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Calcium in PDB 8i40: Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa.

Enzymatic activity of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa.

All present enzymatic activity of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa.:
2.8.3.5;

Protein crystallography data

The structure of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa., PDB code: 8i40 was solved by K.Mochizuki, D.K.Inaoka, K.Fukuda, H.Kurasawa, K.Iyoda, U.Nakai, S.Harada, E.O.Balogun, M.Mazet, Y.Millerioux, F.Bringaud, M.Boshart, K.Hirayama, K.Kita, T.Shiba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.90 / 2.79
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.789, 165.146, 188.584, 90, 90, 90
R / Rfree (%) 22.3 / 28.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa. (pdb code 8i40). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa., PDB code: 8i40:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 8i40

Go back to Calcium Binding Sites List in 8i40
Calcium binding site 1 out of 4 in the Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca503

b:77.3
occ:1.00
O A:GLN211 3.0 40.9 1.0
OD1 A:ASP239 3.2 37.6 1.0
OD2 A:ASP239 3.4 40.5 1.0
CG A:ASP239 3.6 38.0 1.0
C A:GLN211 4.2 39.2 1.0
OE1 A:GLN211 4.7 50.3 1.0

Calcium binding site 2 out of 4 in 8i40

Go back to Calcium Binding Sites List in 8i40
Calcium binding site 2 out of 4 in the Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca701

b:74.7
occ:1.00
O B:GLN211 3.1 36.6 1.0
OD1 B:ASP239 3.1 36.0 1.0
OD2 B:ASP239 3.4 35.9 1.0
CG B:ASP239 3.6 36.2 1.0
C B:GLN211 4.3 36.2 1.0
O B:TYR237 4.7 31.5 1.0
O B:VAL236 4.9 31.5 1.0
O B:GLY210 4.9 33.1 1.0

Calcium binding site 3 out of 4 in 8i40

Go back to Calcium Binding Sites List in 8i40
Calcium binding site 3 out of 4 in the Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca502

b:68.8
occ:1.00
OD2 C:ASP239 3.0 47.5 1.0
O C:GLN211 3.1 39.9 1.0
OD1 C:ASP239 3.3 46.9 1.0
CG C:ASP239 3.6 46.0 1.0
O C:TYR237 4.3 34.1 1.0
C C:GLN211 4.3 39.9 1.0
O C:GLY210 4.4 37.5 1.0
O C:VAL236 4.6 30.3 1.0
ND1 D:HIS368 4.8 37.8 1.0
CA C:GLN211 5.0 40.9 1.0

Calcium binding site 4 out of 4 in 8i40

Go back to Calcium Binding Sites List in 8i40
Calcium binding site 4 out of 4 in the Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Coa. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca701

b:83.2
occ:1.00
O D:GLN211 2.8 43.0 1.0
OD1 D:ASP239 2.9 34.2 1.0
OD2 D:ASP239 3.3 35.9 1.0
CG D:ASP239 3.5 34.2 1.0
C D:GLN211 3.9 40.6 1.0
O D:GLY210 4.4 39.5 1.0
CG1 D:VAL213 4.5 37.2 1.0
CA D:GLN211 4.6 41.8 1.0
O D:TYR237 4.8 31.8 1.0
O D:VAL236 4.8 31.3 1.0
ND1 C:HIS368 4.9 38.3 1.0
N D:THR212 4.9 38.9 1.0

Reference:

K.Mochizuki, D.K.Inaoka, K.Fukuda, H.Kurasawa, K.Iyoda, U.Nakai, S.Harada, E.O.Balogun, M.Mazet, Y.Millerioux, F.Bringaud, M.Boshart, K.Hirayama, K.Kita, T.Shiba. Crystal Structure of Ligand Complexes of Asct From Trypanosoma Brucei and Molecular Mechanism in Comparison with Mammalian Scot. To Be Published.
Page generated: Fri Jul 19 09:34:39 2024

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