Calcium in PDB 8jxi: Rat Megalin Rap Complex Wingb
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Rat Megalin Rap Complex Wingb
(pdb code 8jxi). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Rat Megalin Rap Complex Wingb, PDB code: 8jxi:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 8jxi
Go back to
Calcium Binding Sites List in 8jxi
Calcium binding site 1 out
of 16 in the Rat Megalin Rap Complex Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Rat Megalin Rap Complex Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4711
b:159.6
occ:1.00
|
OD1
|
A:ASP203
|
2.2
|
148.3
|
1.0
|
OD2
|
A:ASP213
|
2.2
|
156.8
|
1.0
|
O
|
A:TYR200
|
2.2
|
151.0
|
1.0
|
OE2
|
A:GLU214
|
2.2
|
152.6
|
1.0
|
O
|
A:ASP205
|
2.2
|
143.9
|
1.0
|
OD2
|
A:ASP207
|
2.3
|
151.3
|
1.0
|
CG
|
A:ASP207
|
3.1
|
151.2
|
1.0
|
CG
|
A:ASP213
|
3.1
|
157.8
|
1.0
|
CD
|
A:GLU214
|
3.1
|
152.2
|
1.0
|
CG
|
A:ASP203
|
3.1
|
147.8
|
1.0
|
CG
|
A:GLU214
|
3.4
|
152.2
|
1.0
|
C
|
A:ASP205
|
3.4
|
143.8
|
1.0
|
C
|
A:TYR200
|
3.5
|
149.4
|
1.0
|
OD2
|
A:ASP203
|
3.5
|
147.6
|
1.0
|
CB
|
A:ASP213
|
3.7
|
156.6
|
1.0
|
OD1
|
A:ASP207
|
3.8
|
150.8
|
1.0
|
CB
|
A:ASP207
|
3.9
|
151.8
|
1.0
|
N
|
A:ASP205
|
4.0
|
144.5
|
1.0
|
OD1
|
A:ASP213
|
4.0
|
156.8
|
1.0
|
N
|
A:ASP207
|
4.1
|
149.2
|
1.0
|
CA
|
A:ASP205
|
4.1
|
143.9
|
1.0
|
OE1
|
A:GLU214
|
4.2
|
151.8
|
1.0
|
N
|
A:ASP203
|
4.4
|
149.2
|
1.0
|
N
|
A:VAL201
|
4.4
|
154.2
|
1.0
|
CB
|
A:ASP203
|
4.4
|
147.7
|
1.0
|
CA
|
A:TYR200
|
4.4
|
148.7
|
1.0
|
CA
|
A:VAL201
|
4.4
|
155.0
|
1.0
|
CB
|
A:ASP205
|
4.4
|
146.1
|
1.0
|
C
|
A:ASP213
|
4.5
|
155.8
|
1.0
|
N
|
A:ASN206
|
4.5
|
150.9
|
1.0
|
CB
|
A:TYR200
|
4.5
|
147.4
|
1.0
|
O
|
A:ASP213
|
4.6
|
155.6
|
1.0
|
CA
|
A:ASP207
|
4.7
|
150.8
|
1.0
|
CA
|
A:ASP203
|
4.7
|
148.4
|
1.0
|
CA
|
A:ASP213
|
4.7
|
157.2
|
1.0
|
CA
|
A:ASN206
|
4.7
|
153.2
|
1.0
|
C
|
A:ASP203
|
4.7
|
146.3
|
1.0
|
N
|
A:CYS202
|
4.7
|
152.6
|
1.0
|
N
|
A:GLU214
|
4.7
|
149.4
|
1.0
|
CB
|
A:GLU214
|
4.8
|
150.5
|
1.0
|
C
|
A:VAL201
|
4.8
|
155.2
|
1.0
|
N
|
A:HIS204
|
4.8
|
138.2
|
1.0
|
C
|
A:ASN206
|
4.8
|
151.9
|
1.0
|
NZ
|
C:LYS293
|
4.9
|
34.5
|
1.0
|
|
Calcium binding site 2 out
of 16 in 8jxi
Go back to
Calcium Binding Sites List in 8jxi
Calcium binding site 2 out
of 16 in the Rat Megalin Rap Complex Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Rat Megalin Rap Complex Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4712
b:97.7
occ:1.00
|
OD2
|
A:ASP252
|
2.2
|
91.5
|
1.0
|
O
|
A:TRP239
|
2.2
|
78.6
|
1.0
|
OD1
|
A:ASP242
|
2.2
|
92.4
|
1.0
|
O
|
A:ASP244
|
2.2
|
101.6
|
1.0
|
OD2
|
A:ASP246
|
2.3
|
103.0
|
1.0
|
OE2
|
A:GLU253
|
2.3
|
100.3
|
1.0
|
CG
|
A:ASP242
|
3.1
|
91.9
|
1.0
|
C
|
A:ASP244
|
3.4
|
101.4
|
1.0
|
CD
|
A:GLU253
|
3.4
|
96.4
|
1.0
|
CG
|
A:ASP246
|
3.4
|
102.2
|
1.0
|
CG
|
A:ASP252
|
3.4
|
96.5
|
1.0
|
C
|
A:TRP239
|
3.4
|
72.9
|
1.0
|
OD2
|
A:ASP242
|
3.6
|
87.8
|
1.0
|
N
|
A:ASP244
|
3.7
|
98.1
|
1.0
|
CG
|
A:GLU253
|
3.8
|
92.6
|
1.0
|
N
|
A:ASP242
|
3.9
|
85.9
|
1.0
|
N
|
A:CYS241
|
4.0
|
85.5
|
1.0
|
CA
|
A:ASP244
|
4.0
|
100.0
|
1.0
|
OD1
|
A:ASP246
|
4.1
|
101.8
|
1.0
|
OD1
|
A:ASP252
|
4.2
|
101.2
|
1.0
|
CA
|
A:VAL240
|
4.3
|
81.5
|
1.0
|
CB
|
A:ASP242
|
4.3
|
92.8
|
1.0
|
N
|
A:VAL240
|
4.3
|
78.6
|
1.0
|
CB
|
A:ASP244
|
4.4
|
101.2
|
1.0
|
CB
|
A:ASP246
|
4.4
|
100.8
|
1.0
|
CA
|
A:TRP239
|
4.4
|
72.6
|
1.0
|
C
|
A:VAL240
|
4.4
|
84.2
|
1.0
|
CB
|
A:ASP252
|
4.4
|
95.7
|
1.0
|
N
|
A:GLY243
|
4.4
|
98.0
|
1.0
|
OE1
|
A:GLU253
|
4.5
|
95.0
|
1.0
|
N
|
A:ASP245
|
4.5
|
98.7
|
1.0
|
N
|
A:ASP246
|
4.5
|
95.4
|
1.0
|
CA
|
A:ASP242
|
4.5
|
87.9
|
1.0
|
CB
|
A:TRP239
|
4.5
|
78.2
|
1.0
|
O
|
A:ASP252
|
4.7
|
99.8
|
1.0
|
NZ
|
C:LYS343
|
4.8
|
42.9
|
1.0
|
CA
|
A:CYS241
|
4.8
|
81.6
|
1.0
|
C
|
A:ASP242
|
4.8
|
91.3
|
1.0
|
C
|
A:CYS241
|
4.8
|
86.1
|
1.0
|
CG
|
A:ASP244
|
4.8
|
106.6
|
1.0
|
CA
|
A:ASP245
|
4.8
|
100.2
|
1.0
|
C
|
A:GLY243
|
4.9
|
92.1
|
1.0
|
C
|
A:ASP252
|
4.9
|
97.0
|
1.0
|
C
|
A:ASP245
|
5.0
|
97.5
|
1.0
|
|
Calcium binding site 3 out
of 16 in 8jxi
Go back to
Calcium Binding Sites List in 8jxi
Calcium binding site 3 out
of 16 in the Rat Megalin Rap Complex Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Rat Megalin Rap Complex Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4713
b:233.3
occ:1.00
|
OD2
|
A:ASP290
|
2.3
|
223.7
|
1.0
|
OD2
|
A:ASP296
|
2.3
|
222.3
|
1.0
|
OE2
|
A:GLU297
|
2.4
|
218.7
|
1.0
|
OD1
|
A:ASP286
|
2.4
|
222.1
|
1.0
|
O
|
A:VAL288
|
2.5
|
225.2
|
1.0
|
O
|
A:LYS283
|
2.5
|
213.4
|
1.0
|
OD1
|
A:ASP290
|
2.7
|
223.5
|
1.0
|
CG
|
A:ASP290
|
2.8
|
223.6
|
1.0
|
N
|
A:CYS285
|
3.3
|
217.7
|
1.0
|
CG
|
A:ASP296
|
3.3
|
221.5
|
1.0
|
CG
|
A:ASP286
|
3.4
|
220.8
|
1.0
|
N
|
A:ASP286
|
3.4
|
221.9
|
1.0
|
CD
|
A:GLU297
|
3.5
|
217.8
|
1.0
|
C
|
A:LYS283
|
3.6
|
212.3
|
1.0
|
C
|
A:VAL288
|
3.7
|
225.0
|
1.0
|
CA
|
A:VAL284
|
3.8
|
212.6
|
1.0
|
CB
|
A:ASP296
|
3.8
|
221.4
|
1.0
|
C
|
A:VAL284
|
3.8
|
212.8
|
1.0
|
CA
|
A:CYS285
|
4.0
|
218.0
|
1.0
|
O
|
A:ASP296
|
4.0
|
221.5
|
1.0
|
CG
|
A:GLU297
|
4.0
|
217.9
|
1.0
|
OD2
|
A:ASP286
|
4.1
|
219.7
|
1.0
|
N
|
A:VAL284
|
4.1
|
213.3
|
1.0
|
CB
|
A:ASP290
|
4.2
|
223.2
|
1.0
|
N
|
A:VAL288
|
4.2
|
225.2
|
1.0
|
N
|
A:ASP290
|
4.2
|
223.7
|
1.0
|
C
|
A:CYS285
|
4.2
|
218.2
|
1.0
|
CB
|
A:ASP286
|
4.3
|
220.7
|
1.0
|
CA
|
A:ASP286
|
4.3
|
221.3
|
1.0
|
OD1
|
A:ASP296
|
4.3
|
220.3
|
1.0
|
N
|
A:GLY287
|
4.4
|
223.2
|
1.0
|
C
|
A:PRO289
|
4.4
|
222.8
|
1.0
|
CA
|
A:PRO289
|
4.4
|
222.5
|
1.0
|
N
|
A:PRO289
|
4.5
|
222.3
|
1.0
|
C
|
A:ASP296
|
4.5
|
221.0
|
1.0
|
OE1
|
A:GLU297
|
4.6
|
217.0
|
1.0
|
CA
|
A:VAL288
|
4.6
|
225.0
|
1.0
|
C
|
A:ASP286
|
4.8
|
221.5
|
1.0
|
CA
|
A:ASP290
|
4.8
|
223.3
|
1.0
|
CA
|
A:LYS283
|
4.8
|
211.0
|
1.0
|
CA
|
A:ASP296
|
4.8
|
220.5
|
1.0
|
O
|
A:VAL284
|
4.9
|
213.0
|
1.0
|
|
Calcium binding site 4 out
of 16 in 8jxi
Go back to
Calcium Binding Sites List in 8jxi
Calcium binding site 4 out
of 16 in the Rat Megalin Rap Complex Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Rat Megalin Rap Complex Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4714
b:43.2
occ:1.00
|
O
|
A:SER575
|
2.3
|
60.4
|
1.0
|
O
|
A:PRO601
|
2.4
|
61.8
|
1.0
|
OD1
|
A:ASP578
|
2.4
|
62.7
|
1.0
|
OG1
|
A:THR1131
|
2.9
|
74.6
|
1.0
|
O
|
A:THR1131
|
3.1
|
66.2
|
1.0
|
CG
|
A:ASP578
|
3.2
|
59.6
|
1.0
|
OD2
|
A:ASP578
|
3.2
|
58.7
|
1.0
|
C
|
A:SER575
|
3.4
|
53.8
|
1.0
|
CB
|
A:THR1131
|
3.6
|
69.0
|
1.0
|
C
|
A:PRO601
|
3.6
|
57.6
|
1.0
|
CA
|
A:ARG576
|
4.0
|
52.5
|
1.0
|
N
|
A:ARG576
|
4.1
|
54.0
|
1.0
|
O
|
A:ARG576
|
4.1
|
64.2
|
1.0
|
ND1
|
A:HIS602
|
4.2
|
44.6
|
1.0
|
C
|
A:THR1131
|
4.2
|
65.3
|
1.0
|
CA
|
A:HIS602
|
4.3
|
44.9
|
1.0
|
C
|
A:ARG576
|
4.3
|
56.8
|
1.0
|
CA
|
A:SER575
|
4.4
|
47.1
|
1.0
|
N
|
A:HIS602
|
4.4
|
44.9
|
1.0
|
CB
|
A:HIS602
|
4.4
|
45.4
|
1.0
|
CA
|
A:THR1131
|
4.5
|
68.6
|
1.0
|
CA
|
A:PRO601
|
4.6
|
58.0
|
1.0
|
CG
|
A:HIS602
|
4.6
|
44.3
|
1.0
|
CB
|
A:ASP578
|
4.6
|
60.8
|
1.0
|
CG2
|
A:THR1131
|
4.7
|
64.8
|
1.0
|
CB
|
A:SER575
|
5.0
|
50.6
|
1.0
|
|
Calcium binding site 5 out
of 16 in 8jxi
Go back to
Calcium Binding Sites List in 8jxi
Calcium binding site 5 out
of 16 in the Rat Megalin Rap Complex Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Rat Megalin Rap Complex Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4715
b:63.2
occ:1.00
|
O
|
A:ALA888
|
2.4
|
59.5
|
1.0
|
O
|
A:THR913
|
2.4
|
66.7
|
1.0
|
OD1
|
A:ASP891
|
2.5
|
69.0
|
1.0
|
OD2
|
A:ASP891
|
3.0
|
62.4
|
1.0
|
CG
|
A:ASP891
|
3.1
|
65.8
|
1.0
|
C
|
A:ALA888
|
3.6
|
53.0
|
1.0
|
C
|
A:THR913
|
3.7
|
63.7
|
1.0
|
O
|
A:PHE889
|
4.1
|
62.7
|
1.0
|
OG1
|
A:THR913
|
4.1
|
64.7
|
1.0
|
CA
|
A:PHE889
|
4.4
|
60.0
|
1.0
|
N
|
A:PHE889
|
4.4
|
61.8
|
1.0
|
C
|
A:PHE889
|
4.4
|
61.9
|
1.0
|
CA
|
A:ALA888
|
4.5
|
43.0
|
1.0
|
CA
|
A:THR913
|
4.5
|
57.2
|
1.0
|
N
|
A:HIS914
|
4.6
|
56.0
|
1.0
|
CA
|
A:HIS914
|
4.6
|
48.2
|
1.0
|
CB
|
A:ASP891
|
4.6
|
62.1
|
1.0
|
ND1
|
A:HIS914
|
4.8
|
61.8
|
1.0
|
CB
|
A:THR913
|
4.8
|
60.7
|
1.0
|
CB
|
A:HIS914
|
4.9
|
46.2
|
1.0
|
|
Calcium binding site 6 out
of 16 in 8jxi
Go back to
Calcium Binding Sites List in 8jxi
Calcium binding site 6 out
of 16 in the Rat Megalin Rap Complex Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Rat Megalin Rap Complex Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4716
b:84.2
occ:1.00
|
OD2
|
A:ASP1049
|
2.3
|
87.2
|
1.0
|
O
|
A:PHE1042
|
2.3
|
85.3
|
1.0
|
O
|
A:VAL1047
|
2.3
|
91.3
|
1.0
|
OD2
|
A:ASP1055
|
2.3
|
91.6
|
1.0
|
OE2
|
A:GLU1056
|
2.5
|
97.3
|
1.0
|
OE1
|
A:GLU1056
|
2.8
|
97.0
|
1.0
|
OD2
|
A:ASP1045
|
2.9
|
100.2
|
1.0
|
CD
|
A:GLU1056
|
3.0
|
96.0
|
1.0
|
CG
|
A:ASP1045
|
3.3
|
96.8
|
1.0
|
CG
|
A:ASP1049
|
3.4
|
88.1
|
1.0
|
CG
|
A:ASP1055
|
3.4
|
93.4
|
1.0
|
C
|
A:PHE1042
|
3.5
|
85.9
|
1.0
|
C
|
A:VAL1047
|
3.5
|
87.3
|
1.0
|
OD1
|
A:ASP1045
|
3.6
|
95.6
|
1.0
|
N
|
A:ASP1045
|
3.8
|
89.2
|
1.0
|
CB
|
A:ASP1055
|
3.9
|
93.5
|
1.0
|
N
|
A:VAL1047
|
4.0
|
88.5
|
1.0
|
CB
|
A:ASP1045
|
4.1
|
93.7
|
1.0
|
N
|
A:ASP1049
|
4.2
|
88.1
|
1.0
|
CB
|
A:ASP1049
|
4.2
|
87.8
|
1.0
|
OD1
|
A:ASP1049
|
4.2
|
92.7
|
1.0
|
CA
|
A:PHE1042
|
4.2
|
88.0
|
1.0
|
CB
|
A:PHE1042
|
4.3
|
90.5
|
1.0
|
N
|
A:CYS1044
|
4.3
|
100.4
|
1.0
|
CG2
|
A:VAL1047
|
4.3
|
84.4
|
1.0
|
CA
|
A:ASP1045
|
4.4
|
89.5
|
1.0
|
CA
|
A:VAL1047
|
4.4
|
84.5
|
1.0
|
N
|
A:GLY1046
|
4.4
|
87.1
|
1.0
|
CG
|
A:GLU1056
|
4.4
|
93.5
|
1.0
|
OD1
|
A:ASP1055
|
4.5
|
93.7
|
1.0
|
N
|
A:ARG1043
|
4.5
|
83.5
|
1.0
|
N
|
A:ASP1048
|
4.5
|
90.9
|
1.0
|
CA
|
A:ARG1043
|
4.6
|
83.7
|
1.0
|
CA
|
A:ASP1048
|
4.6
|
87.4
|
1.0
|
C
|
A:ASP1045
|
4.6
|
90.4
|
1.0
|
C
|
A:ARG1043
|
4.7
|
89.4
|
1.0
|
C
|
A:ASP1048
|
4.7
|
91.5
|
1.0
|
O
|
A:ASP1055
|
4.8
|
99.5
|
1.0
|
C
|
A:ASP1055
|
4.8
|
94.7
|
1.0
|
CA
|
A:ASP1049
|
4.9
|
87.6
|
1.0
|
C
|
A:CYS1044
|
4.9
|
96.2
|
1.0
|
CA
|
A:ASP1055
|
5.0
|
93.3
|
1.0
|
|
Calcium binding site 7 out
of 16 in 8jxi
Go back to
Calcium Binding Sites List in 8jxi
Calcium binding site 7 out
of 16 in the Rat Megalin Rap Complex Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Rat Megalin Rap Complex Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4717
b:118.5
occ:1.00
|
OD2
|
A:ASP1097
|
2.1
|
108.7
|
1.0
|
OD1
|
A:ASP1087
|
2.2
|
106.5
|
1.0
|
O
|
A:TRP1084
|
2.2
|
96.1
|
1.0
|
O
|
A:GLN1089
|
2.3
|
105.9
|
1.0
|
OD2
|
A:ASP1091
|
2.4
|
105.4
|
1.0
|
OE2
|
A:GLU1098
|
2.5
|
109.6
|
1.0
|
CG
|
A:ASP1097
|
3.2
|
109.0
|
1.0
|
CG
|
A:ASP1087
|
3.2
|
106.2
|
1.0
|
C
|
A:TRP1084
|
3.4
|
93.6
|
1.0
|
C
|
A:GLN1089
|
3.5
|
102.3
|
1.0
|
CG
|
A:ASP1091
|
3.5
|
102.8
|
1.0
|
CD
|
A:GLU1098
|
3.6
|
113.1
|
1.0
|
NH2
|
A:ARG422
|
3.6
|
93.5
|
1.0
|
OD2
|
A:ASP1087
|
3.8
|
107.5
|
1.0
|
CB
|
A:ASP1097
|
4.0
|
109.5
|
1.0
|
OD1
|
A:ASP1097
|
4.1
|
113.2
|
1.0
|
N
|
A:ASP1091
|
4.1
|
100.2
|
1.0
|
CG
|
A:GLU1098
|
4.1
|
112.1
|
1.0
|
CA
|
A:TRP1084
|
4.1
|
94.2
|
1.0
|
CB
|
A:TRP1084
|
4.2
|
97.2
|
1.0
|
N
|
A:ASP1087
|
4.2
|
105.2
|
1.0
|
N
|
A:GLN1089
|
4.3
|
110.8
|
1.0
|
CB
|
A:ASP1091
|
4.3
|
99.6
|
1.0
|
CA
|
A:GLN1089
|
4.3
|
105.0
|
1.0
|
OD1
|
A:ASP1091
|
4.3
|
106.7
|
1.0
|
CB
|
A:ASP1087
|
4.4
|
106.8
|
1.0
|
N
|
A:CYS1086
|
4.4
|
105.2
|
1.0
|
N
|
A:HIS1085
|
4.5
|
98.8
|
1.0
|
N
|
A:ASN1090
|
4.5
|
103.2
|
1.0
|
CB
|
A:GLN1089
|
4.5
|
101.2
|
1.0
|
OE1
|
A:GLU1098
|
4.5
|
115.2
|
1.0
|
CA
|
A:ASN1090
|
4.6
|
108.1
|
1.0
|
CA
|
A:HIS1085
|
4.7
|
100.4
|
1.0
|
CA
|
A:ASP1087
|
4.7
|
105.4
|
1.0
|
C
|
A:ASN1090
|
4.8
|
107.1
|
1.0
|
C
|
A:HIS1085
|
4.8
|
99.1
|
1.0
|
CA
|
A:ASP1091
|
4.8
|
97.7
|
1.0
|
C
|
A:ASP1097
|
4.9
|
109.5
|
1.0
|
C
|
A:ASP1087
|
4.9
|
105.9
|
1.0
|
O
|
A:ASP1097
|
4.9
|
110.4
|
1.0
|
CZ
|
A:ARG422
|
4.9
|
89.6
|
1.0
|
|
Calcium binding site 8 out
of 16 in 8jxi
Go back to
Calcium Binding Sites List in 8jxi
Calcium binding site 8 out
of 16 in the Rat Megalin Rap Complex Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Rat Megalin Rap Complex Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4718
b:74.7
occ:1.00
|
OD2
|
A:ASP1140
|
2.2
|
81.8
|
1.0
|
OD1
|
A:ASP1130
|
2.2
|
78.0
|
1.0
|
OD2
|
A:ASP1134
|
2.2
|
86.7
|
1.0
|
O
|
A:ASP1132
|
2.4
|
87.0
|
1.0
|
OE2
|
A:GLU1141
|
2.4
|
83.6
|
1.0
|
O
|
A:TRP1127
|
2.5
|
88.1
|
1.0
|
CG
|
A:ASP1130
|
3.2
|
79.3
|
1.0
|
CG
|
A:ASP1140
|
3.4
|
87.4
|
1.0
|
CG
|
A:ASP1134
|
3.4
|
86.7
|
1.0
|
CD
|
A:GLU1141
|
3.4
|
82.5
|
1.0
|
C
|
A:ASP1132
|
3.5
|
80.9
|
1.0
|
OD2
|
A:ASP1130
|
3.6
|
81.9
|
1.0
|
C
|
A:TRP1127
|
3.7
|
82.8
|
1.0
|
CG
|
A:GLU1141
|
4.0
|
81.9
|
1.0
|
N
|
A:ASP1132
|
4.0
|
68.5
|
1.0
|
CB
|
A:ASP1134
|
4.0
|
81.2
|
1.0
|
N
|
A:ASP1134
|
4.0
|
75.9
|
1.0
|
CB
|
A:ASP1140
|
4.1
|
88.0
|
1.0
|
CA
|
A:ASP1132
|
4.1
|
72.0
|
1.0
|
N
|
A:ASP1130
|
4.2
|
78.4
|
1.0
|
CB
|
A:ASP1132
|
4.2
|
77.8
|
1.0
|
CB
|
A:TRP1127
|
4.3
|
82.6
|
1.0
|
OD1
|
A:ASP1140
|
4.3
|
91.7
|
1.0
|
CB
|
A:ASP1130
|
4.4
|
74.6
|
1.0
|
OD1
|
A:ASP1134
|
4.4
|
86.5
|
1.0
|
OE1
|
A:GLU1141
|
4.5
|
85.3
|
1.0
|
CA
|
A:TRP1127
|
4.5
|
83.3
|
1.0
|
N
|
A:CYS1129
|
4.5
|
91.0
|
1.0
|
N
|
A:VAL1128
|
4.6
|
79.5
|
1.0
|
N
|
A:ASN1133
|
4.6
|
78.8
|
1.0
|
CA
|
A:VAL1128
|
4.6
|
81.4
|
1.0
|
CA
|
A:ASP1130
|
4.7
|
77.3
|
1.0
|
CA
|
A:ASP1134
|
4.7
|
77.9
|
1.0
|
O
|
A:ASP1140
|
4.8
|
93.4
|
1.0
|
C
|
A:ASP1130
|
4.8
|
81.8
|
1.0
|
C
|
A:ASP1140
|
4.8
|
90.7
|
1.0
|
C
|
A:VAL1128
|
4.8
|
87.8
|
1.0
|
N
|
A:THR1131
|
4.8
|
72.8
|
1.0
|
CA
|
A:ASN1133
|
4.9
|
79.8
|
1.0
|
CD1
|
A:ILE1123
|
4.9
|
93.8
|
1.0
|
|
Calcium binding site 9 out
of 16 in 8jxi
Go back to
Calcium Binding Sites List in 8jxi
Calcium binding site 9 out
of 16 in the Rat Megalin Rap Complex Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Rat Megalin Rap Complex Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4719
b:73.4
occ:1.00
|
O
|
A:ASP1172
|
2.3
|
92.5
|
1.0
|
OE1
|
A:GLU1181
|
2.4
|
94.6
|
1.0
|
OD1
|
A:ASP1170
|
2.4
|
101.5
|
1.0
|
O
|
A:TYR1167
|
2.5
|
86.7
|
1.0
|
OD1
|
A:ASP1180
|
2.6
|
94.4
|
1.0
|
OD2
|
A:ASP1174
|
2.8
|
79.5
|
1.0
|
CG
|
A:ASP1170
|
3.4
|
100.1
|
1.0
|
CG
|
A:ASP1180
|
3.5
|
97.3
|
1.0
|
CD
|
A:GLU1181
|
3.6
|
96.9
|
1.0
|
C
|
A:ASP1172
|
3.6
|
92.1
|
1.0
|
C
|
A:TYR1167
|
3.7
|
83.8
|
1.0
|
CG
|
A:ASP1174
|
3.8
|
83.8
|
1.0
|
N
|
A:ASP1170
|
3.9
|
97.0
|
1.0
|
CB
|
A:ASP1174
|
4.1
|
81.2
|
1.0
|
OD1
|
A:ASP1172
|
4.1
|
93.2
|
1.0
|
OD2
|
A:ASP1170
|
4.1
|
100.5
|
1.0
|
OD2
|
A:ASP1180
|
4.1
|
98.7
|
1.0
|
N
|
A:ASP1174
|
4.2
|
88.3
|
1.0
|
N
|
A:CYS1169
|
4.2
|
95.7
|
1.0
|
N
|
A:ASP1172
|
4.2
|
92.8
|
1.0
|
CB
|
A:GLU1181
|
4.3
|
91.9
|
1.0
|
CB
|
A:ASP1170
|
4.3
|
95.8
|
1.0
|
C
|
A:LYS1173
|
4.3
|
87.4
|
1.0
|
CG
|
A:GLU1181
|
4.4
|
95.4
|
1.0
|
OE2
|
A:GLU1181
|
4.4
|
94.3
|
1.0
|
CA
|
A:LYS1173
|
4.4
|
82.7
|
1.0
|
N
|
A:LYS1173
|
4.4
|
84.4
|
1.0
|
CA
|
A:TYR1167
|
4.5
|
83.2
|
1.0
|
CA
|
A:ASP1172
|
4.6
|
91.9
|
1.0
|
CA
|
A:VAL1168
|
4.6
|
87.0
|
1.0
|
CB
|
A:TYR1167
|
4.6
|
87.5
|
1.0
|
N
|
A:VAL1168
|
4.6
|
83.8
|
1.0
|
N
|
A:GLY1171
|
4.6
|
93.1
|
1.0
|
CB
|
A:ASP1180
|
4.6
|
94.3
|
1.0
|
CA
|
A:ASP1170
|
4.6
|
98.4
|
1.0
|
O
|
A:ASP1180
|
4.6
|
100.6
|
1.0
|
C
|
A:VAL1168
|
4.7
|
89.7
|
1.0
|
C
|
A:ASP1180
|
4.7
|
98.6
|
1.0
|
CA
|
A:ASP1174
|
4.8
|
81.5
|
1.0
|
CA
|
A:CYS1169
|
4.8
|
91.2
|
1.0
|
N
|
A:GLU1181
|
4.9
|
93.5
|
1.0
|
C
|
A:CYS1169
|
4.9
|
94.4
|
1.0
|
CA
|
A:GLU1181
|
4.9
|
90.4
|
1.0
|
OD1
|
A:ASP1174
|
4.9
|
84.0
|
1.0
|
O
|
A:LYS1173
|
5.0
|
85.7
|
1.0
|
|
Calcium binding site 10 out
of 16 in 8jxi
Go back to
Calcium Binding Sites List in 8jxi
Calcium binding site 10 out
of 16 in the Rat Megalin Rap Complex Wingb
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Rat Megalin Rap Complex Wingb within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4720
b:100.8
occ:1.00
|
O
|
A:TYR1206
|
2.2
|
96.2
|
1.0
|
OD1
|
A:ASP1209
|
2.2
|
90.2
|
1.0
|
OD2
|
A:ASP1213
|
2.2
|
95.4
|
1.0
|
O
|
A:VAL1211
|
2.3
|
93.2
|
1.0
|
OE2
|
A:GLU1220
|
2.3
|
103.8
|
1.0
|
OD2
|
A:ASP1209
|
2.4
|
93.0
|
1.0
|
OD2
|
A:ASP1219
|
2.5
|
106.7
|
1.0
|
CG
|
A:ASP1209
|
2.6
|
89.9
|
1.0
|
CD
|
A:GLU1220
|
3.2
|
104.1
|
1.0
|
C
|
A:TYR1206
|
3.4
|
95.1
|
1.0
|
CG
|
A:ASP1213
|
3.4
|
90.8
|
1.0
|
C
|
A:VAL1211
|
3.5
|
87.5
|
1.0
|
CG
|
A:ASP1219
|
3.7
|
104.2
|
1.0
|
CG
|
A:GLU1220
|
4.0
|
103.1
|
1.0
|
OE1
|
A:GLU1220
|
4.0
|
105.7
|
1.0
|
CB
|
A:ASP1209
|
4.1
|
90.1
|
1.0
|
N
|
A:VAL1211
|
4.1
|
82.7
|
1.0
|
CB
|
A:ASP1213
|
4.1
|
89.0
|
1.0
|
CA
|
A:TYR1206
|
4.1
|
92.8
|
1.0
|
N
|
A:ASP1213
|
4.2
|
89.5
|
1.0
|
CA
|
A:VAL1211
|
4.2
|
82.1
|
1.0
|
CB
|
A:TYR1206
|
4.3
|
93.1
|
1.0
|
CB
|
A:ASP1219
|
4.3
|
102.4
|
1.0
|
N
|
A:ARG1207
|
4.4
|
96.1
|
1.0
|
OD1
|
A:ASP1213
|
4.4
|
92.0
|
1.0
|
N
|
A:ASP1209
|
4.4
|
96.4
|
1.0
|
CB
|
A:VAL1211
|
4.4
|
79.3
|
1.0
|
N
|
A:TYR1212
|
4.5
|
92.2
|
1.0
|
NH2
|
A:ARG931
|
4.5
|
73.8
|
1.0
|
CA
|
A:ARG1207
|
4.5
|
97.7
|
1.0
|
OD1
|
A:ASP1219
|
4.6
|
102.1
|
1.0
|
CA
|
A:ASP1209
|
4.7
|
94.2
|
1.0
|
C
|
A:TYR1212
|
4.7
|
90.4
|
1.0
|
N
|
A:CYS1208
|
4.7
|
105.9
|
1.0
|
CA
|
A:TYR1212
|
4.7
|
88.6
|
1.0
|
NH1
|
A:ARG931
|
4.7
|
76.4
|
1.0
|
CA
|
A:ASP1213
|
4.8
|
90.0
|
1.0
|
N
|
A:GLY1210
|
4.8
|
86.1
|
1.0
|
C
|
A:ARG1207
|
4.9
|
97.7
|
1.0
|
|
Reference:
S.Goto,
A.Tsutsumi,
Y.Lee,
M.Hosojima,
H.Kabasawa,
K.Komochi,
S.Nagatoishi,
K.Takemoto,
K.Tsumoto,
T.Nishizawa,
M.Kikkawa,
A.Saito.
Cryo-Em Structures Elucidate the Multiligand Receptor Nature of Megalin. Proc.Natl.Acad.Sci.Usa V. 121 59121 2024.
ISSN: ESSN 1091-6490
PubMed: 38771880
DOI: 10.1073/PNAS.2318859121
Page generated: Fri Jul 19 10:46:52 2024
|