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Calcium in PDB 8g30: N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules

Calcium Binding Sites:

The binding sites of Calcium atom in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules (pdb code 8g30). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules, PDB code: 8g30:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 8g30

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Calcium binding site 1 out of 5 in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Ca501

b:83.6
occ:1.00
 O M:HIS347 2.2 64.2 1.0
O M:GLY345 2.2 72.9 1.0
OD2 M:ASP324 2.3 108.0 1.0
O M:ASP293 2.4 75.9 1.0
O M:GLY297 2.4 99.7 1.0
CG M:ASP324 3.4 109.9 1.0
C M:GLY345 3.4 95.2 1.0
C M:HIS347 3.5 63.2 1.0
C M:GLY297 3.5 77.2 1.0
C M:ASP293 3.6 79.3 1.0
CA M:GLY348 4.0 79.9 1.0
CA M:SER298 4.0 80.8 1.0
N M:SER298 4.1 97.3 1.0
O M:GLY346 4.1 74.5 1.0
C M:GLY346 4.2 82.6 1.0
N M:GLY348 4.2 62.9 1.0
CB M:ASP324 4.2 109.4 1.0
OD1 M:ASP324 4.3 120.1 1.0
CA M:GLY345 4.3 103.3 1.0
O M:GLU344 4.3 174.5 1.0
N M:HIS347 4.4 85.4 1.0
N M:GLY346 4.4 117.0 1.0
N M:ASN294 4.5 86.0 1.0
CA M:ASN294 4.5 81.3 1.0
CA M:ASP293 4.5 80.5 1.0
CA M:HIS347 4.6 75.0 1.0
CA M:GLY346 4.6 108.7 1.0
CB M:ASP293 4.6 99.4 1.0
CB M:SER298 4.7 71.0 1.0
CA M:GLY297 4.7 82.4 1.0
C M:ASN294 4.7 96.0 1.0
N M:ASP293 4.7 86.9 1.0
N M:GLY297 4.7 100.9 1.0
O M:PRO326 4.8 82.1 1.0
OD1 M:ASP293 4.9 69.3 1.0
N M:TRP295 5.0 106.3 1.0

Calcium binding site 2 out of 5 in 8g30

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Calcium binding site 2 out of 5 in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules within 5.0Å range:

Calcium binding site 3 out of 5 in 8g30

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Calcium binding site 3 out of 5 in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Ca2000

b:83.6
occ:1.00
 O N:GLY345 2.2 77.3 1.0
O N:HIS347 2.2 66.4 1.0
OD2 N:ASP324 2.3 105.7 1.0
O N:ASP293 2.4 78.3 1.0
O N:GLY297 2.4 96.0 1.0
C N:GLY345 3.4 95.9 1.0
CG N:ASP324 3.5 111.0 1.0
C N:HIS347 3.5 64.0 1.0
C N:GLY297 3.5 76.6 1.0
C N:ASP293 3.6 80.5 1.0
CA N:SER298 4.0 81.6 1.0
CA N:GLY348 4.0 79.8 1.0
O N:GLY346 4.1 76.5 1.0
N N:SER298 4.1 98.3 1.0
C N:GLY346 4.1 80.9 1.0
N N:GLY348 4.2 64.0 1.0
CA N:GLY345 4.2 102.8 1.0
CB N:ASP324 4.2 109.3 1.0
O N:GLU344 4.3 172.6 1.0
OD1 N:ASP324 4.3 120.9 1.0
N N:GLY346 4.4 117.9 1.0
N N:HIS347 4.4 83.8 1.0
N N:ASN294 4.5 87.6 1.0
CA N:ASN294 4.5 85.4 1.0
CA N:ASP293 4.5 81.8 1.0
CA N:HIS347 4.6 74.4 1.0
CA N:GLY346 4.6 107.7 1.0
CB N:ASP293 4.7 100.0 1.0
CB N:SER298 4.7 70.7 1.0
CA N:GLY297 4.7 82.2 1.0
C N:ASN294 4.7 100.3 1.0
N N:GLY297 4.7 100.8 1.0
N N:ASP293 4.7 87.2 1.0
O N:PRO326 4.8 80.8 1.0
OD1 N:ASP293 4.9 68.5 1.0

Calcium binding site 4 out of 5 in 8g30

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Calcium binding site 4 out of 5 in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Ca2000

b:83.5
occ:1.00
 O O:GLY345 2.2 77.1 1.0
O O:HIS347 2.2 66.3 1.0
OD2 O:ASP324 2.3 105.5 1.0
O O:ASP293 2.4 78.4 1.0
O O:GLY297 2.4 95.9 1.0
C O:GLY345 3.4 96.1 1.0
CG O:ASP324 3.5 111.1 1.0
C O:HIS347 3.5 64.1 1.0
C O:GLY297 3.5 76.5 1.0
C O:ASP293 3.6 80.7 1.0
CA O:SER298 4.0 81.5 1.0
CA O:GLY348 4.0 79.7 1.0
O O:GLY346 4.1 76.8 1.0
N O:SER298 4.1 98.2 1.0
C O:GLY346 4.1 81.1 1.0
N O:GLY348 4.2 64.0 1.0
CA O:GLY345 4.2 102.6 1.0
CB O:ASP324 4.2 109.4 1.0
O O:GLU344 4.3 172.6 1.0
OD1 O:ASP324 4.3 120.8 1.0
N O:GLY346 4.4 118.3 1.0
N O:HIS347 4.4 83.8 1.0
N O:ASN294 4.5 87.7 1.0
CA O:ASN294 4.5 85.4 1.0
CA O:ASP293 4.5 81.9 1.0
CA O:HIS347 4.6 74.4 1.0
CA O:GLY346 4.6 107.9 1.0
CB O:ASP293 4.7 100.2 1.0
CB O:SER298 4.7 70.9 1.0
CA O:GLY297 4.7 82.2 1.0
C O:ASN294 4.7 100.3 1.0
N O:GLY297 4.7 100.7 1.0
N O:ASP293 4.7 87.3 1.0
O O:PRO326 4.8 80.5 1.0
OD1 O:ASP293 4.9 68.6 1.0

Calcium binding site 5 out of 5 in 8g30

Go back to Calcium Binding Sites List in 8g30
Calcium binding site 5 out of 5 in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 4 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca2000

b:83.7
occ:1.00
 O P:GLY345 2.2 77.1 1.0
O P:HIS347 2.2 66.4 1.0
OD2 P:ASP324 2.3 105.3 1.0
O P:ASP293 2.4 78.2 1.0
O P:GLY297 2.4 96.0 1.0
C P:GLY345 3.4 95.9 1.0
CG P:ASP324 3.5 110.8 1.0
C P:HIS347 3.5 64.1 1.0
C P:GLY297 3.5 76.5 1.0
C P:ASP293 3.6 80.7 1.0
CA P:SER298 4.0 81.5 1.0
CA P:GLY348 4.0 79.8 1.0
O P:GLY346 4.1 76.9 1.0
N P:SER298 4.1 98.0 1.0
C P:GLY346 4.1 80.9 1.0
N P:GLY348 4.2 64.0 1.0
CA P:GLY345 4.2 102.8 1.0
CB P:ASP324 4.2 109.3 1.0
O P:GLU344 4.3 172.5 1.0
OD1 P:ASP324 4.3 120.5 1.0
N P:GLY346 4.4 118.2 1.0
N P:HIS347 4.4 83.8 1.0
N P:ASN294 4.5 87.6 1.0
CA P:ASN294 4.5 85.3 1.0
CA P:ASP293 4.5 82.0 1.0
CA P:HIS347 4.6 74.5 1.0
CA P:GLY346 4.6 107.9 1.0
CB P:ASP293 4.7 100.1 1.0
CB P:SER298 4.7 70.7 1.0
CA P:GLY297 4.7 82.3 1.0
C P:ASN294 4.7 100.1 1.0
N P:GLY297 4.7 100.9 1.0
N P:ASP293 4.7 87.4 1.0
O P:PRO326 4.8 80.6 1.0
OD1 P:ASP293 4.9 68.5 1.0

Reference:

C.Momont, H.V.Dang, F.Zatta, K.Hauser, G.Snell, D.Corti, M.S.Pizzuto. A Pan-Influenza Antibody Inhibiting Neuraminidase Via Receptor Mimicry Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06136-Y
Page generated: Fri Jul 19 09:06:13 2024

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