Calcium in PDB 8jx8: Rat Megalin Head
Other elements in 8jx8:
The structure of Rat Megalin Head also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Rat Megalin Head
(pdb code 8jx8). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Rat Megalin Head, PDB code: 8jx8:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 8jx8
Go back to
Calcium Binding Sites List in 8jx8
Calcium binding site 1 out
of 10 in the Rat Megalin Head
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Rat Megalin Head within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4706
b:236.9
occ:1.00
|
O
|
A:ALA1331
|
2.3
|
229.4
|
1.0
|
|
OD1
|
A:ASP1338
|
2.4
|
229.8
|
1.0
|
|
OD2
|
A:ASP1344
|
2.4
|
232.4
|
1.0
|
|
O
|
A:VAL1336
|
2.4
|
231.1
|
1.0
|
|
OD2
|
A:ASP1338
|
2.6
|
229.7
|
1.0
|
|
CG
|
A:ASP1338
|
2.6
|
229.7
|
1.0
|
|
OD1
|
A:ASP1334
|
2.7
|
232.1
|
1.0
|
|
OE2
|
A:GLU1345
|
2.7
|
229.0
|
1.0
|
|
N
|
A:ASP1338
|
3.3
|
230.8
|
1.0
|
|
C
|
A:ALA1331
|
3.5
|
229.0
|
1.0
|
|
CG
|
A:ASP1334
|
3.6
|
231.4
|
1.0
|
|
C
|
A:VAL1336
|
3.6
|
230.5
|
1.0
|
|
CD
|
A:GLU1345
|
3.6
|
228.7
|
1.0
|
|
CG
|
A:ASP1344
|
3.7
|
232.0
|
1.0
|
|
CB
|
A:ASP1338
|
3.8
|
229.5
|
1.0
|
|
CG
|
A:GLU1345
|
3.9
|
228.8
|
1.0
|
|
CA
|
A:PHE1337
|
4.0
|
229.0
|
1.0
|
|
OD2
|
A:ASP1334
|
4.0
|
230.9
|
1.0
|
|
C
|
A:PHE1337
|
4.1
|
229.0
|
1.0
|
|
CA
|
A:ASP1338
|
4.1
|
230.1
|
1.0
|
|
N
|
A:CYS1333
|
4.2
|
231.0
|
1.0
|
|
N
|
A:ASP1334
|
4.2
|
232.4
|
1.0
|
|
N
|
A:PHE1337
|
4.2
|
228.9
|
1.0
|
|
CA
|
A:LEU1332
|
4.3
|
228.8
|
1.0
|
|
CB
|
A:ALA1331
|
4.3
|
228.0
|
1.0
|
|
N
|
A:LEU1332
|
4.3
|
229.1
|
1.0
|
|
OD1
|
A:ASP1344
|
4.4
|
232.2
|
1.0
|
|
CA
|
A:ALA1331
|
4.5
|
228.5
|
1.0
|
|
C
|
A:LEU1332
|
4.6
|
229.1
|
1.0
|
|
CB
|
A:ASP1344
|
4.6
|
231.7
|
1.0
|
|
CB
|
A:ASP1334
|
4.6
|
231.2
|
1.0
|
|
N
|
A:VAL1336
|
4.6
|
230.4
|
1.0
|
|
CA
|
A:VAL1336
|
4.7
|
230.4
|
1.0
|
|
OE1
|
A:GLU1345
|
4.7
|
228.7
|
1.0
|
|
CA
|
A:ASP1334
|
4.9
|
232.0
|
1.0
|
|
O
|
A:ASP1344
|
4.9
|
231.6
|
1.0
|
|
Calcium binding site 2 out
of 10 in 8jx8
Go back to
Calcium Binding Sites List in 8jx8
Calcium binding site 2 out
of 10 in the Rat Megalin Head
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Rat Megalin Head within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4707
b:117.8
occ:1.00
|
OE2
|
A:GLU1394
|
2.3
|
119.6
|
1.0
|
|
O
|
A:MET1408
|
2.3
|
121.7
|
1.0
|
|
OD1
|
A:ASN1407
|
2.4
|
119.0
|
1.0
|
|
OE1
|
A:GLU1394
|
2.5
|
119.0
|
1.0
|
|
O
|
A:ILE1392
|
2.6
|
129.1
|
1.0
|
|
CD
|
A:GLU1394
|
2.7
|
119.1
|
1.0
|
|
OD1
|
A:ASP1391
|
2.7
|
133.1
|
1.0
|
|
O
|
A:SER1411
|
2.8
|
118.0
|
1.0
|
|
OD2
|
A:ASP1391
|
2.8
|
133.6
|
1.0
|
|
CG
|
A:ASP1391
|
3.1
|
133.4
|
1.0
|
|
N
|
A:SER1411
|
3.5
|
117.4
|
1.0
|
|
CG
|
A:ASN1407
|
3.5
|
119.9
|
1.0
|
|
C
|
A:MET1408
|
3.5
|
121.4
|
1.0
|
|
N
|
A:GLY1410
|
3.8
|
126.4
|
1.0
|
|
C
|
A:SER1411
|
3.8
|
117.0
|
1.0
|
|
C
|
A:ILE1392
|
3.8
|
126.9
|
1.0
|
|
N
|
A:MET1408
|
3.9
|
120.8
|
1.0
|
|
ND2
|
A:ASN1407
|
4.0
|
119.5
|
1.0
|
|
CG
|
A:GLU1394
|
4.1
|
116.5
|
1.0
|
|
CA
|
A:SER1411
|
4.2
|
115.3
|
1.0
|
|
C
|
A:GLY1410
|
4.3
|
126.9
|
1.0
|
|
CA
|
A:GLY1410
|
4.3
|
126.8
|
1.0
|
|
CA
|
A:MET1408
|
4.3
|
119.7
|
1.0
|
|
C
|
A:ARG1409
|
4.4
|
125.7
|
1.0
|
|
N
|
A:GLU1394
|
4.5
|
116.5
|
1.0
|
|
N
|
A:ARG1409
|
4.5
|
127.1
|
1.0
|
|
N
|
A:ILE1392
|
4.5
|
126.7
|
1.0
|
|
CB
|
A:ASP1391
|
4.6
|
133.3
|
1.0
|
|
CA
|
A:ARG1409
|
4.6
|
125.6
|
1.0
|
|
CA
|
A:ASN1393
|
4.7
|
113.6
|
1.0
|
|
N
|
A:ASN1393
|
4.7
|
115.7
|
1.0
|
|
C
|
A:ASN1407
|
4.7
|
120.7
|
1.0
|
|
CA
|
A:ILE1392
|
4.7
|
126.0
|
1.0
|
|
CB
|
A:ASN1407
|
4.7
|
119.7
|
1.0
|
|
CA
|
A:ASN1407
|
4.8
|
119.6
|
1.0
|
|
N
|
A:PHE1412
|
4.9
|
111.4
|
1.0
|
|
O
|
A:GLY1379
|
5.0
|
138.0
|
1.0
|
|
Calcium binding site 3 out
of 10 in 8jx8
Go back to
Calcium Binding Sites List in 8jx8
Calcium binding site 3 out
of 10 in the Rat Megalin Head
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Rat Megalin Head within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4708
b:52.6
occ:1.00
|
O
|
A:PRO2279
|
2.3
|
46.7
|
1.0
|
|
OD1
|
B:ASN2001
|
2.3
|
62.9
|
1.0
|
|
OD1
|
A:ASP2257
|
2.4
|
60.7
|
1.0
|
|
O
|
A:ASP2254
|
2.4
|
56.0
|
1.0
|
|
C
|
A:PRO2279
|
3.3
|
38.3
|
1.0
|
|
CG
|
A:ASP2257
|
3.3
|
55.7
|
1.0
|
|
CG
|
B:ASN2001
|
3.5
|
67.0
|
1.0
|
|
C
|
A:ASP2254
|
3.6
|
49.0
|
1.0
|
|
OD2
|
A:ASP2257
|
3.6
|
57.0
|
1.0
|
|
CA
|
A:PRO2279
|
3.8
|
36.5
|
1.0
|
|
OE1
|
B:GLU1982
|
4.0
|
61.4
|
1.0
|
|
CG2
|
A:THR2280
|
4.3
|
51.3
|
1.0
|
|
ND2
|
B:ASN2001
|
4.4
|
68.9
|
1.0
|
|
N
|
A:THR2280
|
4.4
|
38.2
|
1.0
|
|
CA
|
A:ASP2254
|
4.5
|
38.8
|
1.0
|
|
CB
|
A:PRO2279
|
4.5
|
42.6
|
1.0
|
|
CB
|
B:ASN2001
|
4.5
|
56.6
|
1.0
|
|
N
|
A:SER2255
|
4.6
|
52.2
|
1.0
|
|
CA
|
A:SER2255
|
4.6
|
50.1
|
1.0
|
|
CB
|
A:ASP2257
|
4.7
|
46.0
|
1.0
|
|
CA
|
A:THR2280
|
4.7
|
48.1
|
1.0
|
|
OD2
|
A:ASP2254
|
4.8
|
69.0
|
1.0
|
|
CA
|
B:ASN2001
|
4.8
|
58.2
|
1.0
|
|
CB
|
A:ASP2254
|
4.8
|
47.7
|
1.0
|
|
N
|
A:ASP2257
|
4.9
|
50.8
|
1.0
|
|
C
|
A:SER2255
|
4.9
|
47.4
|
1.0
|
|
O
|
A:TYR2278
|
4.9
|
52.8
|
1.0
|
|
CA
|
A:ASP2257
|
5.0
|
42.6
|
1.0
|
|
Calcium binding site 4 out
of 10 in 8jx8
Go back to
Calcium Binding Sites List in 8jx8
Calcium binding site 4 out
of 10 in the Rat Megalin Head
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Rat Megalin Head within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4709
b:188.2
occ:1.00
|
OD1
|
A:ASP2721
|
2.3
|
181.9
|
1.0
|
|
OD1
|
A:ASP2731
|
2.3
|
174.5
|
1.0
|
|
OE2
|
A:GLU2732
|
2.3
|
175.5
|
1.0
|
|
OD2
|
A:ASP2725
|
2.3
|
180.1
|
1.0
|
|
O
|
A:TRP2718
|
2.4
|
177.6
|
1.0
|
|
O
|
A:ASP2723
|
2.5
|
183.4
|
1.0
|
|
CG
|
A:ASP2721
|
3.2
|
181.6
|
1.0
|
|
N
|
A:ASP2721
|
3.2
|
181.1
|
1.0
|
|
CD
|
A:GLU2732
|
3.3
|
174.9
|
1.0
|
|
CG
|
A:ASP2731
|
3.3
|
174.0
|
1.0
|
|
CG
|
A:ASP2725
|
3.4
|
180.2
|
1.0
|
|
N
|
A:CYS2720
|
3.5
|
177.1
|
1.0
|
|
C
|
A:ASP2723
|
3.6
|
183.3
|
1.0
|
|
C
|
A:TRP2718
|
3.7
|
176.5
|
1.0
|
|
CG
|
A:GLU2732
|
3.8
|
174.4
|
1.0
|
|
OD2
|
A:ASP2721
|
3.9
|
181.4
|
1.0
|
|
CA
|
A:CYS2720
|
4.0
|
176.9
|
1.0
|
|
N
|
A:ASP2723
|
4.0
|
184.1
|
1.0
|
|
OD2
|
A:ASP2731
|
4.0
|
173.8
|
1.0
|
|
CA
|
A:ASP2721
|
4.1
|
181.0
|
1.0
|
|
C
|
A:CYS2720
|
4.1
|
177.0
|
1.0
|
|
CB
|
A:ASP2721
|
4.1
|
181.0
|
1.0
|
|
OD1
|
A:ASP2725
|
4.2
|
180.4
|
1.0
|
|
C
|
A:LYS2719
|
4.2
|
172.6
|
1.0
|
|
CB
|
A:ASP2731
|
4.3
|
173.1
|
1.0
|
|
N
|
A:ASN2722
|
4.4
|
181.1
|
1.0
|
|
CA
|
A:ASP2723
|
4.4
|
183.5
|
1.0
|
|
C
|
A:ASP2721
|
4.4
|
181.5
|
1.0
|
|
CA
|
A:LYS2719
|
4.4
|
173.0
|
1.0
|
|
OE1
|
A:GLU2732
|
4.4
|
174.4
|
1.0
|
|
CB
|
A:ASP2725
|
4.4
|
180.2
|
1.0
|
|
N
|
A:LYS2719
|
4.5
|
172.8
|
1.0
|
|
N
|
A:ASP2725
|
4.6
|
180.6
|
1.0
|
|
CA
|
A:TRP2718
|
4.6
|
176.5
|
1.0
|
|
N
|
A:ASN2724
|
4.7
|
179.6
|
1.0
|
|
CB
|
A:TRP2718
|
4.7
|
176.6
|
1.0
|
|
C
|
A:ASN2724
|
4.8
|
180.0
|
1.0
|
|
CA
|
A:ASN2724
|
4.8
|
179.8
|
1.0
|
|
CB
|
A:ASP2723
|
4.9
|
183.6
|
1.0
|
|
Calcium binding site 5 out
of 10 in 8jx8
Go back to
Calcium Binding Sites List in 8jx8
Calcium binding site 5 out
of 10 in the Rat Megalin Head
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Rat Megalin Head within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4710
b:48.1
occ:1.00
|
OD1
|
A:ASP1621
|
2.4
|
54.7
|
1.0
|
|
O
|
A:HIS1644
|
2.6
|
53.8
|
1.0
|
|
OD2
|
A:ASP1621
|
2.7
|
57.1
|
1.0
|
|
O
|
A:ALA1618
|
2.7
|
52.5
|
1.0
|
|
CG
|
A:ASP1621
|
2.9
|
52.6
|
1.0
|
|
C
|
A:HIS1644
|
3.8
|
48.9
|
1.0
|
|
C
|
A:ALA1618
|
3.9
|
45.1
|
1.0
|
|
CB
|
A:ASP1621
|
4.4
|
45.5
|
1.0
|
|
O
|
A:TYR1619
|
4.4
|
55.3
|
1.0
|
|
OH
|
B:TYR2168
|
4.4
|
65.6
|
1.0
|
|
CZ
|
B:TYR2168
|
4.5
|
62.9
|
1.0
|
|
CA
|
A:TYR1619
|
4.5
|
36.3
|
1.0
|
|
CA
|
A:HIS1644
|
4.5
|
47.4
|
1.0
|
|
N
|
A:TYR1619
|
4.6
|
39.3
|
1.0
|
|
C
|
A:TYR1619
|
4.7
|
46.0
|
1.0
|
|
N
|
A:HIS1645
|
4.7
|
41.9
|
1.0
|
|
O
|
A:LEU1643
|
4.8
|
53.5
|
1.0
|
|
CE1
|
B:TYR2168
|
4.8
|
58.4
|
1.0
|
|
CA
|
A:ALA1618
|
4.8
|
39.8
|
1.0
|
|
ND1
|
A:HIS1644
|
4.8
|
52.6
|
1.0
|
|
CE2
|
B:TYR2168
|
4.9
|
61.9
|
1.0
|
|
CA
|
A:HIS1645
|
4.9
|
35.0
|
1.0
|
|
Calcium binding site 6 out
of 10 in 8jx8
Go back to
Calcium Binding Sites List in 8jx8
Calcium binding site 6 out
of 10 in the Rat Megalin Head
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Rat Megalin Head within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4706
b:248.5
occ:1.00
|
OE2
|
B:GLU1345
|
2.3
|
240.5
|
1.0
|
|
OD2
|
B:ASP1338
|
2.3
|
240.0
|
1.0
|
|
OD2
|
B:ASP1344
|
2.3
|
241.8
|
1.0
|
|
O
|
B:VAL1336
|
2.4
|
240.3
|
1.0
|
|
OD1
|
B:ASP1334
|
2.5
|
235.3
|
1.0
|
|
OE1
|
B:GLU1345
|
2.7
|
240.2
|
1.0
|
|
CD
|
B:GLU1345
|
2.8
|
239.8
|
1.0
|
|
CG
|
B:ASP1344
|
2.9
|
241.8
|
1.0
|
|
CG
|
B:ASP1338
|
3.2
|
239.9
|
1.0
|
|
OD1
|
B:ASP1344
|
3.5
|
241.5
|
1.0
|
|
N
|
B:ASP1338
|
3.5
|
240.7
|
1.0
|
|
C
|
B:VAL1336
|
3.6
|
239.6
|
1.0
|
|
CB
|
B:ASP1344
|
3.7
|
241.5
|
1.0
|
|
CG
|
B:ASP1334
|
3.7
|
234.8
|
1.0
|
|
CB
|
B:ASP1338
|
3.8
|
240.2
|
1.0
|
|
N
|
B:GLY1335
|
3.9
|
237.4
|
1.0
|
|
C
|
B:GLY1335
|
4.0
|
236.9
|
1.0
|
|
O
|
B:GLY1335
|
4.0
|
236.8
|
1.0
|
|
OD1
|
B:ASP1338
|
4.0
|
239.5
|
1.0
|
|
N
|
B:ASP1334
|
4.1
|
235.5
|
1.0
|
|
CA
|
B:PHE1337
|
4.3
|
240.0
|
1.0
|
|
CA
|
B:ASP1338
|
4.3
|
240.3
|
1.0
|
|
CG
|
B:GLU1345
|
4.3
|
239.3
|
1.0
|
|
N
|
B:VAL1336
|
4.3
|
238.8
|
1.0
|
|
OD2
|
B:ASP1334
|
4.3
|
234.6
|
1.0
|
|
N
|
B:PHE1337
|
4.4
|
240.0
|
1.0
|
|
C
|
B:PHE1337
|
4.4
|
240.0
|
1.0
|
|
CA
|
B:GLY1335
|
4.4
|
236.8
|
1.0
|
|
CA
|
B:VAL1336
|
4.6
|
239.1
|
1.0
|
|
C
|
B:ASP1344
|
4.6
|
241.5
|
1.0
|
|
O
|
B:ASP1344
|
4.6
|
241.2
|
1.0
|
|
O
|
B:ALA1331
|
4.6
|
236.0
|
1.0
|
|
C
|
B:ASP1334
|
4.7
|
235.0
|
1.0
|
|
C
|
B:CYS1333
|
4.7
|
237.6
|
1.0
|
|
CA
|
B:CYS1333
|
4.7
|
237.9
|
1.0
|
|
CA
|
B:ASP1334
|
4.7
|
234.8
|
1.0
|
|
CA
|
B:ASP1344
|
4.8
|
241.7
|
1.0
|
|
CB
|
B:ASP1334
|
4.8
|
234.7
|
1.0
|
|
N
|
B:CYS1333
|
4.9
|
237.5
|
1.0
|
|
Calcium binding site 7 out
of 10 in 8jx8
Go back to
Calcium Binding Sites List in 8jx8
Calcium binding site 7 out
of 10 in the Rat Megalin Head
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Rat Megalin Head within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4707
b:130.3
occ:1.00
|
OE2
|
B:GLU1394
|
2.3
|
126.0
|
1.0
|
|
O
|
B:SER1411
|
2.4
|
124.0
|
1.0
|
|
OE1
|
B:GLU1394
|
2.4
|
126.1
|
1.0
|
|
OD1
|
B:ASP1391
|
2.4
|
138.7
|
1.0
|
|
O
|
B:MET1408
|
2.5
|
131.0
|
1.0
|
|
OD1
|
B:ASN1407
|
2.6
|
124.5
|
1.0
|
|
CD
|
B:GLU1394
|
2.7
|
125.7
|
1.0
|
|
O
|
B:ILE1392
|
2.8
|
133.7
|
1.0
|
|
OD2
|
B:ASP1391
|
3.1
|
138.1
|
1.0
|
|
CG
|
B:ASP1391
|
3.1
|
139.5
|
1.0
|
|
N
|
B:SER1411
|
3.2
|
126.9
|
1.0
|
|
C
|
B:SER1411
|
3.4
|
123.8
|
1.0
|
|
C
|
B:MET1408
|
3.6
|
129.3
|
1.0
|
|
N
|
B:MET1408
|
3.7
|
128.3
|
1.0
|
|
CG
|
B:ASN1407
|
3.8
|
124.7
|
1.0
|
|
CA
|
B:SER1411
|
3.9
|
122.9
|
1.0
|
|
N
|
B:GLY1410
|
3.9
|
137.8
|
1.0
|
|
C
|
B:GLY1410
|
4.0
|
138.3
|
1.0
|
|
C
|
B:ILE1392
|
4.0
|
132.9
|
1.0
|
|
CA
|
B:GLY1410
|
4.2
|
137.6
|
1.0
|
|
CG
|
B:GLU1394
|
4.2
|
123.7
|
1.0
|
|
CA
|
B:MET1408
|
4.3
|
127.8
|
1.0
|
|
N
|
B:PHE1412
|
4.5
|
118.6
|
1.0
|
|
N
|
B:GLU1394
|
4.5
|
123.9
|
1.0
|
|
ND2
|
B:ASN1407
|
4.5
|
123.7
|
1.0
|
|
CB
|
B:ASP1391
|
4.6
|
139.3
|
1.0
|
|
C
|
B:ASN1407
|
4.6
|
125.9
|
1.0
|
|
C
|
B:ARG1409
|
4.7
|
138.1
|
1.0
|
|
CA
|
B:ASN1407
|
4.7
|
123.6
|
1.0
|
|
N
|
B:ILE1392
|
4.7
|
133.3
|
1.0
|
|
N
|
B:ARG1409
|
4.7
|
136.8
|
1.0
|
|
CA
|
B:ASN1393
|
4.8
|
120.8
|
1.0
|
|
CB
|
B:ASN1407
|
4.8
|
123.4
|
1.0
|
|
N
|
B:ASN1393
|
4.9
|
123.1
|
1.0
|
|
CA
|
B:PHE1412
|
4.9
|
116.8
|
1.0
|
|
CB
|
B:MET1408
|
5.0
|
127.9
|
1.0
|
|
CG1
|
B:ILE1392
|
5.0
|
130.0
|
1.0
|
|
CA
|
B:ARG1409
|
5.0
|
136.7
|
1.0
|
|
O
|
B:GLY1410
|
5.0
|
137.3
|
1.0
|
|
Calcium binding site 8 out
of 10 in 8jx8
Go back to
Calcium Binding Sites List in 8jx8
Calcium binding site 8 out
of 10 in the Rat Megalin Head
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Rat Megalin Head within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4708
b:46.0
occ:1.00
|
O
|
B:ASP2254
|
2.3
|
57.1
|
1.0
|
|
OD1
|
A:ASN2001
|
2.3
|
60.2
|
1.0
|
|
OD1
|
B:ASP2257
|
2.4
|
62.5
|
1.0
|
|
O
|
B:PRO2279
|
2.6
|
46.1
|
1.0
|
|
CG
|
B:ASP2257
|
3.5
|
58.1
|
1.0
|
|
CG
|
A:ASN2001
|
3.5
|
56.6
|
1.0
|
|
C
|
B:ASP2254
|
3.5
|
61.0
|
1.0
|
|
C
|
B:PRO2279
|
3.6
|
44.0
|
1.0
|
|
OD2
|
B:ASP2257
|
3.9
|
60.9
|
1.0
|
|
CA
|
B:PRO2279
|
4.1
|
37.0
|
1.0
|
|
OE1
|
A:GLU1982
|
4.1
|
58.6
|
1.0
|
|
CB
|
A:ASN2001
|
4.3
|
49.3
|
1.0
|
|
CG2
|
B:THR2280
|
4.4
|
51.3
|
1.0
|
|
CA
|
B:ASP2254
|
4.4
|
51.1
|
1.0
|
|
N
|
B:SER2255
|
4.5
|
59.8
|
1.0
|
|
ND2
|
A:ASN2001
|
4.5
|
57.5
|
1.0
|
|
CA
|
B:SER2255
|
4.5
|
53.1
|
1.0
|
|
CA
|
A:ASN2001
|
4.5
|
49.1
|
1.0
|
|
N
|
B:ASP2257
|
4.6
|
51.5
|
1.0
|
|
N
|
B:THR2280
|
4.7
|
45.5
|
1.0
|
|
C
|
B:SER2255
|
4.7
|
55.8
|
1.0
|
|
CB
|
B:ASP2257
|
4.7
|
48.3
|
1.0
|
|
CB
|
B:ASP2254
|
4.8
|
57.6
|
1.0
|
|
CB
|
B:PRO2279
|
4.8
|
42.2
|
1.0
|
|
CA
|
B:ASP2257
|
4.9
|
46.0
|
1.0
|
|
O
|
B:SER2255
|
5.0
|
64.4
|
1.0
|
|
CA
|
B:THR2280
|
5.0
|
53.9
|
1.0
|
|
O
|
B:TYR2278
|
5.0
|
57.3
|
1.0
|
|
Calcium binding site 9 out
of 10 in 8jx8
Go back to
Calcium Binding Sites List in 8jx8
Calcium binding site 9 out
of 10 in the Rat Megalin Head
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Rat Megalin Head within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4709
b:187.0
occ:1.00
|
OD1
|
B:ASP2721
|
2.2
|
185.5
|
1.0
|
|
OD2
|
B:ASP2731
|
2.3
|
179.8
|
1.0
|
|
O
|
B:ASP2723
|
2.3
|
186.9
|
1.0
|
|
OD2
|
B:ASP2725
|
2.3
|
181.0
|
1.0
|
|
O
|
B:ASP2721
|
2.6
|
185.7
|
1.0
|
|
CG
|
B:ASP2725
|
2.7
|
181.2
|
1.0
|
|
OE2
|
B:GLU2732
|
2.8
|
178.5
|
1.0
|
|
O
|
B:TRP2718
|
2.9
|
177.4
|
1.0
|
|
OD1
|
B:ASP2725
|
3.0
|
182.0
|
1.0
|
|
CG
|
B:ASP2721
|
3.2
|
185.0
|
1.0
|
|
CG
|
B:ASP2731
|
3.4
|
178.5
|
1.0
|
|
C
|
B:ASP2723
|
3.4
|
187.6
|
1.0
|
|
CB
|
B:ASP2725
|
3.6
|
181.2
|
1.0
|
|
N
|
B:ASP2725
|
3.6
|
180.9
|
1.0
|
|
C
|
B:ASP2721
|
3.7
|
185.0
|
1.0
|
|
CD
|
B:GLU2732
|
3.7
|
178.2
|
1.0
|
|
OD2
|
B:ASP2721
|
3.8
|
184.6
|
1.0
|
|
N
|
B:ASP2721
|
3.8
|
185.0
|
1.0
|
|
CB
|
B:ASP2731
|
4.0
|
177.8
|
1.0
|
|
C
|
B:TRP2718
|
4.1
|
177.0
|
1.0
|
|
CA
|
B:ASP2721
|
4.1
|
184.6
|
1.0
|
|
N
|
B:ASP2723
|
4.2
|
187.8
|
1.0
|
|
CG
|
B:GLU2732
|
4.2
|
178.1
|
1.0
|
|
CA
|
B:ASP2723
|
4.2
|
188.0
|
1.0
|
|
CB
|
B:ASP2721
|
4.2
|
184.6
|
1.0
|
|
CA
|
B:ASP2725
|
4.3
|
181.3
|
1.0
|
|
N
|
B:ASN2724
|
4.4
|
183.6
|
1.0
|
|
OD1
|
B:ASP2731
|
4.5
|
178.1
|
1.0
|
|
CB
|
B:ASP2723
|
4.5
|
187.9
|
1.0
|
|
OE1
|
B:GLU2732
|
4.6
|
177.6
|
1.0
|
|
C
|
B:ASN2724
|
4.6
|
182.4
|
1.0
|
|
CA
|
B:ASN2724
|
4.6
|
182.9
|
1.0
|
|
N
|
B:CYS2720
|
4.6
|
179.5
|
1.0
|
|
C
|
B:ASN2722
|
4.7
|
187.1
|
1.0
|
|
CA
|
B:TRP2718
|
4.8
|
177.0
|
1.0
|
|
N
|
B:ASN2722
|
4.8
|
186.4
|
1.0
|
|
C
|
B:CYS2720
|
5.0
|
180.1
|
1.0
|
|
Calcium binding site 10 out
of 10 in 8jx8
Go back to
Calcium Binding Sites List in 8jx8
Calcium binding site 10 out
of 10 in the Rat Megalin Head
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Rat Megalin Head within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4710
b:48.6
occ:1.00
|
O
|
B:HIS1644
|
2.5
|
63.3
|
1.0
|
|
OD1
|
B:ASP1621
|
2.5
|
60.8
|
1.0
|
|
O
|
B:ALA1618
|
2.6
|
56.4
|
1.0
|
|
OD2
|
B:ASP1621
|
2.7
|
68.7
|
1.0
|
|
CG
|
B:ASP1621
|
3.0
|
59.5
|
1.0
|
|
C
|
B:HIS1644
|
3.7
|
63.3
|
1.0
|
|
C
|
B:ALA1618
|
3.8
|
50.4
|
1.0
|
|
O
|
B:TYR1619
|
4.2
|
50.5
|
1.0
|
|
CA
|
B:TYR1619
|
4.4
|
38.4
|
1.0
|
|
CZ
|
A:TYR2168
|
4.4
|
55.4
|
1.0
|
|
OH
|
A:TYR2168
|
4.4
|
57.0
|
1.0
|
|
CA
|
B:HIS1644
|
4.5
|
59.9
|
1.0
|
|
CB
|
B:ASP1621
|
4.5
|
50.9
|
1.0
|
|
C
|
B:TYR1619
|
4.5
|
47.6
|
1.0
|
|
N
|
B:TYR1619
|
4.6
|
45.5
|
1.0
|
|
CD2
|
B:HIS1644
|
4.6
|
63.9
|
1.0
|
|
CE2
|
A:TYR2168
|
4.6
|
55.7
|
1.0
|
|
N
|
B:HIS1645
|
4.6
|
52.8
|
1.0
|
|
CA
|
B:HIS1645
|
4.7
|
50.4
|
1.0
|
|
CE1
|
A:TYR2168
|
4.8
|
50.2
|
1.0
|
|
CA
|
B:ALA1618
|
4.9
|
44.7
|
1.0
|
|
Reference:
S.Goto,
A.Tsutsumi,
Y.Lee,
M.Hosojima,
H.Kabasawa,
K.Komochi,
S.Nagatoishi,
K.Takemoto,
K.Tsumoto,
T.Nishizawa,
M.Kikkawa,
A.Saito.
Cryo-Em Structures Elucidate the Multiligand Receptor Nature of Megalin. Proc.Natl.Acad.Sci.Usa V. 121 59121 2024.
ISSN: ESSN 1091-6490
PubMed: 38771880
DOI: 10.1073/PNAS.2318859121
Page generated: Fri Jul 19 10:12:06 2024
|
