Atomistry » Calcium » PDB 8fvp-8gqb » 8g3z
Atomistry »
  Calcium »
    PDB 8fvp-8gqb »
      8g3z »

Calcium in PDB 8g3z: Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules

Calcium Binding Sites:

The binding sites of Calcium atom in the Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules (pdb code 8g3z). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules, PDB code: 8g3z:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 8g3z

Go back to Calcium Binding Sites List in 8g3z
Calcium binding site 1 out of 5 in the Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:36.6
occ:1.00
 O A:ASP293 2.5 46.8 1.0
O A:GLY346 2.5 39.8 1.0
O A:THR297 2.5 41.7 1.0
O A:GLY344 2.6 44.3 1.0
OD2 A:ASP324 2.6 49.6 1.0
CG A:ASP324 3.4 49.0 1.0
C A:ASP293 3.6 44.1 1.0
C A:THR297 3.7 42.3 1.0
C A:GLY344 3.7 45.7 1.0
C A:GLY346 3.7 38.9 1.0
CA A:GLY347 4.1 37.3 1.0
OD1 A:ASP324 4.1 48.4 1.0
CB A:ASP324 4.2 48.8 1.0
CA A:ALA298 4.3 43.1 1.0
CA A:GLY344 4.3 48.8 1.0
N A:ALA298 4.4 44.7 1.0
N A:GLY347 4.4 38.5 1.0
CA A:ASP293 4.4 41.7 1.0
CB A:ASP293 4.5 41.2 1.0
N A:ASP293 4.5 41.8 1.0
N A:ASN294 4.6 47.7 1.0
C A:SER345 4.6 45.8 1.0
CA A:ASN294 4.7 49.8 1.0
N A:THR297 4.7 43.2 1.0
N A:GLY346 4.7 43.7 1.0
O A:SER345 4.7 46.6 1.0
N A:SER345 4.8 46.9 1.0
O A:PRO326 4.8 45.7 1.0
CA A:THR297 4.8 42.5 1.0
CA A:GLY346 4.9 40.7 1.0
OD1 A:ASP293 4.9 44.6 1.0

Calcium binding site 2 out of 5 in 8g3z

Go back to Calcium Binding Sites List in 8g3z
Calcium binding site 2 out of 5 in the Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca504

b:96.5
occ:1.00
 OE2 D:GLU168 2.6 59.2 1.0
OE1 A:GLU168 2.7 58.6 1.0
OE2 B:GLU168 2.8 67.5 1.0
OE1 C:GLU168 2.8 78.1 1.0
CD D:GLU168 3.7 58.1 1.0
CD A:GLU168 3.7 58.3 1.0
CD B:GLU168 3.7 67.4 1.0
CD C:GLU168 3.7 70.7 1.0
OE1 B:GLU168 3.9 70.1 1.0
OE2 C:GLU168 4.0 74.9 1.0
OE2 A:GLU168 4.1 63.4 1.0
OE1 D:GLU168 4.1 62.6 1.0
CG A:GLU168 4.9 51.7 1.0
CG D:GLU168 4.9 51.6 1.0
CG C:GLU168 5.0 60.4 1.0

Calcium binding site 3 out of 5 in 8g3z

Go back to Calcium Binding Sites List in 8g3z
Calcium binding site 3 out of 5 in the Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:36.7
occ:1.00
 O B:ASP293 2.5 47.1 1.0
O B:GLY346 2.5 39.5 1.0
O B:THR297 2.6 41.9 1.0
O B:GLY344 2.6 44.6 1.0
OD2 B:ASP324 2.6 50.5 1.0
CG B:ASP324 3.4 49.8 1.0
C B:ASP293 3.6 44.5 1.0
C B:GLY344 3.7 45.7 1.0
C B:THR297 3.7 42.6 1.0
C B:GLY346 3.7 38.5 1.0
CA B:GLY347 4.1 36.5 1.0
OD1 B:ASP324 4.1 49.1 1.0
CB B:ASP324 4.2 49.8 1.0
CA B:ALA298 4.3 43.5 1.0
CA B:GLY344 4.3 49.1 1.0
N B:ALA298 4.4 45.1 1.0
N B:GLY347 4.4 38.0 1.0
CA B:ASP293 4.5 42.5 1.0
N B:ASN294 4.5 48.1 1.0
CB B:ASP293 4.6 42.1 1.0
N B:ASP293 4.6 42.2 1.0
C B:SER345 4.6 45.8 1.0
CA B:ASN294 4.7 49.5 1.0
OD1 B:ASP293 4.7 46.9 1.0
O B:SER345 4.7 46.1 1.0
N B:GLY346 4.7 43.9 1.0
N B:SER345 4.7 46.9 1.0
N B:THR297 4.8 43.1 1.0
O B:PRO326 4.8 49.0 1.0
CA B:THR297 4.8 42.1 1.0
CA B:GLY346 4.9 40.5 1.0
C B:ASN294 5.0 50.4 1.0

Calcium binding site 4 out of 5 in 8g3z

Go back to Calcium Binding Sites List in 8g3z
Calcium binding site 4 out of 5 in the Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca501

b:36.2
occ:1.00
 O C:ASP293 2.4 48.5 1.0
O C:GLY346 2.5 41.1 1.0
O C:THR297 2.6 42.8 1.0
O C:GLY344 2.6 44.2 1.0
OD2 C:ASP324 2.6 52.0 1.0
CG C:ASP324 3.4 51.1 1.0
C C:ASP293 3.7 47.3 1.0
C C:GLY346 3.7 39.6 1.0
C C:THR297 3.7 43.9 1.0
C C:GLY344 3.7 46.5 1.0
CA C:GLY347 4.1 37.0 1.0
OD1 C:ASP324 4.1 49.3 1.0
CB C:ASP324 4.2 51.2 1.0
CA C:ALA298 4.3 44.8 1.0
CA C:GLY344 4.4 49.5 1.0
N C:GLY347 4.4 39.0 1.0
N C:ALA298 4.4 46.5 1.0
CA C:ASP293 4.5 45.7 1.0
N C:ASP293 4.5 44.9 1.0
CB C:ASP293 4.6 44.4 1.0
N C:ASN294 4.6 51.6 1.0
CA C:ASN294 4.6 53.0 1.0
C C:SER345 4.6 46.8 1.0
OD1 C:ASP293 4.7 49.7 1.0
N C:GLY346 4.7 44.7 1.0
N C:THR297 4.7 44.6 1.0
N C:SER345 4.8 48.0 1.0
O C:SER345 4.8 46.9 1.0
O C:PRO326 4.8 52.9 1.0
CA C:GLY346 4.8 41.3 1.0
CA C:THR297 4.8 44.2 1.0

Calcium binding site 5 out of 5 in 8g3z

Go back to Calcium Binding Sites List in 8g3z
Calcium binding site 5 out of 5 in the Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in Complex with 4 FNI17 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca501

b:36.5
occ:1.00
 O D:ASP293 2.5 47.2 1.0
O D:GLY346 2.5 40.5 1.0
O D:THR297 2.6 42.3 1.0
OD2 D:ASP324 2.6 49.7 1.0
O D:GLY344 2.6 44.2 1.0
CG D:ASP324 3.5 49.0 1.0
C D:ASP293 3.7 44.5 1.0
C D:THR297 3.7 43.1 1.0
C D:GLY346 3.7 39.5 1.0
C D:GLY344 3.8 46.9 1.0
CA D:GLY347 4.1 37.6 1.0
OD1 D:ASP324 4.2 48.2 1.0
CB D:ASP324 4.2 48.8 1.0
CA D:ALA298 4.2 43.4 1.0
N D:ALA298 4.4 45.2 1.0
N D:GLY347 4.4 38.8 1.0
CA D:GLY344 4.4 49.5 1.0
CA D:ASP293 4.5 42.1 1.0
CB D:ASP293 4.5 41.9 1.0
N D:ASP293 4.6 42.1 1.0
N D:ASN294 4.6 48.0 1.0
C D:SER345 4.7 47.6 1.0
CA D:ASN294 4.7 50.1 1.0
O D:SER345 4.7 48.2 1.0
N D:THR297 4.8 43.6 1.0
N D:GLY346 4.8 45.1 1.0
O D:PRO326 4.8 46.6 1.0
N D:SER345 4.8 49.0 1.0
O D:LYS343 4.8 54.4 1.0
OD1 D:ASP293 4.9 46.0 1.0
CA D:THR297 4.9 43.6 1.0
CA D:GLY346 4.9 41.9 1.0
C D:ASN294 5.0 50.7 1.0

Reference:

C.Momont, H.V.Dang, F.Zatta, K.Hauser, G.Snell, D.Corti, M.S.Pizzuto. A Pan-Influenza Antibody Inhibiting Neuraminidase Via Receptor Mimicry Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06136-Y
Page generated: Fri Jul 19 09:10:03 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy