Calcium in PDB 8imy: Cryo-Em Structure of Gpi-T (Inactive Mutant) with Gpi and PROULBP2, A Proprotein Substrate

The structure of Cryo-Em Structure of Gpi-T (Inactive Mutant) with Gpi and PROULBP2, A Proprotein Substrate also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Calcium atom in the Cryo-Em Structure of Gpi-T (Inactive Mutant) with Gpi and PROULBP2, A Proprotein Substrate (pdb code 8imy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Structure of Gpi-T (Inactive Mutant) with Gpi and PROULBP2, A Proprotein Substrate, PDB code: 8imy:

Calcium binding site 1 out of 1 in the Cryo-Em Structure of Gpi-T (Inactive Mutant) with Gpi and PROULBP2, A Proprotein Substrate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Gpi-T (Inactive Mutant) with Gpi and PROULBP2, A Proprotein Substrate within 5.0Å range: probe atom residue distance (Å) B Occ K:Ca701 b:32.9 occ:1.00 OE2 K:GLU118 2.5 44.9 1.0 O K:ILE82 2.5 39.4 1.0 OD2 K:ASP120 2.5 40.6 1.0 O K:ASP79 2.8 45.6 1.0 OD1 K:ASP120 2.9 40.6 1.0 CG K:ASP120 3.1 40.6 1.0 CD K:GLU118 3.6 44.9 1.0 C K:ILE82 3.7 39.4 1.0 CG K:GLU118 4.0 44.9 1.0 C K:ASP79 4.1 45.6 1.0 O K:SER146 4.3 44.7 1.0 OD1 K:ASP79 4.4 45.6 1.0 CA K:SER80 4.5 44.9 1.0 N K:ILE82 4.5 39.4 1.0 CB K:ASP120 4.6 40.6 1.0 N K:VAL83 4.6 35.2 1.0 CA K:VAL83 4.6 35.2 1.0 CA K:ILE82 4.6 39.4 1.0 OE1 K:GLU118 4.6 44.9 1.0 N K:SER80 4.7 44.9 1.0 C K:SER80 4.8 44.9 1.0 N K:LEU84 4.9 36.5 1.0 CB K:SER146 4.9 44.7 1.0 O K:GLU118 4.9 44.9 1.0 CB K:ILE82 5.0 39.4 1.0

Y.Xu, T.Li, J.Hong, Q.Qu, D.Li. Structures of Substrates- and Products-Bound Glycosylphosphatidylinositol Transamidase Illuminate Gpi-Ap Biogenesis To Be Published.