Calcium in PDB 8imx: Cryo-Em Structure of Gpi-T with A Chimeric Gpi-Anchored Protein

The structure of Cryo-Em Structure of Gpi-T with A Chimeric Gpi-Anchored Protein also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Calcium atom in the Cryo-Em Structure of Gpi-T with A Chimeric Gpi-Anchored Protein (pdb code 8imx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Structure of Gpi-T with A Chimeric Gpi-Anchored Protein, PDB code: 8imx:

Calcium binding site 1 out of 1 in the Cryo-Em Structure of Gpi-T with A Chimeric Gpi-Anchored Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Gpi-T with A Chimeric Gpi-Anchored Protein within 5.0Å range: probe atom residue distance (Å) B Occ K:Ca701 b:70.2 occ:1.00 O K:ILE82 2.3 79.4 1.0 OE2 K:GLU118 2.4 79.1 1.0 OD2 K:ASP120 2.6 71.5 1.0 O K:ASP79 2.6 86.2 1.0 CD K:GLU118 3.1 79.1 1.0 OD1 K:ASP120 3.2 71.5 1.0 CG K:ASP120 3.3 71.5 1.0 C K:ILE82 3.6 79.4 1.0 OE1 K:GLU118 3.6 79.1 1.0 C K:ASP79 3.8 86.2 1.0 CG K:GLU118 4.1 79.1 1.0 CB K:GLU118 4.1 79.1 1.0 O K:SER146 4.3 74.3 1.0 O K:GLU118 4.4 79.1 1.0 CA K:ILE82 4.4 79.4 1.0 N K:ILE82 4.4 79.4 1.0 CA K:SER80 4.5 86.2 1.0 N K:VAL83 4.5 71.8 1.0 N K:SER80 4.5 86.2 1.0 CA K:VAL83 4.6 71.8 1.0 CB K:ILE82 4.6 79.4 1.0 CB K:ASP120 4.7 71.5 1.0 C K:SER80 4.7 86.2 1.0 CA K:ASP79 4.7 86.2 1.0 N K:LEU84 4.8 68.2 1.0 OD1 K:ASP79 4.8 86.2 1.0 O K:SER80 4.9 86.2 1.0 CG2 K:ILE82 5.0 79.4 1.0 C K:GLU118 5.0 79.1 1.0

Y.Xu, T.Li, J.Hong, Q.Qu, D.Li. Structures of Substrates- and Products-Bound Glycosylphosphatidylinositol Transamidase Illuminate Gpi-Ap Biogenesis To Be Published.