Calcium in PDB 8jxc: Rat Megalin Wingb
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
17;
Binding sites:
The binding sites of Calcium atom in the Rat Megalin Wingb
(pdb code 8jxc). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 17 binding sites of Calcium where determined in the
Rat Megalin Wingb, PDB code: 8jxc:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 17 in 8jxc
Go back to
Calcium Binding Sites List in 8jxc
Calcium binding site 1 out
of 17 in the Rat Megalin Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Rat Megalin Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4711
b:215.3
occ:1.00
|
OD1
|
A:ASP203
|
2.3
|
208.6
|
1.0
|
O
|
A:ASP205
|
2.3
|
213.3
|
1.0
|
OD2
|
A:ASP213
|
2.3
|
223.7
|
1.0
|
OE2
|
A:GLU214
|
2.5
|
219.0
|
1.0
|
O
|
A:TYR200
|
2.8
|
217.2
|
1.0
|
OD2
|
A:ASP207
|
2.8
|
225.1
|
1.0
|
N
|
A:ASP205
|
3.1
|
212.7
|
1.0
|
C
|
A:ASP205
|
3.2
|
213.6
|
1.0
|
CB
|
A:ASP205
|
3.3
|
213.2
|
1.0
|
CA
|
A:ASP205
|
3.3
|
213.5
|
1.0
|
N
|
A:ASP203
|
3.3
|
208.5
|
1.0
|
CG
|
A:ASP203
|
3.5
|
207.8
|
1.0
|
CG
|
A:ASP213
|
3.5
|
223.4
|
1.0
|
CD
|
A:GLU214
|
3.6
|
218.8
|
1.0
|
N
|
A:CYS202
|
3.7
|
212.6
|
1.0
|
CG
|
A:ASP207
|
3.8
|
224.7
|
1.0
|
C
|
A:TYR200
|
3.9
|
218.1
|
1.0
|
N
|
A:HIS204
|
4.1
|
193.4
|
1.0
|
CA
|
A:ASP203
|
4.1
|
207.3
|
1.0
|
C
|
A:ASP203
|
4.1
|
207.4
|
1.0
|
OD1
|
A:ASP213
|
4.2
|
222.6
|
1.0
|
CG
|
A:GLU214
|
4.3
|
217.6
|
1.0
|
C
|
A:CYS202
|
4.3
|
213.9
|
1.0
|
CA
|
A:CYS202
|
4.3
|
213.0
|
1.0
|
C
|
A:HIS204
|
4.3
|
191.1
|
1.0
|
OD1
|
A:ASP207
|
4.3
|
223.8
|
1.0
|
CG
|
A:ASP205
|
4.3
|
212.2
|
1.0
|
C
|
A:VAL201
|
4.3
|
216.8
|
1.0
|
CB
|
A:ASP203
|
4.3
|
206.7
|
1.0
|
OD2
|
A:ASP203
|
4.4
|
207.1
|
1.0
|
CA
|
A:VAL201
|
4.4
|
216.9
|
1.0
|
N
|
A:ASN206
|
4.4
|
221.2
|
1.0
|
N
|
A:VAL201
|
4.6
|
217.6
|
1.0
|
OE1
|
A:GLU214
|
4.7
|
218.9
|
1.0
|
CB
|
A:ASP213
|
4.7
|
223.0
|
1.0
|
O
|
A:ASP203
|
4.7
|
207.5
|
1.0
|
OD2
|
A:ASP205
|
4.7
|
211.1
|
1.0
|
CB
|
A:ASP207
|
4.8
|
224.8
|
1.0
|
CA
|
A:HIS204
|
4.8
|
192.0
|
1.0
|
CA
|
A:TYR200
|
4.9
|
218.8
|
1.0
|
C
|
A:ASN206
|
5.0
|
221.7
|
1.0
|
|
Calcium binding site 2 out
of 17 in 8jxc
Go back to
Calcium Binding Sites List in 8jxc
Calcium binding site 2 out
of 17 in the Rat Megalin Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Rat Megalin Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4712
b:130.1
occ:1.00
|
O
|
A:TRP239
|
2.3
|
114.3
|
1.0
|
OD1
|
A:ASP242
|
2.3
|
116.8
|
1.0
|
OD2
|
A:ASP252
|
2.3
|
120.6
|
1.0
|
O
|
A:ASP244
|
2.3
|
118.2
|
1.0
|
OD2
|
A:ASP246
|
2.3
|
133.2
|
1.0
|
OE2
|
A:GLU253
|
2.8
|
125.1
|
1.0
|
CG
|
A:ASP242
|
3.2
|
116.1
|
1.0
|
CG
|
A:ASP246
|
3.4
|
130.8
|
1.0
|
C
|
A:ASP244
|
3.4
|
114.7
|
1.0
|
C
|
A:TRP239
|
3.4
|
113.3
|
1.0
|
OD2
|
A:ASP242
|
3.5
|
117.5
|
1.0
|
CG
|
A:ASP252
|
3.5
|
122.5
|
1.0
|
N
|
A:ASP244
|
3.8
|
122.4
|
1.0
|
CD
|
A:GLU253
|
3.8
|
123.2
|
1.0
|
CA
|
A:ASP244
|
3.9
|
117.1
|
1.0
|
CB
|
A:ASP244
|
4.0
|
116.1
|
1.0
|
OD1
|
A:ASP246
|
4.1
|
131.1
|
1.0
|
N
|
A:ASP246
|
4.2
|
128.6
|
1.0
|
CB
|
A:TRP239
|
4.2
|
116.2
|
1.0
|
CG
|
A:GLU253
|
4.2
|
120.8
|
1.0
|
CB
|
A:ASP246
|
4.2
|
127.3
|
1.0
|
OD1
|
A:ASP252
|
4.2
|
125.8
|
1.0
|
CA
|
A:TRP239
|
4.2
|
111.8
|
1.0
|
N
|
A:ASP242
|
4.2
|
121.5
|
1.0
|
N
|
A:CYS241
|
4.4
|
121.5
|
1.0
|
N
|
A:VAL240
|
4.4
|
108.8
|
1.0
|
CB
|
A:ASP242
|
4.5
|
117.2
|
1.0
|
CA
|
A:VAL240
|
4.6
|
106.9
|
1.0
|
N
|
A:ASP245
|
4.6
|
121.0
|
1.0
|
CB
|
A:ASP252
|
4.6
|
122.5
|
1.0
|
N
|
A:GLY243
|
4.6
|
123.3
|
1.0
|
O
|
A:ASP252
|
4.7
|
122.9
|
1.0
|
C
|
A:VAL240
|
4.7
|
110.5
|
1.0
|
CA
|
A:ASP242
|
4.8
|
119.6
|
1.0
|
CA
|
A:ASP246
|
4.8
|
126.3
|
1.0
|
CG
|
A:TRP239
|
4.9
|
122.3
|
1.0
|
OE1
|
A:GLU253
|
4.9
|
122.4
|
1.0
|
C
|
A:GLY243
|
4.9
|
126.3
|
1.0
|
CA
|
A:ASP245
|
4.9
|
128.1
|
1.0
|
CD1
|
A:TRP239
|
5.0
|
120.0
|
1.0
|
|
Calcium binding site 3 out
of 17 in 8jxc
Go back to
Calcium Binding Sites List in 8jxc
Calcium binding site 3 out
of 17 in the Rat Megalin Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Rat Megalin Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4713
b:270.6
occ:1.00
|
O
|
A:VAL288
|
2.2
|
265.8
|
1.0
|
O
|
A:LYS283
|
2.2
|
260.9
|
1.0
|
OD2
|
A:ASP296
|
2.3
|
261.7
|
1.0
|
OD1
|
A:ASP286
|
2.3
|
266.4
|
1.0
|
OE2
|
A:GLU297
|
2.3
|
263.1
|
1.0
|
OD2
|
A:ASP290
|
2.6
|
262.7
|
1.0
|
C
|
A:VAL288
|
3.3
|
265.2
|
1.0
|
CG
|
A:ASP286
|
3.4
|
265.1
|
1.0
|
CG
|
A:ASP296
|
3.4
|
261.8
|
1.0
|
CG
|
A:ASP290
|
3.4
|
262.4
|
1.0
|
C
|
A:LYS283
|
3.5
|
260.3
|
1.0
|
CD
|
A:GLU297
|
3.5
|
262.7
|
1.0
|
N
|
A:VAL288
|
3.5
|
265.2
|
1.0
|
N
|
A:ASP286
|
3.6
|
265.8
|
1.0
|
N
|
A:CYS285
|
3.8
|
260.8
|
1.0
|
CA
|
A:VAL288
|
3.9
|
265.1
|
1.0
|
OD1
|
A:ASP296
|
3.9
|
261.4
|
1.0
|
CG
|
A:GLU297
|
4.0
|
262.6
|
1.0
|
N
|
A:GLY287
|
4.0
|
264.6
|
1.0
|
OD1
|
A:ASP290
|
4.2
|
261.4
|
1.0
|
OD2
|
A:ASP286
|
4.2
|
264.4
|
1.0
|
CB
|
A:ASP290
|
4.2
|
261.9
|
1.0
|
CA
|
A:VAL284
|
4.2
|
258.0
|
1.0
|
C
|
A:VAL284
|
4.2
|
258.1
|
1.0
|
CB
|
A:ASP286
|
4.3
|
264.7
|
1.0
|
N
|
A:VAL284
|
4.3
|
258.5
|
1.0
|
CA
|
A:ASP286
|
4.3
|
265.4
|
1.0
|
N
|
A:ASP290
|
4.4
|
261.5
|
1.0
|
CB
|
A:VAL288
|
4.4
|
264.0
|
1.0
|
CA
|
A:LYS283
|
4.4
|
259.7
|
1.0
|
N
|
A:PRO289
|
4.4
|
261.6
|
1.0
|
O
|
A:ASP296
|
4.4
|
261.6
|
1.0
|
C
|
A:CYS285
|
4.5
|
260.4
|
1.0
|
CA
|
A:CYS285
|
4.5
|
260.6
|
1.0
|
C
|
A:ASP286
|
4.5
|
265.1
|
1.0
|
C
|
A:GLY287
|
4.5
|
263.9
|
1.0
|
OE1
|
A:GLU297
|
4.5
|
262.7
|
1.0
|
CB
|
A:ASP296
|
4.6
|
261.4
|
1.0
|
CA
|
A:PRO289
|
4.7
|
261.2
|
1.0
|
CB
|
A:LYS283
|
4.8
|
258.9
|
1.0
|
CA
|
A:GLY287
|
4.8
|
263.9
|
1.0
|
C
|
A:PRO289
|
4.9
|
260.8
|
1.0
|
CA
|
A:ASP290
|
5.0
|
261.6
|
1.0
|
|
Calcium binding site 4 out
of 17 in 8jxc
Go back to
Calcium Binding Sites List in 8jxc
Calcium binding site 4 out
of 17 in the Rat Megalin Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Rat Megalin Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4714
b:80.0
occ:1.00
|
OD1
|
A:ASP578
|
2.3
|
76.3
|
1.0
|
OD2
|
A:ASP578
|
2.4
|
91.5
|
1.0
|
OG1
|
A:THR1131
|
2.4
|
97.5
|
1.0
|
O
|
A:PRO601
|
2.5
|
89.3
|
1.0
|
CG
|
A:ASP578
|
2.6
|
84.3
|
1.0
|
O
|
A:SER575
|
2.9
|
83.0
|
1.0
|
CB
|
A:THR1131
|
3.2
|
95.0
|
1.0
|
O
|
A:THR1131
|
3.5
|
97.6
|
1.0
|
C
|
A:PRO601
|
3.7
|
77.7
|
1.0
|
C
|
A:SER575
|
4.0
|
81.3
|
1.0
|
C
|
A:THR1131
|
4.1
|
95.6
|
1.0
|
CB
|
A:ASP578
|
4.1
|
79.8
|
1.0
|
O
|
A:ARG576
|
4.2
|
86.8
|
1.0
|
CG2
|
A:THR1131
|
4.2
|
98.0
|
1.0
|
CA
|
A:THR1131
|
4.3
|
90.5
|
1.0
|
OD1
|
A:ASP1132
|
4.4
|
112.0
|
1.0
|
CA
|
A:HIS602
|
4.5
|
69.2
|
1.0
|
CD2
|
A:HIS602
|
4.5
|
60.6
|
1.0
|
N
|
A:HIS602
|
4.6
|
53.8
|
1.0
|
CA
|
A:PRO601
|
4.6
|
75.8
|
1.0
|
CB
|
A:HIS602
|
4.6
|
74.1
|
1.0
|
O
|
A:ASP1130
|
4.6
|
109.5
|
1.0
|
C
|
A:ARG576
|
4.7
|
81.0
|
1.0
|
CG
|
A:HIS602
|
4.8
|
65.7
|
1.0
|
CA
|
A:SER575
|
4.8
|
72.3
|
1.0
|
CA
|
A:ARG576
|
4.8
|
80.8
|
1.0
|
N
|
A:ARG576
|
4.9
|
89.9
|
1.0
|
CD
|
A:ARG1161
|
4.9
|
102.7
|
1.0
|
CA
|
A:ASP578
|
4.9
|
79.0
|
1.0
|
NE
|
A:ARG1161
|
5.0
|
98.0
|
1.0
|
|
Calcium binding site 5 out
of 17 in 8jxc
Go back to
Calcium Binding Sites List in 8jxc
Calcium binding site 5 out
of 17 in the Rat Megalin Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Rat Megalin Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4715
b:72.2
occ:1.00
|
O
|
A:THR913
|
2.3
|
85.8
|
1.0
|
OD1
|
A:ASP891
|
2.5
|
84.2
|
1.0
|
O
|
A:ALA888
|
2.6
|
75.8
|
1.0
|
CG
|
A:ASP891
|
3.4
|
81.0
|
1.0
|
C
|
A:THR913
|
3.6
|
92.0
|
1.0
|
OD2
|
A:ASP891
|
3.6
|
79.2
|
1.0
|
C
|
A:ALA888
|
3.8
|
64.0
|
1.0
|
CG2
|
A:THR913
|
4.2
|
84.3
|
1.0
|
CA
|
A:THR913
|
4.5
|
83.4
|
1.0
|
N
|
A:HIS914
|
4.5
|
77.3
|
1.0
|
CA
|
A:HIS914
|
4.5
|
65.0
|
1.0
|
CA
|
A:PHE889
|
4.6
|
63.0
|
1.0
|
CB
|
A:HIS914
|
4.7
|
69.6
|
1.0
|
O
|
A:PHE889
|
4.7
|
75.6
|
1.0
|
N
|
A:PHE889
|
4.7
|
65.6
|
1.0
|
CA
|
A:ALA888
|
4.7
|
54.7
|
1.0
|
C
|
A:PHE889
|
4.8
|
70.2
|
1.0
|
CB
|
A:ASP891
|
4.8
|
76.6
|
1.0
|
ND1
|
A:HIS914
|
4.9
|
65.1
|
1.0
|
|
Calcium binding site 6 out
of 17 in 8jxc
Go back to
Calcium Binding Sites List in 8jxc
Calcium binding site 6 out
of 17 in the Rat Megalin Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Rat Megalin Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4716
b:104.5
occ:1.00
|
O
|
A:PHE1042
|
2.3
|
98.9
|
1.0
|
OD2
|
A:ASP1055
|
2.3
|
102.2
|
1.0
|
OD1
|
A:ASP1045
|
2.3
|
109.0
|
1.0
|
OD2
|
A:ASP1049
|
2.3
|
101.9
|
1.0
|
OE2
|
A:GLU1056
|
2.4
|
106.5
|
1.0
|
OD2
|
A:ASP1045
|
2.5
|
110.4
|
1.0
|
O
|
A:VAL1047
|
2.5
|
105.7
|
1.0
|
CG
|
A:ASP1045
|
2.6
|
107.3
|
1.0
|
CG
|
A:ASP1049
|
3.4
|
100.3
|
1.0
|
C
|
A:PHE1042
|
3.5
|
96.0
|
1.0
|
CG
|
A:ASP1055
|
3.5
|
102.2
|
1.0
|
CD
|
A:GLU1056
|
3.6
|
105.0
|
1.0
|
C
|
A:VAL1047
|
3.7
|
100.8
|
1.0
|
CB
|
A:ASP1045
|
4.0
|
101.1
|
1.0
|
CB
|
A:ASP1049
|
4.0
|
98.9
|
1.0
|
CB
|
A:PHE1042
|
4.0
|
97.9
|
1.0
|
N
|
A:ASP1045
|
4.0
|
96.0
|
1.0
|
N
|
A:ASP1049
|
4.1
|
99.5
|
1.0
|
CA
|
A:PHE1042
|
4.1
|
92.6
|
1.0
|
CB
|
A:ASP1055
|
4.2
|
104.3
|
1.0
|
N
|
A:VAL1047
|
4.2
|
102.8
|
1.0
|
CG
|
A:GLU1056
|
4.2
|
102.8
|
1.0
|
CA
|
A:VAL1047
|
4.4
|
100.0
|
1.0
|
OD1
|
A:ASP1055
|
4.4
|
103.8
|
1.0
|
CA
|
A:ASP1045
|
4.5
|
100.0
|
1.0
|
OD1
|
A:ASP1049
|
4.5
|
105.2
|
1.0
|
OE1
|
A:GLU1056
|
4.5
|
103.4
|
1.0
|
N
|
A:ARG1043
|
4.5
|
98.5
|
1.0
|
N
|
A:CYS1044
|
4.5
|
111.5
|
1.0
|
CB
|
A:VAL1047
|
4.7
|
93.9
|
1.0
|
CA
|
A:ASP1049
|
4.7
|
94.8
|
1.0
|
N
|
A:ASP1048
|
4.7
|
97.7
|
1.0
|
CA
|
A:ARG1043
|
4.7
|
97.8
|
1.0
|
CG
|
A:PHE1042
|
4.8
|
99.8
|
1.0
|
C
|
A:ARG1043
|
4.8
|
105.0
|
1.0
|
N
|
A:GLY1046
|
4.9
|
107.7
|
1.0
|
C
|
A:ASP1045
|
4.9
|
105.7
|
1.0
|
C
|
A:ASP1048
|
4.9
|
103.6
|
1.0
|
CA
|
A:ASP1048
|
4.9
|
101.3
|
1.0
|
O
|
A:ASP1055
|
4.9
|
111.1
|
1.0
|
|
Calcium binding site 7 out
of 17 in 8jxc
Go back to
Calcium Binding Sites List in 8jxc
Calcium binding site 7 out
of 17 in the Rat Megalin Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Rat Megalin Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4717
b:121.0
occ:1.00
|
OD1
|
A:ASP1087
|
2.3
|
128.4
|
1.0
|
OD2
|
A:ASP1091
|
2.3
|
128.8
|
1.0
|
O
|
A:GLN1089
|
2.3
|
122.7
|
1.0
|
OE2
|
A:GLU1098
|
2.3
|
137.6
|
1.0
|
OD2
|
A:ASP1097
|
2.3
|
137.0
|
1.0
|
O
|
A:TRP1084
|
2.3
|
123.7
|
1.0
|
CD
|
A:GLU1098
|
3.4
|
137.9
|
1.0
|
C
|
A:GLN1089
|
3.4
|
123.8
|
1.0
|
C
|
A:TRP1084
|
3.5
|
117.5
|
1.0
|
CG
|
A:ASP1091
|
3.5
|
124.9
|
1.0
|
CG
|
A:ASP1087
|
3.5
|
130.1
|
1.0
|
CG
|
A:ASP1097
|
3.5
|
133.1
|
1.0
|
N
|
A:ASP1087
|
3.6
|
128.3
|
1.0
|
N
|
A:GLN1089
|
3.8
|
125.9
|
1.0
|
CG
|
A:GLU1098
|
3.9
|
135.3
|
1.0
|
N
|
A:CYS1086
|
3.9
|
135.3
|
1.0
|
CA
|
A:GLN1089
|
4.0
|
121.4
|
1.0
|
CB
|
A:ASP1091
|
4.2
|
121.2
|
1.0
|
N
|
A:ASP1091
|
4.2
|
127.6
|
1.0
|
CB
|
A:GLN1089
|
4.2
|
120.5
|
1.0
|
CB
|
A:ASP1097
|
4.2
|
131.4
|
1.0
|
CA
|
A:TRP1084
|
4.2
|
116.5
|
1.0
|
O
|
A:ASP1097
|
4.3
|
134.1
|
1.0
|
OD2
|
A:ASP1087
|
4.3
|
129.5
|
1.0
|
CA
|
A:ASP1087
|
4.4
|
127.6
|
1.0
|
OD1
|
A:ASP1091
|
4.4
|
124.3
|
1.0
|
CB
|
A:TRP1084
|
4.4
|
114.1
|
1.0
|
CA
|
A:CYS1086
|
4.4
|
137.6
|
1.0
|
N
|
A:HIS1085
|
4.4
|
122.1
|
1.0
|
CB
|
A:ASP1087
|
4.5
|
128.9
|
1.0
|
OD1
|
A:ASP1097
|
4.5
|
130.8
|
1.0
|
OE1
|
A:GLU1098
|
4.5
|
137.9
|
1.0
|
N
|
A:ARG1088
|
4.5
|
129.7
|
1.0
|
C
|
A:ASP1087
|
4.5
|
127.2
|
1.0
|
N
|
A:ASN1090
|
4.5
|
133.6
|
1.0
|
C
|
A:HIS1085
|
4.5
|
125.1
|
1.0
|
C
|
A:CYS1086
|
4.6
|
136.7
|
1.0
|
CA
|
A:HIS1085
|
4.6
|
125.8
|
1.0
|
C
|
A:ASP1097
|
4.8
|
135.2
|
1.0
|
CA
|
A:ASN1090
|
4.9
|
135.2
|
1.0
|
CA
|
A:ASP1091
|
4.9
|
122.4
|
1.0
|
C
|
A:ARG1088
|
4.9
|
129.9
|
1.0
|
C
|
A:ASN1090
|
5.0
|
132.8
|
1.0
|
|
Calcium binding site 8 out
of 17 in 8jxc
Go back to
Calcium Binding Sites List in 8jxc
Calcium binding site 8 out
of 17 in the Rat Megalin Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Rat Megalin Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4718
b:109.5
occ:1.00
|
OD2
|
A:ASP1140
|
2.2
|
102.6
|
1.0
|
OD1
|
A:ASP1130
|
2.2
|
107.9
|
1.0
|
OD2
|
A:ASP1134
|
2.3
|
109.3
|
1.0
|
OE2
|
A:GLU1141
|
2.4
|
117.1
|
1.0
|
O
|
A:TRP1127
|
2.4
|
105.3
|
1.0
|
O
|
A:ASP1132
|
2.6
|
109.2
|
1.0
|
CG
|
A:ASP1130
|
3.1
|
108.7
|
1.0
|
CG
|
A:ASP1134
|
3.4
|
108.2
|
1.0
|
CG
|
A:ASP1140
|
3.4
|
107.7
|
1.0
|
CD
|
A:GLU1141
|
3.6
|
116.4
|
1.0
|
OD2
|
A:ASP1130
|
3.6
|
106.8
|
1.0
|
C
|
A:TRP1127
|
3.6
|
101.5
|
1.0
|
C
|
A:ASP1132
|
3.7
|
102.7
|
1.0
|
N
|
A:ASP1130
|
3.9
|
102.9
|
1.0
|
N
|
A:ASP1132
|
4.0
|
104.4
|
1.0
|
N
|
A:CYS1129
|
4.1
|
118.9
|
1.0
|
CA
|
A:ASP1132
|
4.2
|
101.3
|
1.0
|
OD1
|
A:ASP1134
|
4.2
|
109.5
|
1.0
|
CB
|
A:ASP1134
|
4.2
|
103.2
|
1.0
|
CG
|
A:GLU1141
|
4.2
|
113.5
|
1.0
|
OD1
|
A:ASP1140
|
4.2
|
109.9
|
1.0
|
CB
|
A:ASP1130
|
4.3
|
103.1
|
1.0
|
CB
|
A:ASP1132
|
4.3
|
106.5
|
1.0
|
N
|
A:ASP1134
|
4.3
|
105.8
|
1.0
|
CB
|
A:ASP1140
|
4.3
|
110.2
|
1.0
|
CA
|
A:VAL1128
|
4.4
|
103.8
|
1.0
|
N
|
A:VAL1128
|
4.5
|
103.9
|
1.0
|
C
|
A:VAL1128
|
4.5
|
111.4
|
1.0
|
CA
|
A:ASP1130
|
4.5
|
103.0
|
1.0
|
OE1
|
A:GLU1141
|
4.5
|
116.7
|
1.0
|
CB
|
A:TRP1127
|
4.5
|
99.7
|
1.0
|
CA
|
A:TRP1127
|
4.6
|
100.6
|
1.0
|
O
|
A:ASP1140
|
4.6
|
111.0
|
1.0
|
N
|
A:THR1131
|
4.7
|
93.0
|
1.0
|
C
|
A:ASP1130
|
4.7
|
105.0
|
1.0
|
N
|
A:ASN1133
|
4.8
|
103.4
|
1.0
|
C
|
A:CYS1129
|
4.9
|
114.0
|
1.0
|
CA
|
A:CYS1129
|
4.9
|
115.6
|
1.0
|
CA
|
A:ASP1134
|
5.0
|
101.0
|
1.0
|
C
|
A:ASP1140
|
5.0
|
105.9
|
1.0
|
|
Calcium binding site 9 out
of 17 in 8jxc
Go back to
Calcium Binding Sites List in 8jxc
Calcium binding site 9 out
of 17 in the Rat Megalin Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Rat Megalin Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4719
b:120.5
occ:1.00
|
OD2
|
A:ASP1180
|
2.2
|
126.7
|
1.0
|
OD1
|
A:ASP1170
|
2.2
|
129.1
|
1.0
|
O
|
A:ASP1172
|
2.3
|
124.5
|
1.0
|
O
|
A:TYR1167
|
2.3
|
114.3
|
1.0
|
OE1
|
A:GLU1181
|
2.4
|
127.8
|
1.0
|
OD1
|
A:ASP1174
|
2.4
|
124.2
|
1.0
|
CG
|
A:ASP1170
|
3.2
|
129.2
|
1.0
|
CG
|
A:ASP1180
|
3.4
|
129.3
|
1.0
|
C
|
A:ASP1172
|
3.5
|
125.9
|
1.0
|
C
|
A:TYR1167
|
3.5
|
114.3
|
1.0
|
CD
|
A:GLU1181
|
3.6
|
126.8
|
1.0
|
CG
|
A:ASP1174
|
3.6
|
125.3
|
1.0
|
OD2
|
A:ASP1170
|
3.7
|
127.1
|
1.0
|
N
|
A:ASP1170
|
3.9
|
126.0
|
1.0
|
N
|
A:CYS1169
|
4.0
|
130.7
|
1.0
|
OD1
|
A:ASP1180
|
4.0
|
131.1
|
1.0
|
N
|
A:ASP1174
|
4.0
|
122.9
|
1.0
|
N
|
A:ASP1172
|
4.2
|
129.2
|
1.0
|
CB
|
A:ASP1174
|
4.2
|
120.4
|
1.0
|
CA
|
A:ASP1172
|
4.3
|
127.3
|
1.0
|
CA
|
A:VAL1168
|
4.3
|
120.2
|
1.0
|
CB
|
A:GLU1181
|
4.3
|
124.9
|
1.0
|
CB
|
A:ASP1170
|
4.3
|
126.2
|
1.0
|
N
|
A:VAL1168
|
4.4
|
111.5
|
1.0
|
OE2
|
A:GLU1181
|
4.4
|
125.0
|
1.0
|
CA
|
A:TYR1167
|
4.4
|
121.7
|
1.0
|
C
|
A:VAL1168
|
4.4
|
123.3
|
1.0
|
O
|
A:ASP1180
|
4.4
|
124.0
|
1.0
|
N
|
A:LYS1173
|
4.5
|
119.1
|
1.0
|
CG
|
A:GLU1181
|
4.5
|
125.7
|
1.0
|
CB
|
A:ASP1180
|
4.5
|
128.7
|
1.0
|
OD2
|
A:ASP1174
|
4.6
|
123.4
|
1.0
|
CA
|
A:ASP1170
|
4.6
|
124.5
|
1.0
|
CA
|
A:LYS1173
|
4.6
|
117.2
|
1.0
|
C
|
A:ASP1180
|
4.6
|
122.3
|
1.0
|
CB
|
A:TYR1167
|
4.6
|
125.9
|
1.0
|
CB
|
A:ASP1172
|
4.6
|
125.0
|
1.0
|
CA
|
A:CYS1169
|
4.7
|
128.2
|
1.0
|
C
|
A:LYS1173
|
4.8
|
118.0
|
1.0
|
CA
|
A:ASP1174
|
4.8
|
122.0
|
1.0
|
CA
|
A:GLU1181
|
4.8
|
122.6
|
1.0
|
C
|
A:CYS1169
|
4.8
|
128.2
|
1.0
|
N
|
A:GLU1181
|
4.8
|
120.2
|
1.0
|
N
|
A:GLY1171
|
4.9
|
128.6
|
1.0
|
C
|
A:ASP1170
|
5.0
|
126.8
|
1.0
|
|
Calcium binding site 10 out
of 17 in 8jxc
Go back to
Calcium Binding Sites List in 8jxc
Calcium binding site 10 out
of 17 in the Rat Megalin Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Rat Megalin Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4720
b:110.0
occ:1.00
|
OD1
|
A:ASP1209
|
2.2
|
111.6
|
1.0
|
OD2
|
A:ASP1213
|
2.2
|
116.3
|
1.0
|
O
|
A:TYR1206
|
2.3
|
105.7
|
1.0
|
OD2
|
A:ASP1219
|
2.3
|
113.5
|
1.0
|
OE2
|
A:GLU1220
|
2.3
|
115.3
|
1.0
|
O
|
A:VAL1211
|
2.4
|
104.4
|
1.0
|
OD2
|
A:ASP1209
|
2.7
|
110.3
|
1.0
|
CG
|
A:ASP1209
|
2.7
|
110.2
|
1.0
|
CD
|
A:GLU1220
|
3.2
|
113.8
|
1.0
|
CG
|
A:ASP1219
|
3.3
|
115.3
|
1.0
|
C
|
A:TYR1206
|
3.5
|
107.1
|
1.0
|
CG
|
A:ASP1213
|
3.5
|
112.4
|
1.0
|
C
|
A:VAL1211
|
3.6
|
100.3
|
1.0
|
CG
|
A:GLU1220
|
3.9
|
115.2
|
1.0
|
CB
|
A:ASP1219
|
3.9
|
113.2
|
1.0
|
CB
|
A:ASP1209
|
4.1
|
108.6
|
1.0
|
OE1
|
A:GLU1220
|
4.1
|
111.2
|
1.0
|
N
|
A:ASP1209
|
4.1
|
110.9
|
1.0
|
N
|
A:VAL1211
|
4.2
|
99.4
|
1.0
|
CB
|
A:TYR1206
|
4.2
|
109.9
|
1.0
|
CA
|
A:TYR1206
|
4.2
|
109.9
|
1.0
|
N
|
A:ASP1213
|
4.2
|
112.7
|
1.0
|
CB
|
A:ASP1213
|
4.3
|
108.3
|
1.0
|
OD1
|
A:ASP1219
|
4.3
|
118.7
|
1.0
|
CA
|
A:VAL1211
|
4.3
|
98.2
|
1.0
|
OD1
|
A:ASP1213
|
4.4
|
113.2
|
1.0
|
N
|
A:CYS1208
|
4.5
|
114.8
|
1.0
|
N
|
A:ARG1207
|
4.5
|
107.5
|
1.0
|
CB
|
A:VAL1211
|
4.5
|
95.2
|
1.0
|
CA
|
A:ARG1207
|
4.6
|
106.4
|
1.0
|
CA
|
A:ASP1209
|
4.6
|
110.7
|
1.0
|
N
|
A:TYR1212
|
4.6
|
100.9
|
1.0
|
C
|
A:ARG1207
|
4.8
|
108.0
|
1.0
|
CA
|
A:TYR1212
|
4.8
|
103.9
|
1.0
|
N
|
A:GLY1210
|
4.9
|
100.5
|
1.0
|
CA
|
A:ASP1213
|
4.9
|
112.5
|
1.0
|
C
|
A:TYR1212
|
4.9
|
107.5
|
1.0
|
N
|
A:GLU1220
|
5.0
|
113.4
|
1.0
|
|
Reference:
S.Goto,
A.Tsutsumi,
Y.Lee,
M.Hosojima,
H.Kabasawa,
K.Komochi,
S.Nagatoishi,
K.Takemoto,
K.Tsumoto,
T.Nishizawa,
M.Kikkawa,
A.Saito.
Cryo-Em Structures Elucidate the Multiligand Receptor Nature of Megalin. Proc.Natl.Acad.Sci.Usa V. 121 59121 2024.
ISSN: ESSN 1091-6490
PubMed: 38771880
DOI: 10.1073/PNAS.2318859121
Page generated: Fri Jul 19 10:25:21 2024
|