Calcium in PDB 8jxh: Rat Megalin Rap Complex Winga
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Rat Megalin Rap Complex Winga
(pdb code 8jxh). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Rat Megalin Rap Complex Winga, PDB code: 8jxh:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 8jxh
Go back to
Calcium Binding Sites List in 8jxh
Calcium binding site 1 out
of 16 in the Rat Megalin Rap Complex Winga
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Rat Megalin Rap Complex Winga within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4704
b:91.5
occ:1.00
|
OD2
|
A:ASP2731
|
2.2
|
68.8
|
1.0
|
OD1
|
A:ASP2721
|
2.2
|
74.4
|
1.0
|
O
|
A:TRP2718
|
2.2
|
60.5
|
1.0
|
O
|
A:ASP2723
|
2.3
|
78.1
|
1.0
|
OD2
|
A:ASP2725
|
2.3
|
76.1
|
1.0
|
OE2
|
A:GLU2732
|
2.3
|
69.1
|
1.0
|
CG
|
A:ASP2721
|
3.3
|
67.5
|
1.0
|
CG
|
A:ASP2725
|
3.3
|
81.0
|
1.0
|
CG
|
A:ASP2731
|
3.4
|
74.2
|
1.0
|
C
|
A:ASP2723
|
3.4
|
75.8
|
1.0
|
C
|
A:TRP2718
|
3.4
|
58.2
|
1.0
|
CD
|
A:GLU2732
|
3.5
|
58.7
|
1.0
|
CB
|
A:ASP2725
|
3.8
|
79.7
|
1.0
|
N
|
A:ASP2725
|
3.8
|
80.8
|
1.0
|
N
|
A:ASP2721
|
3.9
|
61.3
|
1.0
|
OD2
|
A:ASP2721
|
3.9
|
69.1
|
1.0
|
N
|
A:ASP2723
|
4.1
|
71.5
|
1.0
|
N
|
A:CYS2720
|
4.1
|
68.9
|
1.0
|
CG
|
A:GLU2732
|
4.1
|
63.0
|
1.0
|
CA
|
A:ASP2723
|
4.1
|
66.6
|
1.0
|
CA
|
A:TRP2718
|
4.2
|
57.4
|
1.0
|
CB
|
A:ASP2731
|
4.2
|
78.0
|
1.0
|
CB
|
A:TRP2718
|
4.2
|
60.1
|
1.0
|
OD1
|
A:ASP2731
|
4.3
|
78.1
|
1.0
|
CB
|
A:ASP2723
|
4.3
|
71.8
|
1.0
|
OD1
|
A:ASP2725
|
4.4
|
79.7
|
1.0
|
OE1
|
A:GLU2732
|
4.4
|
62.0
|
1.0
|
N
|
A:LYS2719
|
4.4
|
49.1
|
1.0
|
CA
|
A:ASP2725
|
4.5
|
78.0
|
1.0
|
CB
|
A:ASP2721
|
4.5
|
64.1
|
1.0
|
N
|
A:ASN2724
|
4.5
|
87.2
|
1.0
|
C
|
A:LYS2719
|
4.5
|
54.3
|
1.0
|
CA
|
A:ASP2721
|
4.6
|
63.3
|
1.0
|
CA
|
A:LYS2719
|
4.6
|
48.6
|
1.0
|
CG
|
A:ASP2723
|
4.7
|
75.3
|
1.0
|
CA
|
A:CYS2720
|
4.7
|
68.9
|
1.0
|
CA
|
A:ASN2724
|
4.7
|
87.4
|
1.0
|
O
|
A:ASP2731
|
4.8
|
80.0
|
1.0
|
OD2
|
A:ASP2723
|
4.8
|
75.1
|
1.0
|
C
|
A:ASN2724
|
4.8
|
86.7
|
1.0
|
C
|
A:ASP2731
|
4.8
|
74.7
|
1.0
|
C
|
A:ASP2721
|
4.8
|
62.5
|
1.0
|
C
|
A:CYS2720
|
4.8
|
65.4
|
1.0
|
N
|
A:ASN2722
|
5.0
|
68.4
|
1.0
|
|
Calcium binding site 2 out
of 16 in 8jxh
Go back to
Calcium Binding Sites List in 8jxh
Calcium binding site 2 out
of 16 in the Rat Megalin Rap Complex Winga
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Rat Megalin Rap Complex Winga within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4705
b:53.1
occ:1.00
|
OD1
|
A:ASP2762
|
2.2
|
43.0
|
1.0
|
OD2
|
A:ASP2772
|
2.2
|
49.2
|
1.0
|
O
|
A:TYR2759
|
2.3
|
55.8
|
1.0
|
OD2
|
A:ASP2766
|
2.3
|
63.6
|
1.0
|
OE2
|
A:GLU2773
|
2.4
|
43.9
|
1.0
|
O
|
A:TYR2764
|
2.4
|
58.4
|
1.0
|
CG
|
A:ASP2762
|
2.9
|
47.5
|
1.0
|
OD2
|
A:ASP2762
|
3.1
|
49.4
|
1.0
|
CG
|
A:ASP2772
|
3.2
|
48.8
|
1.0
|
CD
|
A:GLU2773
|
3.3
|
57.8
|
1.0
|
C
|
A:TYR2759
|
3.4
|
46.1
|
1.0
|
CG
|
A:ASP2766
|
3.5
|
56.6
|
1.0
|
C
|
A:TYR2764
|
3.5
|
54.2
|
1.0
|
CB
|
A:ASP2772
|
3.8
|
51.0
|
1.0
|
N
|
A:ASP2766
|
3.9
|
42.6
|
1.0
|
CB
|
A:TYR2759
|
3.9
|
47.5
|
1.0
|
CB
|
A:ASP2766
|
4.0
|
52.4
|
1.0
|
OE1
|
A:GLU2773
|
4.0
|
59.3
|
1.0
|
CA
|
A:TYR2759
|
4.1
|
43.1
|
1.0
|
CG
|
A:GLU2773
|
4.1
|
59.7
|
1.0
|
N
|
A:TYR2764
|
4.1
|
60.3
|
1.0
|
OD1
|
A:ASP2772
|
4.2
|
46.5
|
1.0
|
CA
|
A:TYR2764
|
4.2
|
58.2
|
1.0
|
CB
|
A:ASP2762
|
4.2
|
45.2
|
1.0
|
N
|
A:ASP2762
|
4.2
|
52.6
|
1.0
|
CB
|
A:TYR2764
|
4.2
|
62.6
|
1.0
|
OD1
|
A:ASP2766
|
4.5
|
50.6
|
1.0
|
N
|
A:ARG2760
|
4.5
|
30.7
|
1.0
|
N
|
A:ASN2765
|
4.5
|
46.1
|
1.0
|
O
|
A:ASP2772
|
4.5
|
47.7
|
1.0
|
N
|
A:CYS2761
|
4.6
|
49.4
|
1.0
|
CA
|
A:ASP2766
|
4.6
|
46.4
|
1.0
|
C
|
A:ASP2772
|
4.6
|
40.7
|
1.0
|
CA
|
A:ASP2762
|
4.7
|
46.7
|
1.0
|
CA
|
A:ARG2760
|
4.7
|
37.5
|
1.0
|
CA
|
A:ASN2765
|
4.8
|
53.6
|
1.0
|
CA
|
A:ASP2772
|
4.9
|
45.3
|
1.0
|
C
|
A:ASN2765
|
4.9
|
53.2
|
1.0
|
C
|
A:ARG2760
|
4.9
|
36.5
|
1.0
|
CG
|
A:TYR2759
|
4.9
|
50.4
|
1.0
|
|
Calcium binding site 3 out
of 16 in 8jxh
Go back to
Calcium Binding Sites List in 8jxh
Calcium binding site 3 out
of 16 in the Rat Megalin Rap Complex Winga
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Rat Megalin Rap Complex Winga within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4706
b:121.4
occ:1.00
|
OE2
|
A:GLU2815
|
2.3
|
137.7
|
1.0
|
O
|
A:TYR2799
|
2.3
|
132.8
|
1.0
|
OD1
|
A:ASN2802
|
2.3
|
132.1
|
1.0
|
O
|
A:ILE2804
|
2.4
|
128.1
|
1.0
|
OD2
|
A:ASP2814
|
2.5
|
127.2
|
1.0
|
CG
|
A:ASP2814
|
3.3
|
129.1
|
1.0
|
CG
|
A:ASN2802
|
3.3
|
132.1
|
1.0
|
ND2
|
A:ASN2806
|
3.3
|
114.7
|
1.0
|
OD1
|
A:ASP2814
|
3.4
|
128.6
|
1.0
|
CD
|
A:GLU2815
|
3.4
|
137.8
|
1.0
|
C
|
A:TYR2799
|
3.5
|
131.3
|
1.0
|
C
|
A:ILE2804
|
3.5
|
128.1
|
1.0
|
N
|
A:ASN2802
|
3.8
|
136.7
|
1.0
|
CG
|
A:ASN2806
|
3.8
|
115.0
|
1.0
|
N
|
A:CYS2801
|
3.8
|
144.8
|
1.0
|
ND2
|
A:ASN2802
|
3.8
|
130.6
|
1.0
|
CG
|
A:GLU2815
|
3.9
|
137.4
|
1.0
|
OD1
|
A:ASN2806
|
4.0
|
117.1
|
1.0
|
CA
|
A:VAL2800
|
4.0
|
129.2
|
1.0
|
C
|
A:VAL2800
|
4.1
|
133.3
|
1.0
|
N
|
A:ILE2804
|
4.2
|
129.1
|
1.0
|
N
|
A:VAL2800
|
4.2
|
129.8
|
1.0
|
N
|
A:ASN2806
|
4.4
|
114.8
|
1.0
|
N
|
A:ASN2805
|
4.4
|
126.3
|
1.0
|
CB
|
A:ASN2802
|
4.4
|
133.1
|
1.0
|
CA
|
A:ASN2805
|
4.4
|
125.3
|
1.0
|
CA
|
A:ILE2804
|
4.5
|
127.2
|
1.0
|
OE1
|
A:GLU2815
|
4.5
|
138.0
|
1.0
|
CA
|
A:TYR2799
|
4.5
|
130.7
|
1.0
|
N
|
A:GLY2803
|
4.5
|
143.6
|
1.0
|
CA
|
A:ASN2802
|
4.6
|
134.6
|
1.0
|
CA
|
A:CYS2801
|
4.6
|
143.1
|
1.0
|
C
|
A:ASN2805
|
4.6
|
123.3
|
1.0
|
CB
|
A:ASP2814
|
4.6
|
128.1
|
1.0
|
C
|
A:CYS2801
|
4.6
|
141.5
|
1.0
|
CB
|
A:ASN2806
|
4.8
|
114.5
|
1.0
|
C
|
A:ASN2802
|
4.9
|
135.5
|
1.0
|
O
|
A:ASP2814
|
5.0
|
126.7
|
1.0
|
O
|
A:VAL2800
|
5.0
|
130.8
|
1.0
|
|
Calcium binding site 4 out
of 16 in 8jxh
Go back to
Calcium Binding Sites List in 8jxh
Calcium binding site 4 out
of 16 in the Rat Megalin Rap Complex Winga
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Rat Megalin Rap Complex Winga within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4707
b:240.0
occ:1.00
|
OD1
|
A:ASP2854
|
2.3
|
234.7
|
1.0
|
O
|
A:PHE2841
|
2.3
|
235.7
|
1.0
|
O
|
A:ASP2846
|
2.3
|
230.3
|
1.0
|
OE2
|
A:GLU2855
|
2.3
|
241.6
|
1.0
|
OE1
|
A:GLU2855
|
2.7
|
240.7
|
1.0
|
CG
|
A:ASP2854
|
2.7
|
233.6
|
1.0
|
OD1
|
A:ASP2844
|
2.8
|
235.8
|
1.0
|
CD
|
A:GLU2855
|
2.8
|
240.6
|
1.0
|
O
|
A:ASP2854
|
3.2
|
234.9
|
1.0
|
CB
|
A:ASP2854
|
3.3
|
234.1
|
1.0
|
C
|
A:ASP2846
|
3.4
|
230.1
|
1.0
|
C
|
A:PHE2841
|
3.4
|
235.9
|
1.0
|
OD2
|
A:ASP2854
|
3.4
|
232.9
|
1.0
|
N
|
A:CYS2843
|
3.6
|
237.3
|
1.0
|
C
|
A:ASP2854
|
3.6
|
234.7
|
1.0
|
CG
|
A:ASP2844
|
3.7
|
234.2
|
1.0
|
N
|
A:ASP2844
|
3.8
|
236.0
|
1.0
|
CA
|
A:ASP2854
|
3.8
|
234.7
|
1.0
|
CA
|
A:LEU2842
|
3.8
|
238.4
|
1.0
|
N
|
A:ASP2846
|
3.9
|
231.0
|
1.0
|
C
|
A:LEU2842
|
4.0
|
238.3
|
1.0
|
N
|
A:LEU2842
|
4.1
|
238.7
|
1.0
|
CG
|
A:GLU2855
|
4.3
|
240.2
|
1.0
|
CA
|
A:ASP2846
|
4.3
|
230.1
|
1.0
|
N
|
A:ASN2847
|
4.3
|
226.6
|
1.0
|
OD2
|
A:ASP2844
|
4.3
|
233.2
|
1.0
|
N
|
A:GLY2845
|
4.3
|
237.9
|
1.0
|
CA
|
A:CYS2843
|
4.4
|
236.7
|
1.0
|
CA
|
A:ASN2847
|
4.4
|
225.9
|
1.0
|
OD1
|
A:ASP2848
|
4.5
|
219.1
|
1.0
|
N
|
A:GLU2855
|
4.5
|
240.1
|
1.0
|
CA
|
A:PHE2841
|
4.6
|
235.5
|
1.0
|
C
|
A:CYS2843
|
4.6
|
236.6
|
1.0
|
CA
|
A:ASP2844
|
4.6
|
234.9
|
1.0
|
CB
|
A:ASP2844
|
4.7
|
234.2
|
1.0
|
N
|
A:ASP2848
|
4.7
|
219.6
|
1.0
|
C
|
A:GLY2845
|
4.8
|
236.7
|
1.0
|
CB
|
A:PHE2841
|
4.8
|
235.3
|
1.0
|
C
|
A:ASP2844
|
4.9
|
235.4
|
1.0
|
O
|
A:LEU2842
|
5.0
|
237.6
|
1.0
|
OD1
|
A:ASN2847
|
5.0
|
227.6
|
1.0
|
|
Calcium binding site 5 out
of 16 in 8jxh
Go back to
Calcium Binding Sites List in 8jxh
Calcium binding site 5 out
of 16 in the Rat Megalin Rap Complex Winga
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Rat Megalin Rap Complex Winga within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4711
b:159.7
occ:1.00
|
OD1
|
B:ASP203
|
2.3
|
146.4
|
1.0
|
O
|
B:ASP205
|
2.3
|
144.8
|
1.0
|
OD2
|
B:ASP213
|
2.3
|
150.6
|
1.0
|
OD2
|
B:ASP207
|
2.3
|
150.7
|
1.0
|
O
|
B:TYR200
|
2.6
|
151.8
|
1.0
|
CG
|
B:ASP207
|
2.6
|
150.8
|
1.0
|
OE2
|
B:GLU214
|
2.7
|
150.3
|
1.0
|
OD1
|
B:ASP207
|
2.8
|
151.2
|
1.0
|
C
|
B:ASP205
|
3.3
|
145.4
|
1.0
|
CG
|
B:ASP203
|
3.4
|
143.9
|
1.0
|
CG
|
B:ASP213
|
3.5
|
151.8
|
1.0
|
CB
|
B:ASP207
|
3.6
|
151.1
|
1.0
|
CD
|
B:GLU214
|
3.6
|
150.2
|
1.0
|
C
|
B:TYR200
|
3.7
|
151.2
|
1.0
|
N
|
B:ASP205
|
3.8
|
141.7
|
1.0
|
CG
|
B:GLU214
|
3.8
|
150.4
|
1.0
|
CA
|
B:ASP205
|
3.9
|
144.4
|
1.0
|
N
|
B:ASP207
|
3.9
|
149.6
|
1.0
|
CB
|
B:ASP205
|
3.9
|
147.7
|
1.0
|
N
|
B:ASP203
|
4.0
|
145.4
|
1.0
|
OD2
|
B:ASP203
|
4.0
|
143.0
|
1.0
|
N
|
B:CYS202
|
4.1
|
152.1
|
1.0
|
NZ
|
D:LYS293
|
4.1
|
28.7
|
1.0
|
OD1
|
B:ASP213
|
4.2
|
153.2
|
1.0
|
CA
|
B:VAL201
|
4.3
|
152.6
|
1.0
|
N
|
B:ASN206
|
4.4
|
150.8
|
1.0
|
CA
|
B:ASP207
|
4.4
|
149.9
|
1.0
|
N
|
B:VAL201
|
4.4
|
154.6
|
1.0
|
CB
|
B:ASP203
|
4.5
|
143.1
|
1.0
|
C
|
B:VAL201
|
4.5
|
153.2
|
1.0
|
CA
|
B:ASP203
|
4.6
|
144.2
|
1.0
|
CB
|
B:ASP213
|
4.6
|
152.1
|
1.0
|
CA
|
B:TYR200
|
4.6
|
149.8
|
1.0
|
C
|
B:ASN206
|
4.7
|
150.2
|
1.0
|
C
|
B:ASP203
|
4.7
|
146.6
|
1.0
|
N
|
B:HIS204
|
4.7
|
141.9
|
1.0
|
OE1
|
B:GLU214
|
4.8
|
149.4
|
1.0
|
CA
|
B:ASN206
|
4.8
|
150.8
|
1.0
|
CB
|
B:TYR200
|
4.9
|
148.3
|
1.0
|
CA
|
B:CYS202
|
4.9
|
151.8
|
1.0
|
C
|
B:CYS202
|
4.9
|
150.7
|
1.0
|
CG
|
B:ASP205
|
5.0
|
146.8
|
1.0
|
|
Calcium binding site 6 out
of 16 in 8jxh
Go back to
Calcium Binding Sites List in 8jxh
Calcium binding site 6 out
of 16 in the Rat Megalin Rap Complex Winga
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Rat Megalin Rap Complex Winga within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4712
b:106.3
occ:1.00
|
O
|
B:ASP244
|
2.2
|
96.1
|
1.0
|
OD2
|
B:ASP252
|
2.3
|
91.8
|
1.0
|
OD1
|
B:ASP242
|
2.3
|
91.9
|
1.0
|
O
|
B:TRP239
|
2.3
|
81.1
|
1.0
|
OD2
|
B:ASP246
|
2.4
|
93.7
|
1.0
|
OE1
|
B:GLU253
|
2.7
|
92.8
|
1.0
|
OE2
|
B:GLU253
|
2.7
|
91.6
|
1.0
|
CD
|
B:GLU253
|
3.0
|
89.0
|
1.0
|
CG
|
B:ASP242
|
3.2
|
91.8
|
1.0
|
C
|
B:ASP244
|
3.4
|
98.8
|
1.0
|
CG
|
B:ASP252
|
3.4
|
93.0
|
1.0
|
CG
|
B:ASP246
|
3.5
|
96.1
|
1.0
|
C
|
B:TRP239
|
3.6
|
77.3
|
1.0
|
N
|
B:CYS241
|
3.7
|
89.3
|
1.0
|
OD2
|
B:ASP242
|
3.8
|
93.7
|
1.0
|
N
|
B:ASP242
|
3.8
|
88.0
|
1.0
|
N
|
B:ASP244
|
3.9
|
98.3
|
1.0
|
OD1
|
B:ASP252
|
4.1
|
94.8
|
1.0
|
CA
|
B:ASP244
|
4.1
|
98.5
|
1.0
|
CB
|
B:ASP246
|
4.3
|
94.5
|
1.0
|
CB
|
B:ASP242
|
4.4
|
86.9
|
1.0
|
OD1
|
B:ASP246
|
4.4
|
96.5
|
1.0
|
C
|
B:VAL240
|
4.4
|
76.1
|
1.0
|
CA
|
B:CYS241
|
4.4
|
85.1
|
1.0
|
N
|
B:ASP245
|
4.4
|
101.7
|
1.0
|
CA
|
B:VAL240
|
4.4
|
70.4
|
1.0
|
O
|
B:ASP252
|
4.5
|
99.8
|
1.0
|
N
|
B:VAL240
|
4.5
|
71.3
|
1.0
|
CA
|
B:TRP239
|
4.5
|
75.8
|
1.0
|
CA
|
B:ASP242
|
4.5
|
87.8
|
1.0
|
CB
|
B:ASP244
|
4.5
|
96.6
|
1.0
|
CG
|
B:GLU253
|
4.5
|
83.3
|
1.0
|
CB
|
B:ASP252
|
4.5
|
88.7
|
1.0
|
N
|
B:ASP246
|
4.6
|
95.3
|
1.0
|
C
|
B:CYS241
|
4.6
|
87.9
|
1.0
|
CA
|
B:ASP245
|
4.6
|
102.1
|
1.0
|
N
|
B:GLY243
|
4.6
|
99.2
|
1.0
|
CB
|
B:TRP239
|
4.6
|
74.9
|
1.0
|
C
|
B:ASP245
|
4.7
|
103.7
|
1.0
|
NZ
|
D:LYS343
|
4.8
|
19.8
|
1.0
|
C
|
B:ASP242
|
4.8
|
92.1
|
1.0
|
C
|
B:ASP252
|
4.9
|
92.2
|
1.0
|
|
Calcium binding site 7 out
of 16 in 8jxh
Go back to
Calcium Binding Sites List in 8jxh
Calcium binding site 7 out
of 16 in the Rat Megalin Rap Complex Winga
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Rat Megalin Rap Complex Winga within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4713
b:252.0
occ:1.00
|
OD2
|
B:ASP296
|
2.3
|
235.4
|
1.0
|
OD1
|
B:ASP286
|
2.3
|
237.7
|
1.0
|
O
|
B:VAL288
|
2.3
|
236.1
|
1.0
|
O
|
B:LYS283
|
2.3
|
226.6
|
1.0
|
OE2
|
B:GLU297
|
2.3
|
236.3
|
1.0
|
OD2
|
B:ASP290
|
2.5
|
234.2
|
1.0
|
N
|
B:ASP286
|
3.2
|
236.4
|
1.0
|
CG
|
B:ASP286
|
3.3
|
236.2
|
1.0
|
N
|
B:CYS285
|
3.3
|
235.8
|
1.0
|
CG
|
B:ASP290
|
3.4
|
233.8
|
1.0
|
CG
|
B:ASP296
|
3.4
|
234.4
|
1.0
|
C
|
B:VAL288
|
3.4
|
235.3
|
1.0
|
C
|
B:LYS283
|
3.5
|
225.2
|
1.0
|
CD
|
B:GLU297
|
3.5
|
235.7
|
1.0
|
N
|
B:VAL288
|
3.7
|
235.2
|
1.0
|
CA
|
B:CYS285
|
3.9
|
235.4
|
1.0
|
C
|
B:CYS285
|
4.0
|
234.8
|
1.0
|
C
|
B:VAL284
|
4.0
|
228.7
|
1.0
|
OD1
|
B:ASP296
|
4.0
|
234.4
|
1.0
|
O
|
B:ASP296
|
4.0
|
233.9
|
1.0
|
CA
|
B:ASP286
|
4.0
|
235.8
|
1.0
|
N
|
B:GLY287
|
4.1
|
233.8
|
1.0
|
CG
|
B:GLU297
|
4.1
|
236.1
|
1.0
|
CB
|
B:ASP290
|
4.1
|
233.7
|
1.0
|
CB
|
B:ASP286
|
4.1
|
235.8
|
1.0
|
OD2
|
B:ASP286
|
4.1
|
235.1
|
1.0
|
OD1
|
B:ASP290
|
4.1
|
233.5
|
1.0
|
CA
|
B:VAL288
|
4.2
|
234.9
|
1.0
|
N
|
B:ASP290
|
4.2
|
234.8
|
1.0
|
CA
|
B:VAL284
|
4.2
|
228.0
|
1.0
|
N
|
B:VAL284
|
4.3
|
227.6
|
1.0
|
C
|
B:ASP286
|
4.4
|
235.7
|
1.0
|
N
|
B:PRO289
|
4.4
|
233.2
|
1.0
|
CA
|
B:LYS283
|
4.5
|
224.7
|
1.0
|
OE1
|
B:GLU297
|
4.5
|
235.1
|
1.0
|
CB
|
B:ASP296
|
4.5
|
233.9
|
1.0
|
CA
|
B:PRO289
|
4.6
|
232.7
|
1.0
|
C
|
B:PRO289
|
4.6
|
233.1
|
1.0
|
C
|
B:GLY287
|
4.7
|
233.3
|
1.0
|
C
|
B:ASP296
|
4.7
|
234.1
|
1.0
|
CB
|
B:VAL288
|
4.8
|
233.8
|
1.0
|
O
|
B:VAL284
|
4.8
|
227.9
|
1.0
|
CA
|
B:ASP290
|
4.8
|
234.4
|
1.0
|
CB
|
B:LYS283
|
4.9
|
224.8
|
1.0
|
CA
|
B:GLY287
|
5.0
|
233.0
|
1.0
|
|
Calcium binding site 8 out
of 16 in 8jxh
Go back to
Calcium Binding Sites List in 8jxh
Calcium binding site 8 out
of 16 in the Rat Megalin Rap Complex Winga
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Rat Megalin Rap Complex Winga within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4714
b:47.6
occ:1.00
|
OD1
|
B:ASP578
|
2.3
|
55.5
|
1.0
|
O
|
B:PRO601
|
2.4
|
69.3
|
1.0
|
OG1
|
B:THR1131
|
2.5
|
75.1
|
1.0
|
O
|
B:SER575
|
2.6
|
66.7
|
1.0
|
OD2
|
B:ASP578
|
2.7
|
71.3
|
1.0
|
CG
|
B:ASP578
|
2.8
|
63.7
|
1.0
|
CB
|
B:THR1131
|
3.3
|
67.5
|
1.0
|
O
|
B:THR1131
|
3.5
|
73.1
|
1.0
|
C
|
B:PRO601
|
3.6
|
64.8
|
1.0
|
C
|
B:SER575
|
3.7
|
59.5
|
1.0
|
OD1
|
B:ASP1132
|
3.9
|
83.5
|
1.0
|
O
|
B:ARG576
|
4.0
|
73.2
|
1.0
|
C
|
B:THR1131
|
4.1
|
70.2
|
1.0
|
CA
|
B:ARG576
|
4.2
|
53.3
|
1.0
|
CG2
|
B:THR1131
|
4.3
|
70.7
|
1.0
|
N
|
B:ARG576
|
4.3
|
53.4
|
1.0
|
CB
|
B:ASP578
|
4.3
|
62.0
|
1.0
|
CA
|
B:THR1131
|
4.3
|
66.8
|
1.0
|
C
|
B:ARG576
|
4.4
|
61.1
|
1.0
|
CA
|
B:PRO601
|
4.4
|
59.9
|
1.0
|
N
|
B:HIS602
|
4.6
|
58.2
|
1.0
|
CA
|
B:HIS602
|
4.7
|
59.0
|
1.0
|
CA
|
B:SER575
|
4.7
|
52.4
|
1.0
|
O
|
B:ASP1130
|
4.7
|
81.3
|
1.0
|
CB
|
B:HIS602
|
4.9
|
55.5
|
1.0
|
ND1
|
B:HIS602
|
4.9
|
51.4
|
1.0
|
NE
|
B:ARG1161
|
4.9
|
73.7
|
1.0
|
CZ
|
B:ARG1161
|
5.0
|
73.9
|
1.0
|
|
Calcium binding site 9 out
of 16 in 8jxh
Go back to
Calcium Binding Sites List in 8jxh
Calcium binding site 9 out
of 16 in the Rat Megalin Rap Complex Winga
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Rat Megalin Rap Complex Winga within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4715
b:58.8
occ:1.00
|
OD1
|
B:ASP891
|
2.4
|
71.0
|
1.0
|
O
|
B:ALA888
|
2.5
|
63.4
|
1.0
|
O
|
B:THR913
|
2.9
|
59.0
|
1.0
|
CG
|
B:ASP891
|
3.1
|
69.6
|
1.0
|
OD2
|
B:ASP891
|
3.1
|
66.5
|
1.0
|
C
|
B:ALA888
|
3.6
|
57.5
|
1.0
|
O
|
B:PHE889
|
3.6
|
56.9
|
1.0
|
C
|
B:THR913
|
4.1
|
62.5
|
1.0
|
CA
|
B:PHE889
|
4.1
|
52.1
|
1.0
|
C
|
B:PHE889
|
4.1
|
53.6
|
1.0
|
N
|
B:PHE889
|
4.3
|
58.9
|
1.0
|
OG1
|
B:THR913
|
4.5
|
65.2
|
1.0
|
CB
|
B:ASP891
|
4.5
|
66.1
|
1.0
|
ND1
|
B:HIS914
|
4.6
|
59.8
|
1.0
|
CA
|
B:ALA888
|
4.7
|
51.0
|
1.0
|
N
|
B:ASP891
|
4.8
|
54.5
|
1.0
|
CA
|
B:HIS914
|
4.9
|
50.4
|
1.0
|
N
|
B:HIS914
|
4.9
|
62.0
|
1.0
|
CA
|
B:THR913
|
5.0
|
53.9
|
1.0
|
|
Calcium binding site 10 out
of 16 in 8jxh
Go back to
Calcium Binding Sites List in 8jxh
Calcium binding site 10 out
of 16 in the Rat Megalin Rap Complex Winga
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Rat Megalin Rap Complex Winga within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4716
b:64.1
occ:1.00
|
OD1
|
B:ASP1045
|
2.2
|
87.9
|
1.0
|
OD2
|
B:ASP1055
|
2.2
|
86.4
|
1.0
|
OD2
|
B:ASP1049
|
2.3
|
81.2
|
1.0
|
OE2
|
B:GLU1056
|
2.3
|
92.2
|
1.0
|
O
|
B:PHE1042
|
2.3
|
75.5
|
1.0
|
O
|
B:VAL1047
|
2.4
|
84.2
|
1.0
|
CG
|
B:ASP1045
|
3.2
|
88.2
|
1.0
|
CG
|
B:ASP1049
|
3.4
|
78.0
|
1.0
|
CD
|
B:GLU1056
|
3.4
|
94.0
|
1.0
|
CG
|
B:ASP1055
|
3.4
|
90.5
|
1.0
|
C
|
B:PHE1042
|
3.5
|
75.3
|
1.0
|
C
|
B:VAL1047
|
3.5
|
78.5
|
1.0
|
OD2
|
B:ASP1045
|
3.6
|
88.5
|
1.0
|
CG
|
B:GLU1056
|
4.0
|
90.1
|
1.0
|
N
|
B:VAL1047
|
4.0
|
82.1
|
1.0
|
CB
|
B:ASP1049
|
4.1
|
71.8
|
1.0
|
N
|
B:ASP1045
|
4.1
|
82.8
|
1.0
|
N
|
B:ASP1049
|
4.1
|
72.2
|
1.0
|
CA
|
B:PHE1042
|
4.2
|
75.4
|
1.0
|
CA
|
B:VAL1047
|
4.2
|
77.7
|
1.0
|
CB
|
B:PHE1042
|
4.2
|
75.3
|
1.0
|
CB
|
B:ASP1055
|
4.3
|
87.3
|
1.0
|
OD1
|
B:ASP1055
|
4.3
|
95.5
|
1.0
|
OD1
|
B:ASP1049
|
4.3
|
76.1
|
1.0
|
CB
|
B:VAL1047
|
4.4
|
72.3
|
1.0
|
OE1
|
B:GLU1056
|
4.4
|
92.3
|
1.0
|
CB
|
B:ASP1045
|
4.4
|
83.2
|
1.0
|
N
|
B:CYS1044
|
4.5
|
96.5
|
1.0
|
N
|
B:ARG1043
|
4.5
|
81.6
|
1.0
|
N
|
B:ASP1048
|
4.6
|
80.0
|
1.0
|
CA
|
B:ASP1045
|
4.7
|
81.4
|
1.0
|
CA
|
B:ARG1043
|
4.7
|
80.9
|
1.0
|
C
|
B:ARG1043
|
4.7
|
86.7
|
1.0
|
CA
|
B:ASP1049
|
4.8
|
66.2
|
1.0
|
O
|
B:ASP1055
|
4.8
|
90.1
|
1.0
|
N
|
B:GLY1046
|
4.8
|
76.5
|
1.0
|
C
|
B:ASP1045
|
4.8
|
81.0
|
1.0
|
CA
|
B:ASP1048
|
4.9
|
81.3
|
1.0
|
C
|
B:ASP1055
|
4.9
|
88.8
|
1.0
|
C
|
B:ASP1048
|
4.9
|
85.5
|
1.0
|
|
Reference:
S.Goto,
A.Tsutsumi,
Y.Lee,
M.Hosojima,
H.Kabasawa,
K.Komochi,
S.Nagatoishi,
K.Takemoto,
K.Tsumoto,
T.Nishizawa,
M.Kikkawa,
A.Saito.
Cryo-Em Structures Elucidate the Multiligand Receptor Nature of Megalin. Proc.Natl.Acad.Sci.Usa V. 121 59121 2024.
ISSN: ESSN 1091-6490
PubMed: 38771880
DOI: 10.1073/PNAS.2318859121
Page generated: Fri Jul 19 10:42:03 2024
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