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Calcium in PDB 8g40: N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules

Calcium Binding Sites:

The binding sites of Calcium atom in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules (pdb code 8g40). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules, PDB code: 8g40:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 8g40

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Calcium binding site 1 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca501

b:43.2
occ:1.00
 OD2 G:ASP324 2.3 60.2 1.0
O G:HIS347 2.3 31.4 1.0
O G:GLY345 2.3 34.5 1.0
O G:GLY297 2.3 45.3 1.0
O G:ASP293 2.4 29.7 1.0
C G:GLY345 3.4 34.6 1.0
CG G:ASP324 3.5 50.6 1.0
C G:GLY297 3.5 43.1 1.0
C G:HIS347 3.5 31.5 1.0
C G:ASP293 3.6 32.5 1.0
O G:GLU344 4.0 39.5 1.0
CA G:GLY348 4.1 30.4 1.0
CA G:GLY345 4.2 37.0 1.0
C G:GLY346 4.2 40.6 1.0
CA G:SER298 4.2 30.0 1.0
O G:GLY346 4.2 42.4 1.0
N G:SER298 4.2 36.2 1.0
N G:GLY348 4.3 31.7 1.0
OD1 G:ASP324 4.3 56.5 1.0
CA G:ASN294 4.4 37.9 1.0
CB G:ASP324 4.4 45.2 1.0
N G:GLY346 4.4 43.8 1.0
N G:HIS347 4.4 37.9 1.0
N G:ASN294 4.4 33.7 1.0
C G:ASN294 4.5 46.0 1.0
CA G:HIS347 4.6 34.7 1.0
CA G:ASP293 4.6 36.0 1.0
CA G:GLY297 4.7 43.8 1.0
CA G:GLY346 4.7 44.2 1.0
N G:TRP295 4.7 49.6 1.0
N G:GLY297 4.7 45.9 1.0
CB G:SER298 4.8 28.9 1.0
OD1 G:ASP293 4.9 43.0 1.0
CB G:ASP293 4.9 37.9 1.0
O G:PRO326 4.9 35.5 1.0
N G:ASP293 4.9 35.9 1.0
O G:ASN294 5.0 35.8 1.0
C G:GLU344 5.0 39.6 1.0

Calcium binding site 2 out of 5 in 8g40

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Calcium binding site 2 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca502

b:195.3
occ:1.00
 OD2 G:ASP113 4.6 85.8 1.0
OD2 J:ASP113 4.7 71.1 1.0
OD2 H:ASP113 4.8 74.4 1.0
OD2 I:ASP113 4.9 80.8 1.0
OD1 G:ASP113 5.0 68.4 1.0

Calcium binding site 3 out of 5 in 8g40

Go back to Calcium Binding Sites List in 8g40
Calcium binding site 3 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca2000

b:36.7
occ:1.00
 O H:HIS347 2.2 32.0 1.0
OD2 H:ASP324 2.3 54.0 1.0
O H:GLY345 2.3 33.7 1.0
O H:ASP293 2.4 26.5 1.0
O H:GLY297 2.4 51.2 1.0
C H:GLY345 3.4 36.9 1.0
C H:HIS347 3.5 31.9 1.0
CG H:ASP324 3.5 46.3 1.0
C H:GLY297 3.6 41.5 1.0
C H:ASP293 3.6 28.2 1.0
CA H:GLY348 4.0 25.5 1.0
O H:GLU344 4.1 67.9 1.0
CA H:GLY345 4.2 41.7 1.0
CA H:SER298 4.2 36.2 1.0
C H:GLY346 4.2 38.3 1.0
N H:GLY348 4.2 27.5 1.0
O H:GLY346 4.2 39.4 1.0
N H:SER298 4.3 39.7 1.0
CA H:ASN294 4.3 40.3 1.0
OD1 H:ASP324 4.3 52.2 1.0
CB H:ASP324 4.4 42.7 1.0
N H:HIS347 4.4 39.5 1.0
N H:GLY346 4.4 39.7 1.0
N H:ASN294 4.4 31.0 1.0
C H:ASN294 4.5 44.2 1.0
CA H:HIS347 4.6 35.5 1.0
CA H:ASP293 4.6 28.6 1.0
CA H:GLY346 4.7 40.4 1.0
N H:TRP295 4.7 51.5 1.0
CA H:GLY297 4.7 43.1 1.0
O H:PRO326 4.8 32.2 1.0
N H:GLY297 4.8 47.1 1.0
CB H:SER298 4.8 30.9 1.0
N H:ASP293 4.9 27.8 1.0
CB H:ASP293 4.9 28.2 1.0
OD1 H:ASP293 5.0 30.5 1.0

Calcium binding site 4 out of 5 in 8g40

Go back to Calcium Binding Sites List in 8g40
Calcium binding site 4 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Ca2000

b:36.9
occ:1.00
 O I:HIS347 2.2 29.6 1.0
O I:GLY345 2.3 44.3 1.0
OD2 I:ASP324 2.3 72.6 1.0
O I:GLY297 2.4 58.9 1.0
O I:ASP293 2.4 29.9 1.0
C I:GLY345 3.4 44.1 1.0
C I:HIS347 3.4 30.2 1.0
CG I:ASP324 3.5 56.8 1.0
C I:GLY297 3.6 48.0 1.0
C I:ASP293 3.6 30.7 1.0
CA I:GLY348 4.1 23.7 1.0
O I:GLY346 4.1 41.2 1.0
C I:GLY346 4.1 36.7 1.0
O I:GLU344 4.1 56.0 1.0
CA I:GLY345 4.1 46.3 1.0
CA I:SER298 4.2 36.1 1.0
N I:GLY348 4.2 27.2 1.0
N I:SER298 4.2 40.6 1.0
CA I:ASN294 4.3 35.4 1.0
N I:HIS347 4.3 34.3 1.0
OD1 I:ASP324 4.4 55.9 1.0
N I:GLY346 4.4 41.7 1.0
CB I:ASP324 4.4 53.0 1.0
N I:ASN294 4.4 32.7 1.0
CA I:HIS347 4.5 32.3 1.0
C I:ASN294 4.5 37.8 1.0
CA I:GLY346 4.6 38.7 1.0
CA I:ASP293 4.7 38.8 1.0
CA I:GLY297 4.7 50.4 1.0
N I:TRP295 4.7 37.3 1.0
N I:GLY297 4.8 53.7 1.0
CB I:SER298 4.8 33.7 1.0
O I:PRO326 4.8 41.4 1.0
N I:ASP293 4.9 42.0 1.0
CB I:ASP293 4.9 41.4 1.0
OD1 I:ASP293 4.9 38.7 1.0

Calcium binding site 5 out of 5 in 8g40

Go back to Calcium Binding Sites List in 8g40
Calcium binding site 5 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI19 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Ca2000

b:46.0
occ:1.00
 OD2 J:ASP324 2.2 67.9 1.0
O J:HIS347 2.3 45.2 1.0
O J:GLY345 2.3 47.9 1.0
O J:ASP293 2.4 39.2 1.0
O J:GLY297 2.4 58.4 1.0
C J:GLY345 3.4 51.1 1.0
CG J:ASP324 3.4 63.5 1.0
C J:HIS347 3.5 39.9 1.0
C J:GLY297 3.5 49.3 1.0
C J:ASP293 3.6 41.1 1.0
CA J:GLY348 4.0 37.1 1.0
O J:GLU344 4.1 64.6 1.0
O J:GLY346 4.1 46.7 1.0
C J:GLY346 4.1 45.4 1.0
CA J:SER298 4.2 45.0 1.0
CA J:GLY345 4.2 52.4 1.0
N J:SER298 4.2 47.9 1.0
N J:GLY348 4.2 35.1 1.0
OD1 J:ASP324 4.3 62.3 1.0
CB J:ASP324 4.3 60.7 1.0
CA J:ASN294 4.3 53.1 1.0
N J:HIS347 4.4 44.0 1.0
N J:GLY346 4.4 57.0 1.0
N J:ASN294 4.4 45.3 1.0
C J:ASN294 4.6 58.1 1.0
CA J:HIS347 4.6 41.6 1.0
CA J:ASP293 4.6 42.0 1.0
CA J:GLY346 4.7 55.1 1.0
CA J:GLY297 4.7 45.1 1.0
N J:TRP295 4.8 65.8 1.0
N J:GLY297 4.8 48.3 1.0
CB J:SER298 4.8 44.0 1.0
O J:PRO326 4.8 44.6 1.0
N J:ASP293 4.8 41.9 1.0
CB J:ASP293 4.9 44.1 1.0
OD1 J:ASP293 4.9 45.1 1.0

Reference:

C.Momont, H.V.Dang, F.Zatta, K.Hauser, G.Snell, D.Corti, M.S.Pizzuto. A Pan-Influenza Antibody Inhibiting Neuraminidase Via Receptor Mimicry Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06136-Y
Page generated: Fri Jul 19 09:10:25 2024

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