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Calcium in PDB 8g3v: N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules

Calcium Binding Sites:

The binding sites of Calcium atom in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules (pdb code 8g3v). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules, PDB code: 8g3v:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 8g3v

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Calcium binding site 1 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca1103

b:32.4
occ:1.00
 O G:ASP293 2.3 38.0 1.0
O G:GLY345 2.3 41.3 1.0
OD2 G:ASP324 2.3 58.0 1.0
O G:HIS347 2.4 28.7 1.0
O G:GLY297 2.4 52.3 1.0
C G:GLY345 3.4 38.8 1.0
C G:ASP293 3.5 33.1 1.0
CG G:ASP324 3.5 49.4 1.0
C G:GLY297 3.5 47.7 1.0
C G:HIS347 3.6 33.0 1.0
CA G:GLY348 4.0 27.3 1.0
CA G:GLY345 4.1 40.6 1.0
O G:GLY346 4.1 43.8 1.0
C G:GLY346 4.2 43.7 1.0
N G:SER298 4.2 44.1 1.0
CA G:ASN294 4.2 34.7 1.0
N G:GLY348 4.2 32.0 1.0
O G:GLU344 4.2 46.7 1.0
N G:ASN294 4.3 34.8 1.0
CA G:SER298 4.3 37.4 1.0
CB G:ASP324 4.3 45.1 1.0
OD1 G:ASP324 4.3 57.9 1.0
N G:GLY346 4.3 35.1 1.0
C G:ASN294 4.4 40.6 1.0
CA G:ASP293 4.5 38.6 1.0
N G:HIS347 4.5 39.7 1.0
N G:TRP295 4.6 43.9 1.0
CA G:GLY297 4.6 44.7 1.0
N G:GLY297 4.6 46.6 1.0
CA G:GLY346 4.6 41.0 1.0
CB G:ASP293 4.7 45.9 1.0
CA G:HIS347 4.7 36.4 1.0
OD1 G:ASP293 4.7 43.3 1.0
N G:ASP293 4.8 37.7 1.0
O G:ASN294 5.0 27.8 1.0

Calcium binding site 2 out of 5 in 8g3v

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Calcium binding site 2 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca1104

b:190.6
occ:1.00
 OD2 J:ASP113 4.3 59.3 1.0
OD2 G:ASP113 4.3 60.8 1.0
OD2 H:ASP113 4.3 60.8 1.0
OD2 I:ASP113 4.3 60.9 1.0

Calcium binding site 3 out of 5 in 8g3v

Go back to Calcium Binding Sites List in 8g3v
Calcium binding site 3 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca1103

b:32.3
occ:1.00
 O H:ASP293 2.3 38.0 1.0
O H:GLY345 2.3 41.4 1.0
OD2 H:ASP324 2.3 58.0 1.0
O H:HIS347 2.4 28.8 1.0
O H:GLY297 2.4 52.4 1.0
C H:GLY345 3.4 38.9 1.0
C H:ASP293 3.5 33.1 1.0
CG H:ASP324 3.5 49.4 1.0
C H:GLY297 3.5 47.7 1.0
C H:HIS347 3.6 33.0 1.0
CA H:GLY348 4.0 27.3 1.0
CA H:GLY345 4.1 40.7 1.0
O H:GLY346 4.1 43.8 1.0
C H:GLY346 4.2 43.7 1.0
N H:SER298 4.2 44.1 1.0
CA H:ASN294 4.2 34.6 1.0
O H:GLU344 4.2 46.8 1.0
N H:GLY348 4.2 32.0 1.0
N H:ASN294 4.3 34.7 1.0
CA H:SER298 4.3 37.5 1.0
CB H:ASP324 4.3 45.1 1.0
OD1 H:ASP324 4.3 58.0 1.0
N H:GLY346 4.3 35.1 1.0
C H:ASN294 4.4 40.4 1.0
CA H:ASP293 4.5 38.5 1.0
N H:HIS347 4.5 39.7 1.0
N H:TRP295 4.6 43.9 1.0
CA H:GLY297 4.6 44.7 1.0
N H:GLY297 4.6 46.6 1.0
CA H:GLY346 4.6 41.0 1.0
CB H:ASP293 4.7 45.9 1.0
CA H:HIS347 4.7 36.4 1.0
OD1 H:ASP293 4.7 43.3 1.0
N H:ASP293 4.8 37.7 1.0
O H:ASN294 5.0 27.7 1.0

Calcium binding site 4 out of 5 in 8g3v

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Calcium binding site 4 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Ca1103

b:32.3
occ:1.00
 O I:ASP293 2.3 38.0 1.0
O I:GLY345 2.3 41.3 1.0
OD2 I:ASP324 2.3 58.0 1.0
O I:HIS347 2.4 28.8 1.0
O I:GLY297 2.4 52.3 1.0
C I:GLY345 3.4 38.9 1.0
C I:ASP293 3.5 33.1 1.0
CG I:ASP324 3.5 49.4 1.0
C I:GLY297 3.5 47.7 1.0
C I:HIS347 3.6 33.0 1.0
CA I:GLY348 4.0 27.3 1.0
CA I:GLY345 4.1 40.6 1.0
O I:GLY346 4.1 43.9 1.0
C I:GLY346 4.2 43.8 1.0
N I:SER298 4.2 44.1 1.0
CA I:ASN294 4.2 34.8 1.0
N I:GLY348 4.2 32.0 1.0
O I:GLU344 4.2 46.8 1.0
N I:ASN294 4.3 34.8 1.0
CA I:SER298 4.3 37.4 1.0
CB I:ASP324 4.3 45.1 1.0
OD1 I:ASP324 4.3 58.0 1.0
N I:GLY346 4.3 35.1 1.0
C I:ASN294 4.4 40.6 1.0
CA I:ASP293 4.5 38.6 1.0
N I:HIS347 4.5 39.8 1.0
N I:TRP295 4.6 43.9 1.0
CA I:GLY297 4.6 44.8 1.0
N I:GLY297 4.6 46.7 1.0
CA I:GLY346 4.6 41.0 1.0
CB I:ASP293 4.7 45.9 1.0
CA I:HIS347 4.7 36.5 1.0
OD1 I:ASP293 4.7 43.3 1.0
N I:ASP293 4.8 37.7 1.0
O I:ASN294 5.0 27.8 1.0

Calcium binding site 5 out of 5 in 8g3v

Go back to Calcium Binding Sites List in 8g3v
Calcium binding site 5 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 4 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Ca1103

b:32.4
occ:1.00
 O J:ASP293 2.3 38.1 1.0
O J:GLY345 2.3 41.2 1.0
OD2 J:ASP324 2.3 58.0 1.0
O J:HIS347 2.3 28.7 1.0
O J:GLY297 2.4 52.4 1.0
C J:GLY345 3.4 38.8 1.0
C J:ASP293 3.5 33.1 1.0
CG J:ASP324 3.5 49.3 1.0
C J:GLY297 3.5 47.7 1.0
C J:HIS347 3.6 33.0 1.0
CA J:GLY348 4.0 27.4 1.0
CA J:GLY345 4.1 40.7 1.0
O J:GLY346 4.1 44.0 1.0
C J:GLY346 4.2 43.8 1.0
N J:SER298 4.2 44.1 1.0
CA J:ASN294 4.2 34.7 1.0
N J:GLY348 4.2 32.1 1.0
O J:GLU344 4.2 46.8 1.0
N J:ASN294 4.3 34.8 1.0
CA J:SER298 4.3 37.4 1.0
CB J:ASP324 4.3 45.0 1.0
OD1 J:ASP324 4.3 57.9 1.0
N J:GLY346 4.3 35.2 1.0
C J:ASN294 4.4 40.5 1.0
CA J:ASP293 4.5 38.6 1.0
N J:HIS347 4.5 39.8 1.0
N J:TRP295 4.6 43.9 1.0
CA J:GLY297 4.6 44.8 1.0
N J:GLY297 4.6 46.7 1.0
CA J:GLY346 4.6 41.0 1.0
CB J:ASP293 4.7 45.9 1.0
CA J:HIS347 4.7 36.5 1.0
OD1 J:ASP293 4.7 43.2 1.0
N J:ASP293 4.8 37.7 1.0
O J:ASN294 5.0 27.7 1.0

Reference:

C.Momont, H.V.Dang, F.Zatta, K.Hauser, G.Snell, D.Corti, M.S.Pizzuto. A Pan-Influenza Antibody Inhibiting Neuraminidase Via Receptor Mimicry Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06136-Y
Page generated: Fri Jul 19 09:09:05 2024

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