1.0
CB A:TYR125 4.1 30.0 1.0
NH1 A:ARG171 4.1 30.0 1.0
CB A:ASP138 4.3 67.7 1.0
OE1 A:GLU139 4.4 69.4 1.0
OD1 A:ASP132 4.4 66.5 1.0
O A:ARG126 4.5 69.2 1.0
C A:ARG126 4.5 69.2 1.0
N A:SER131 4.5 66.8 1.0
CG1 A:VAL130 4.6 69.6 1.0
CA A:ASP128 4.6 71.6 1.0
CB A:ASP128 4.6 71.6 1.0
N A:ARG126 4.6 69.2 1.0
C A:ASP128 4.6 71.6 1.0
OD1 A:ASP138 4.6 67.7 1.0
N A:CYS127 4.7 72.6 1.0
CA A:ASP132 4.7 66.5 1.0
N A:HIS129 4.8 71.8 1.0
CA A:SER131 4.8 66.8 1.0
CA A:CYS127 4.9 72.6 1.0
C A:CYS127 4.9 72.6 1.0
C A:SER131 4.9 66.8 1.0
CA A:ARG126 5.0 69.2 1.0
CG A:TYR125 5.0 30.0 1.0

Calcium binding site 4 out of 88 in 8em7

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Calcium binding site 4 out of 88 in the Cryo-Em Structure of LRP2 at pH 5.2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of LRP2 at pH 5.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4758

b:30.0
occ:1.00
OD1 A:ASP165 2.3 78.3 1.0
OE2 A:GLU176 2.3 81.8 1.0
O A:LYS167 2.3 72.2 1.0
OD2 A:ASP169 2.4 74.2 1.0
O A:GLN162 2.4 77.3 1.0
OD2 A:ASP175 2.4 80.8 1.0
CD A:GLU176 3.3 81.8 1.0
CG A:ASP165 3.3 78.3 1.0
C A:LYS167 3.4 72.2 1.0
CG A:ASP169 3.4 74.2 1.0
C A:GLN162 3.6 77.3 1.0
CG A:ASP175 3.6 80.8 1.0
CG A:GLU176 3.6 81.8 1.0
O A:LYS163 3.8 81.9 1.0
N A:LYS167 3.8 72.2 1.0
OD2 A:ASP165 3.8 78.3 1.0
N A:ASP169 3.9 74.2 1.0
N A:ASP165 4.0 78.3 1.0
CB A:ASP169 4.0 74.2 1.0
C A:LYS163 4.1 81.9 1.0
CA A:LYS167 4.1 72.2 1.0
N A:HIS166 4.3 77.0 1.0
CB A:ASP175 4.3 80.8 1.0
CA A:GLN162 4.4 77.3 1.0
CB A:LYS167 4.4 30.0 1.0
OD1 A:ASP169 4.4 74.2 1.0
OE1 A:GLU176 4.4 81.8 1.0
N A:VAL168 4.4 71.3 1.0
OD1 A:ASP175 4.5 80.8 1.0
CB A:ASP165 4.6 78.3 1.0
N A:CYS164 4.6 83.2 1.0
N A:LYS163 4.6 81.9 1.0
CA A:VAL168 4.6 71.3 1.0
CA A:ASP165 4.6 78.3 1.0
CA A:ASP169 4.6 74.2 1.0
C A:HIS166 4.7 77.0 1.0
CA A:LYS163 4.7 81.9 1.0
C A:VAL168 4.7 71.3 1.0
C A:ASP165 4.7 78.3 1.0
CB A:GLN162 4.7 30.0 1.0
CA A:CYS164 4.8 83.2 1.0
N A:GLU176 4.9 81.8 1.0
CA A:HIS166 4.9 77.0 1.0
C A:CYS164 4.9 83.2 1.0
CB A:GLU176 5.0 81.8 1.0

Calcium binding site 5 out of 88 in 8em7

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Calcium binding site 5 out of 88 in the Cryo-Em Structure of LRP2 at pH 5.2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of LRP2 at pH 5.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4759

b:30.0
occ:1.00
OD1 A:ASP203 2.2 69.2 1.0
OD1 A:ASP207 2.3 68.0 1.0
OD2 A:ASP213 2.3 67.6 1.0
O A:TYR200 2.3 61.7 1.0
O A:ASP205 2.4 71.1 1.0
OE2 A:GLU214 2.4 66.1 1.0
CG A:ASP203 3.0 69.2 1.0
C A:TYR200 3.4 61.7 1.0
CD A:GLU214 3.4 66.1 1.0
CG A:ASP207 3.4 68.0 1.0
CG A:ASP213 3.5 67.6 1.0
C A:ASP205 3.6 71.1 1.0
OD2 A:ASP203 3.6 69.2 1.0
N A:ASP203 3.9 69.2 1.0
CG A:GLU214 3.9 66.1 1.0
N A:ASP207 4.0 68.0 1.0
CB A:ASP207 4.0 68.0 1.0
CB A:ASP203 4.1 69.2 1.0
CA A:VAL201 4.1 63.9 1.0
N A:CYS202 4.1 69.1 1.0
N A:VAL201 4.1 63.9 1.0
N A:ASP205 4.2 71.1 1.0
CB A:ASP213 4.3 67.6 1.0
CA A:TYR200 4.3 61.7 1.0
OD1 A:ASP213 4.3 67.6 1.0
C A:VAL201 4.4 63.9 1.0
CB A:TYR200 4.4 30.0 1.0
OE1 A:GLU214 4.4 66.1 1.0
CA A:ASP205 4.4 71.1 1.0
OD2 A:ASP207 4.4 68.0 1.0
CA A:ASP203 4.5 69.2 1.0
N A:ASN206 4.5 68.8 1.0
NH1 A:ARG576 4.6 61.4 1.0
C A:ASN206 4.7 68.8 1.0
CA A:ASP207 4.7 68.0 1.0
CA A:ASN206 4.7 68.8 1.0
O A:ASP213 4.7 67.6 1.0
CB A:ASP205 4.8 30.0 1.0
N A:HIS204 4.8 72.2 1.0
C A:ASP203 4.8 69.2 1.0
C A:CYS202 4.9 69.1 1.0
CA A:CYS202 5.0 69.1 1.0
C A:ASP213 5.0 67.6 1.0

Calcium binding site 6 out of 88 in 8em7

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Calcium binding site 6 out of 88 in the Cryo-Em Structure of LRP2 at pH 5.2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo-Em Structure of LRP2 at pH 5.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4760

b:30.0
occ:1.00
O A:ASP244 2.3 70.6 1.0
OD2 A:ASP246 2.3 70.2 1.0
OE2 A:GLU253 2.3 70.0 1.0
OD1 A:ASP242 2.3 70.2 1.0
O A:TRP239 2.4 66.9 1.0
OD2 A:ASP252 2.5 69.6 1.0
C A:ASP244 3.3 70.6 1.0
CG A:ASP246 3.3 70.2 1.0
CD A:GLU253 3.4 70.0 1.0
CG A:ASP242 3.4 70.2 1.0
C A:TRP239 3.5 66.9 1.0
N A:ASP244 3.6 70.6 1.0
CB A:ASP244 3.6 70.6 1.0
CG A:ASP252 3.6 69.6 1.0
CA A:ASP244 3.7 70.6 1.0
OD2 A:ASP242 3.9 70.2 1.0
CG A:GLU253 3.9 70.0 1.0
NZ A:LYS554 3.9 61.4 1.0
OD1 A:ASP246 4.1 70.2 1.0
CB A:ASP246 4.1 70.2 1.0
N A:ASP246 4.1 70.2 1.0
CA A:TRP239 4.1 66.9 1.0
O A:ASP252 4.2 69.6 1.0
N A:ASP242 4.2 70.2 1.0
OD1 A:ASP252 4.3 69.6 1.0
CB A:TRP239 4.4 66.9 1.0
OE1 A:GLU253 4.4 70.0 1.0
N A:ASP245 4.4 72.0 1.0
N A:VAL240 4.6 64.8 1.0
CB A:ASP252 4.6 69.6 1.0
C A:VAL240 4.7 64.8 1.0
CB A:ASP242 4.7 70.2 1.0
N A:CYS241 4.7 69.0 1.0
N A:GLY243 4.7 70.5 1.0
CG A:ASP244 4.7 70.6 1.0
CA A:ASP242 4.8 70.2 1.0
CA A:ASP246 4.8 70.2 1.0
CA A:VAL240 4.8 64.8 1.0
C A:ASP242 4.8 70.2 1.0
C A:GLY243 4.8 70.5 1.0
C A:ASP252 5.0 69.6 1.0
CA A:ASP245 5.0 72.0 1.0

Calcium binding site 7 out of 88 in 8em7

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Calcium binding site 7 out of 88 in the Cryo-Em Structure of LRP2 at pH 5.2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cryo-Em Structure of LRP2 at pH 5.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4761

b:30.0
occ:1.00
OD1 A:ASP286 2.3 64.3 1.0
O A:VAL288 2.4 58.7 1.0
O A:ASP296 2.4 63.0 1.0
O A:LYS283 2.5 59.2 1.0
OE1 A:GLU297 2.5 65.3 1.0
OD2 A:ASP296 2.6 63.0 1.0
OD2 A:ASP290 2.6 59.0 1.0
CG A:ASP296 3.2 63.0 1.0
CG A:ASP286 3.5 64.3 1.0
CG A:ASP290 3.5 59.0 1.0
C A:VAL288 3.5 58.7 1.0
C A:ASP296 3.5 63.0 1.0
CD A:GLU297 3.6 65.3 1.0
N A:VAL288 3.6 58.7 1.0
C A:LYS283 3.7 59.2 1.0
CB A:ASP296 3.8 63.0 1.0
N A:GLY287 3.8 63.5 1.0
N A:ASP290 3.9 59.0 1.0
OD1 A:ASP296 4.0 63.0 1.0
OD2 A:ASP286 4.1 64.3 1.0
N A:ASP286 4.2 64.3 1.0
OD1 A:ASP290 4.2 59.0 1.0
CB A:ASP290 4.2 59.0 1.0
CA A:VAL288 4.2 58.7 1.0
CA A:LYS283 4.2 59.2 1.0
CA A:ASP296 4.3 63.0 1.0
CG A:GLU297 4.3 65.3 1.0
CA A:PRO289 4.3 59.8 1.0
N A:PRO289 4.4 59.8 1.0
N A:GLU297 4.4 65.3 1.0
CA A:GLU297 4.5 65.3 1.0
C A:GLY287 4.5 63.5 1.0
OE2 A:GLU297 4.5 65.3 1.0
CA A:GLY287 4.6 63.5 1.0
CB A:ASP286 4.6 64.3 1.0
C A:CYS285 4.6 71.9 1.0
C A:PRO289 4.6 59.8 1.0
CB A:LYS283 4.6 30.0 1.0
C A:ASP286 4.6 64.3 1.0
C A:VAL284 4.6 65.2 1.0
CA A:ASP286 4.7 64.3 1.0
N A:CYS285 4.7 71.9 1.0
CA A:ASP290 4.7 59.0 1.0
N A:VAL284 4.8 65.2 1.0
O A:VAL284 4.9 65.2 1.0
CA A:CYS285 4.9 71.9 1.0
CB A:VAL288 5.0 30.0 1.0
CB A:GLU297 5.0 65.3 1.0

Calcium binding site 8 out of 88 in 8em7

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Calcium binding site 8 out of 88 in the Cryo-Em Structure of LRP2 at pH 5.2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cryo-Em Structure of LRP2 at pH 5.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4762

b:30.0
occ:1.00
OD1 A:ASP1045 2.3 71.6 1.0
O A:VAL1047 2.3 69.6 1.0
O A:PHE1042 2.4 65.6 1.0
OD1 A:ASP1049 2.5 66.5 1.0
OE2 A:GLU1056 2.6 69.4 1.0
OD2 A:ASP1055 2.8 67.7 1.0
C A:VAL1047 3.3 69.6 1.0
CG A:ASP1045 3.3 71.6 1.0
C A:PHE1042 3.4 65.6 1.0
N A:ASP1049 3.5 66.5 1.0
CB A:ASP1055 3.5 67.7 1.0
CG A:ASP1055 3.6 67.7 1.0
CG A:ASP1049 3.7 66.5 1.0
CA A:ASP1048 3.7 66.8 1.0
OD2 A:ASP1045 3.7 71.6 1.0
CD A:GLU1056 3.8 69.4 1.0
N A:ASP1048 3.9 66.8 1.0
CB A:PHE1042 4.0 65.6 1.0
C A:ASP1048 4.0 66.8 1.0
CA A:PHE1042 4.1 65.6 1.0
OE1 A:GLU1056 4.2 69.4 1.0
N A:ASP1045 4.3 71.6 1.0
N A:VAL1047 4.3 69.6 1.0
CB A:ASP1049 4.3 66.5 1.0
N A:ARG1043 4.4 69.2 1.0
CA A:VAL1047 4.5 69.6 1.0
CA A:ASP1049 4.5 66.5 1.0
C A:ARG1043 4.5 69.2 1.0
CB A:ASP1045 4.6 71.6 1.0
CA A:ARG1043 4.6 69.2 1.0
OD2 A:ASP1049 4.6 66.5 1.0
O A:ARG1043 4.7 69.2 1.0
NH2 A:ARG1409 4.8 83.7 1.0
CA A:ASP1045 4.8 71.6 1.0
C A:ASP1045 4.8 71.6 1.0
OD1 A:ASP1055 4.8 67.7 1.0
N A:GLY1046 4.9 71.8 1.0
N A:CYS1044 4.9 72.6 1.0
CB A:ASP1048 5.0 66.8 1.0
CA A:ASP1055 5.0 67.7 1.0

Calcium binding site 9 out of 88 in 8em7

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Calcium binding site 9 out of 88 in the Cryo-Em Structure of LRP2 at pH 5.2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Cryo-Em Structure of LRP2 at pH 5.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4763

b:30.0
occ:1.00
OD2 A:ASP1097 2.1 85.3 1.0
OE2 A:GLU1098 2.2 88.4 1.0
OD2 A:ASP1091 2.3 79.2 1.0
O A:GLN1089 2.3 77.1 1.0
OD1 A:ASP1087 2.3 79.2 1.0
O A:TRP1084 2.3 76.0 1.0
CG A:ASP1097 3.2 85.3 1.0
CD A:GLU1098 3.3 88.4 1.0
CG A:ASP1087 3.3 79.2 1.0
C A:GLN1089 3.4 77.1 1.0
CG A:ASP1091 3.4 79.2 1.0
C A:TRP1084 3.5 76.0 1.0
CA A:ASN1090 3.5 79.7 1.0
N A:ASP1091 3.5 79.2 1.0
OD2 A:ASP1087 3.6 79.2 1.0
C A:ASN1090 3.8 79.7 1.0
CB A:ASP1097 3.8 85.3 1.0
N A:ASN1090 3.9 79.7 1.0
CG A:GLU1098 3.9 88.4 1.0
O A:ASP1087 4.1 79.2 1.0
CB A:ASP1091 4.1 79.2 1.0
CA A:TRP1084 4.1 76.0 1.0
OD1 A:ASP1097 4.2 85.3 1.0
N A:ASP1087 4.2 79.2 1.0
OE1 A:GLU1098 4.3 88.4 1.0
CB A:TRP1084 4.4 76.0 1.0
OD1 A:ASP1091 4.4 79.2 1.0
CA A:ASP1091 4.4 79.2 1.0
CB A:ASP1087 4.6 79.2 1.0
N A:ARG1085 4.6 81.8 1.0
C A:ARG1085 4.6 81.8 1.0
NH1 A:ARG1413 4.6 71.3 1.0
CA A:GLN1089 4.7 77.1 1.0
C A:ASP1087 4.7 79.2 1.0
O A:ASN1090 4.7 79.7 1.0
N A:CYS1086 4.8 83.7 1.0
CB A:ASN1090 4.8 79.7 1.0
CA A:ASP1087 4.8 79.2 1.0
O A:ARG1085 4.8 81.8 1.0
N A:GLN1089 4.9 77.1 1.0
CA A:ARG1085 4.9 81.8 1.0

Calcium binding site 10 out of 88 in 8em7

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Calcium binding site 10 out of 88 in the Cryo-Em Structure of LRP2 at pH 5.2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Cryo-Em Structure of LRP2 at pH 5.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4764

b:30.0
occ:1.00
OE2 A:GLU1141 2.2 79.0 1.0
OD2 A:ASP1134 2.2 81.5 1.0
O A:TRP1127 2.3 83.8 1.0
OD1 A:ASP1130 2.3 76.8 1.0
O A:ASP1132 2.4 74.1 1.0
OD2 A:ASP1130 2.5 76.8 1.0
CG A:ASP1130 2.6 76.8 1.0
OD2 A:ASP1140 3.1 78.1 1.0
CG A:ASP1134 3.3 81.5 1.0
CD A:GLU1141 3.4 79.0 1.0
C A:TRP1127 3.5 83.8 1.0
C A:ASP1132 3.6 74.1 1.0
N A:ASP1130 3.9 76.8 1.0
CB A:ASP1130 4.0 76.8 1.0
CG A:ASP1140 4.0 78.1 1.0
N A:ASP1134 4.1 81.5 1.0
CB A:ASP1134 4.2 81.5 1.0
CA A:TRP1127 4.2 83.8 1.0
CG A:GLU1141 4.2 79.0 1.0
OD1 A:ASP1134 4.2 81.5 1.0
N A:ASP1132 4.2 74.1 1.0
CB A:TRP1127 4.2 83.8 1.0
CA A:ASP1132 4.3 74.1 1.0
OE1 A:GLU1141 4.3 79.0 1.0
CA A:ASP1130 4.3 76.8 1.0
NZ A:LYS1430 4.3 57.8 1.0
C A:VAL1128 4.4 83.5 1.0
C A:ASP1130 4.4 76.8 1.0
CB A:ASP1132 4.4 74.1 1.0
O A:ASP1130 4.4 76.8 1.0
O A:VAL1128 4.5 83.5 1.0
N A:CYS1129 4.5 80.5 1.0
CB A:ASP1140 4.6 78.1 1.0
N A:VAL1128 4.6 83.5 1.0
C A:CYS1129 4.6 80.5 1.0
N A:ASN1133 4.7 76.0 1.0
CA A:ASP1134 4.8 81.5 1.0
CA A:VAL1128 4.8 83.5 1.0
CA A:ASN1133 4.8 76.0 1.0
CA A:CYS1129 4.9 80.5 1.0
C A:ASN1133 5.0 76.0 1.0
OD1 A:ASP1140 5.0 78.1 1.0

Reference:

A.Beenken, G.Cerutti, A.W.Fitzpatrick, J.Barasch, L.Shapiro. Cryo-Em Structure of LRP2 Cell(Cambridge,Mass.) 2023.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2023.01.016
Page generated: Tue Apr 4 19:37:51 2023

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