Calcium in PDB 8gkr: Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da

All present enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da:
2.7.7.7;

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da, PDB code: 8gkr was solved by H.Jung, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.95 / 2.78
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	97.907, 97.907, 81.008, 90, 90, 120
R / Rfree (%)	20 / 28.2

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Calcium atom in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da (pdb code 8gkr). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da, PDB code: 8gkr:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca507 b:77.5 occ:1.00 O10 A:B7P501 2.1 67.8 1.0 OD1 A:ASP13 2.3 52.4 1.0 OE2 A:GLU116 2.3 53.5 1.0 O3' P:DG8 2.7 59.8 1.0 OD2 A:ASP115 3.1 59.5 1.0 OD1 A:ASP115 3.2 54.1 1.0 CA A:CA508 3.4 59.2 1.0 CG A:ASP13 3.4 53.3 1.0 CD A:GLU116 3.5 49.7 1.0 CG A:ASP115 3.5 56.6 1.0 P09 A:B7P501 3.5 79.4 1.0 C3' P:DG8 3.7 55.6 1.0 OD2 A:ASP13 3.9 62.7 1.0 CG A:GLU116 4.1 49.1 1.0 O11 A:B7P501 4.1 70.7 1.0 O19 A:B7P501 4.1 72.0 1.0 C5' P:DG8 4.1 53.1 1.0 C4' P:DG8 4.1 53.2 1.0 O08 A:B7P501 4.1 71.0 1.0 CB A:GLU116 4.2 44.3 1.0 C07 A:B7P501 4.3 62.1 1.0 OE1 A:GLU116 4.5 51.6 1.0 CB A:ASP13 4.6 45.8 1.0 O12 A:B7P501 4.7 90.2 1.0 O A:ASP115 4.7 49.9 1.0 O15 A:B7P501 4.8 58.1 1.0 C A:ASP115 4.8 49.4 1.0 N A:GLU116 4.9 49.0 1.0 CB A:ASP115 4.9 53.8 1.0 O5' P:DG8 4.9 58.7 1.0 NZ A:LYS224 5.0 45.8 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca508 b:59.2 occ:1.00 O A:MET14 2.3 51.2 1.0 OD2 A:ASP115 2.3 59.5 1.0 OD2 A:ASP13 2.5 62.7 1.0 O15 A:B7P501 2.8 58.1 1.0 O19 A:B7P501 2.8 72.0 1.0 OD1 A:ASP13 2.8 52.4 1.0 CG A:ASP13 2.9 53.3 1.0 C A:MET14 2.9 47.4 1.0 O10 A:B7P501 3.1 67.8 1.0 CA A:CA507 3.4 77.5 1.0 N A:MET14 3.5 53.0 1.0 CG A:ASP115 3.6 56.6 1.0 P13 A:B7P501 3.6 81.9 1.0 P17 A:B7P501 3.7 85.0 1.0 O16 A:B7P501 3.7 75.3 1.0 N A:ASP15 3.7 47.5 1.0 CA A:MET14 3.7 49.6 1.0 C A:ASP13 4.0 45.8 1.0 O20 A:B7P501 4.1 63.3 1.0 CA A:ASP15 4.1 45.7 1.0 CB A:ASP13 4.2 45.8 1.0 P09 A:B7P501 4.2 79.4 1.0 O12 A:B7P501 4.2 90.2 1.0 OD1 A:ASP115 4.3 54.1 1.0 CB A:MET14 4.3 45.4 1.0 C07 A:B7P501 4.4 62.1 1.0 C A:ASP15 4.4 48.0 1.0 O A:ASP115 4.4 49.9 1.0 N A:CYS16 4.4 49.8 1.0 CA A:ASP13 4.5 42.9 1.0 O A:ASP13 4.5 43.2 1.0 CB A:ASP115 4.6 53.8 1.0 N A:PHE17 4.6 42.5 1.0 O08 A:B7P501 4.9 71.0 1.0 CB A:PHE17 5.0 45.5 1.0 O14 A:B7P501 5.0 67.4 1.0

H.Jung, H.Jung. N/A N/A.