Calcium in PDB 8j86: Monkeypox Virus Dna Replication Holoenzyme F8, A22 and E4 Complex in A Dna Binding Form

All present enzymatic activity of Monkeypox Virus Dna Replication Holoenzyme F8, A22 and E4 Complex in A Dna Binding Form:
3.2.2.27;

The binding sites of Calcium atom in the Monkeypox Virus Dna Replication Holoenzyme F8, A22 and E4 Complex in A Dna Binding Form (pdb code 8j86). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Monkeypox Virus Dna Replication Holoenzyme F8, A22 and E4 Complex in A Dna Binding Form, PDB code: 8j86:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Monkeypox Virus Dna Replication Holoenzyme F8, A22 and E4 Complex in A Dna Binding Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Monkeypox Virus Dna Replication Holoenzyme F8, A22 and E4 Complex in A Dna Binding Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1101 b:64.2 occ:1.00 O A:TYR550 2.3 39.5 1.0 OD2 A:ASP753 2.4 33.4 1.0 N A:SER552 2.8 36.0 1.0 C A:TYR550 3.1 36.8 1.0 CG A:ASP753 3.5 41.4 1.0 CA A:SER552 3.6 26.2 1.0 N A:ASN551 3.7 34.3 1.0 C A:ASN551 3.7 38.0 1.0 CA A:ASN551 3.7 26.6 1.0 N A:LEU553 4.0 19.9 1.0 CA A:TYR550 4.1 26.6 1.0 CB A:ASP753 4.1 38.8 1.0 CB A:TYR550 4.3 29.1 1.0 OD2 A:ASP549 4.4 45.2 1.0 N A:TYR550 4.4 32.5 1.0 C A:SER552 4.4 17.5 1.0 OD1 A:ASP753 4.4 43.7 1.0 CG A:ASP549 4.7 43.2 1.0 O A:ASN551 4.8 43.5 1.0 CB A:SER552 4.9 27.5 1.0 OD1 A:ASP549 4.9 42.4 1.0

Calcium binding site 2 out of 3 in the Monkeypox Virus Dna Replication Holoenzyme F8, A22 and E4 Complex in A Dna Binding Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Monkeypox Virus Dna Replication Holoenzyme F8, A22 and E4 Complex in A Dna Binding Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1102 b:65.1 occ:1.00 CA A:CA1103 1.8 111.1 1.0 OD1 A:ASP166 3.2 58.1 1.0 O A:ILE167 3.7 37.3 1.0 OE2 A:GLU168 3.9 40.8 1.0 CE2 A:PHE267 4.1 35.3 1.0 CG A:ASP166 4.1 51.3 1.0 OD2 A:ASP166 4.1 48.5 1.0 OD1 A:ASP268 4.1 46.9 1.0 OD2 A:ASP268 4.3 44.2 1.0 CD2 A:PHE267 4.5 34.4 1.0 CG A:ASP268 4.6 41.6 1.0 CD A:GLU168 4.7 48.1 1.0 O A:PHE262 4.8 41.8 1.0 C A:ILE167 4.9 27.7 1.0 OE1 A:GLU168 5.0 50.9 1.0

Calcium binding site 3 out of 3 in the Monkeypox Virus Dna Replication Holoenzyme F8, A22 and E4 Complex in A Dna Binding Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Monkeypox Virus Dna Replication Holoenzyme F8, A22 and E4 Complex in A Dna Binding Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1103 b:111.1 occ:1.00 CA A:CA1102 1.8 65.1 1.0 OD2 A:ASP166 2.4 48.5 1.0 OD1 A:ASP166 2.5 58.1 1.0 CG A:ASP166 2.8 51.3 1.0 OE2 A:GLU168 3.8 40.8 1.0 CB A:ASP166 4.3 38.5 1.0 OD2 A:ASP268 4.3 44.2 1.0 OD2 A:ASP462 4.3 49.6 1.0 O A:ILE167 4.4 37.3 1.0 CG A:ASP462 4.5 43.9 1.0 O A:PHE262 4.6 41.8 1.0 CD2 A:LEU346 4.7 43.5 1.0 CB A:ASP462 4.7 40.2 1.0 CD A:GLU168 4.9 48.1 1.0 OD1 A:ASP268 5.0 46.9 1.0

Y.X.Xu, Y.Q.Wu, X.Y.Wu, Y.Y.Zhang, Y.X.Yang, D.Y.Li, B.Yang, K.Gao, Z.Y.Zhang, C.J.Dong. Structure of Dna Replication Machinery From Human Monkeypox Virus in Complex with A Dna Duplex To Be Published.