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Calcium in PDB 8g3p: N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules

Calcium Binding Sites:

The binding sites of Calcium atom in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules (pdb code 8g3p). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules, PDB code: 8g3p:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 8g3p

Go back to Calcium Binding Sites List in 8g3p
Calcium binding site 1 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca2000

b:37.9
occ:1.00
 O B:ASP293 2.3 37.3 1.0
O B:HIS347 2.3 31.8 1.0
OD2 B:ASP324 2.3 52.5 1.0
O B:GLY297 2.3 48.0 1.0
O B:GLY345 2.4 44.7 1.0
C B:GLY345 3.5 41.2 1.0
C B:GLY297 3.5 40.9 1.0
CG B:ASP324 3.5 42.0 1.0
C B:HIS347 3.5 35.4 1.0
C B:ASP293 3.5 34.7 1.0
O B:GLU344 3.9 59.0 1.0
CA B:GLY348 4.1 24.2 1.0
CA B:GLY345 4.1 41.7 1.0
O B:GLY346 4.1 41.3 1.0
CA B:SER298 4.2 38.1 1.0
C B:GLY346 4.2 39.2 1.0
N B:SER298 4.2 38.1 1.0
N B:GLY348 4.3 30.1 1.0
CA B:ASN294 4.3 40.6 1.0
OD1 B:ASP324 4.3 42.8 1.0
N B:ASN294 4.3 37.2 1.0
CB B:ASP324 4.4 40.9 1.0
N B:GLY346 4.5 42.8 1.0
C B:ASN294 4.5 41.0 1.0
N B:HIS347 4.5 41.9 1.0
CA B:ASP293 4.6 34.1 1.0
N B:TRP295 4.6 44.6 1.0
CA B:GLY297 4.6 45.9 1.0
N B:GLY297 4.7 44.6 1.0
CA B:HIS347 4.7 40.9 1.0
CB B:ASP293 4.8 35.4 1.0
CA B:GLY346 4.8 41.7 1.0
N B:ASP293 4.8 36.8 1.0
OD1 B:ASP293 4.8 46.8 1.0
CB B:SER298 4.9 40.3 1.0
O B:PRO326 4.9 46.8 1.0
C B:GLU344 4.9 45.3 1.0

Calcium binding site 2 out of 5 in 8g3p

Go back to Calcium Binding Sites List in 8g3p
Calcium binding site 2 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:37.9
occ:1.00
 O A:ASP293 2.3 37.3 1.0
O A:HIS347 2.3 31.8 1.0
OD2 A:ASP324 2.3 52.5 1.0
O A:GLY297 2.3 48.0 1.0
O A:GLY345 2.4 44.7 1.0
C A:GLY345 3.5 41.2 1.0
C A:GLY297 3.5 41.0 1.0
C A:HIS347 3.5 35.3 1.0
CG A:ASP324 3.5 42.0 1.0
C A:ASP293 3.6 34.7 1.0
O A:GLU344 3.9 59.0 1.0
CA A:GLY348 4.1 24.2 1.0
CA A:GLY345 4.1 41.8 1.0
O A:GLY346 4.1 41.3 1.0
CA A:SER298 4.2 38.1 1.0
C A:GLY346 4.2 39.1 1.0
N A:SER298 4.2 38.1 1.0
N A:GLY348 4.2 30.1 1.0
CA A:ASN294 4.3 40.6 1.0
OD1 A:ASP324 4.3 42.7 1.0
N A:ASN294 4.4 37.2 1.0
CB A:ASP324 4.4 40.9 1.0
N A:GLY346 4.5 42.8 1.0
C A:ASN294 4.5 41.0 1.0
N A:HIS347 4.5 41.9 1.0
CA A:ASP293 4.6 34.1 1.0
N A:TRP295 4.6 44.6 1.0
CA A:GLY297 4.6 45.9 1.0
N A:GLY297 4.7 44.6 1.0
CA A:HIS347 4.7 40.9 1.0
CB A:ASP293 4.8 35.4 1.0
CA A:GLY346 4.8 41.7 1.0
N A:ASP293 4.8 36.8 1.0
OD1 A:ASP293 4.8 46.8 1.0
CB A:SER298 4.8 40.3 1.0
O A:PRO326 4.9 46.8 1.0
C A:GLU344 4.9 45.3 1.0

Calcium binding site 3 out of 5 in 8g3p

Go back to Calcium Binding Sites List in 8g3p
Calcium binding site 3 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:224.8
occ:1.00
 OD2 D:ASP113 4.6 89.9 1.0
OD1 D:ASP113 4.7 68.0 1.0
OD2 E:ASP113 4.7 89.8 1.0
OD1 E:ASP113 4.9 67.8 1.0
OD2 A:ASP113 4.9 90.3 1.0
OD1 A:ASP113 5.0 68.6 1.0
OD2 B:ASP113 5.0 90.0 1.0

Calcium binding site 4 out of 5 in 8g3p

Go back to Calcium Binding Sites List in 8g3p
Calcium binding site 4 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca2000

b:37.9
occ:1.00
 O D:ASP293 2.3 37.3 1.0
O D:HIS347 2.3 31.8 1.0
OD2 D:ASP324 2.3 52.5 1.0
O D:GLY297 2.3 48.0 1.0
O D:GLY345 2.4 44.7 1.0
C D:GLY345 3.5 41.2 1.0
C D:GLY297 3.5 41.0 1.0
C D:HIS347 3.5 35.3 1.0
CG D:ASP324 3.5 42.0 1.0
C D:ASP293 3.5 34.7 1.0
O D:GLU344 3.9 59.1 1.0
CA D:GLY348 4.1 24.2 1.0
CA D:GLY345 4.1 41.7 1.0
O D:GLY346 4.1 41.3 1.0
CA D:SER298 4.2 38.1 1.0
C D:GLY346 4.2 39.1 1.0
N D:SER298 4.2 38.1 1.0
N D:GLY348 4.2 30.1 1.0
CA D:ASN294 4.3 40.6 1.0
OD1 D:ASP324 4.3 42.8 1.0
N D:ASN294 4.3 37.2 1.0
CB D:ASP324 4.4 40.9 1.0
N D:GLY346 4.5 42.8 1.0
C D:ASN294 4.5 41.0 1.0
N D:HIS347 4.5 41.9 1.0
CA D:ASP293 4.6 34.1 1.0
N D:TRP295 4.6 44.6 1.0
CA D:GLY297 4.6 45.9 1.0
N D:GLY297 4.7 44.6 1.0
CA D:HIS347 4.7 40.9 1.0
CB D:ASP293 4.8 35.4 1.0
CA D:GLY346 4.8 41.7 1.0
N D:ASP293 4.8 36.8 1.0
OD1 D:ASP293 4.8 46.8 1.0
CB D:SER298 4.9 40.3 1.0
O D:PRO326 4.9 46.8 1.0
C D:GLU344 4.9 45.3 1.0

Calcium binding site 5 out of 5 in 8g3p

Go back to Calcium Binding Sites List in 8g3p
Calcium binding site 5 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI9 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca2000

b:37.9
occ:1.00
 O E:ASP293 2.3 37.3 1.0
O E:HIS347 2.3 31.8 1.0
OD2 E:ASP324 2.3 52.5 1.0
O E:GLY297 2.3 48.0 1.0
O E:GLY345 2.4 44.7 1.0
C E:GLY345 3.5 41.1 1.0
C E:GLY297 3.5 40.9 1.0
CG E:ASP324 3.5 42.0 1.0
C E:HIS347 3.5 35.4 1.0
C E:ASP293 3.5 34.7 1.0
O E:GLU344 3.9 59.0 1.0
CA E:GLY348 4.1 24.2 1.0
CA E:GLY345 4.1 41.7 1.0
O E:GLY346 4.1 41.3 1.0
CA E:SER298 4.2 38.1 1.0
C E:GLY346 4.2 39.1 1.0
N E:SER298 4.2 38.1 1.0
N E:GLY348 4.3 30.1 1.0
CA E:ASN294 4.3 40.6 1.0
OD1 E:ASP324 4.3 42.8 1.0
N E:ASN294 4.3 37.3 1.0
CB E:ASP324 4.4 41.0 1.0
N E:GLY346 4.5 42.8 1.0
C E:ASN294 4.5 41.0 1.0
N E:HIS347 4.5 41.9 1.0
CA E:ASP293 4.6 34.1 1.0
N E:TRP295 4.6 44.6 1.0
CA E:GLY297 4.6 45.9 1.0
N E:GLY297 4.7 44.6 1.0
CA E:HIS347 4.7 40.9 1.0
CB E:ASP293 4.8 35.4 1.0
CA E:GLY346 4.8 41.7 1.0
N E:ASP293 4.8 36.8 1.0
OD1 E:ASP293 4.8 46.8 1.0
CB E:SER298 4.9 40.2 1.0
O E:PRO326 4.9 46.7 1.0
C E:GLU344 4.9 45.3 1.0

Reference:

C.Momont, H.V.Dang, F.Zatta, K.Hauser, G.Snell, D.Corti, M.S.Pizzuto. A Pan-Influenza Antibody Inhibiting Neuraminidase Via Receptor Mimicry Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06136-Y
Page generated: Fri Jul 19 09:08:05 2024

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