Calcium in PDB 8ov0: MUC5AC CYSD7 Amino Acids 3518-3626

Protein crystallography data

The structure of MUC5AC CYSD7 Amino Acids 3518-3626, PDB code: 8ov0 was solved by L.Khmelnitsky, A.Milo, O.Dym, D.Fass, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.00 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 30.659, 22.921, 66.231, 90, 94.91, 90
R / Rfree (%) 17.9 / 22.7

Other elements in 8ov0:

The structure of MUC5AC CYSD7 Amino Acids 3518-3626 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the MUC5AC CYSD7 Amino Acids 3518-3626 (pdb code 8ov0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the MUC5AC CYSD7 Amino Acids 3518-3626, PDB code: 8ov0:

Calcium binding site 1 out of 1 in 8ov0

Go back to Calcium Binding Sites List in 8ov0
Calcium binding site 1 out of 1 in the MUC5AC CYSD7 Amino Acids 3518-3626


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of MUC5AC CYSD7 Amino Acids 3518-3626 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca3701

b:8.6
occ:1.00
OE2 A:GLU3545 2.3 10.4 1.0
O A:ASP3533 2.4 13.0 1.0
OD1 A:ASP3531 2.4 11.1 1.0
OD1 A:ASN3610 2.4 7.5 1.0
OD2 A:ASP3543 2.5 9.1 1.0
O A:TYR3611 2.5 8.8 1.0
OD1 A:ASP3543 2.6 14.4 1.0
CG A:ASP3543 2.9 13.4 1.0
CD A:GLU3545 3.3 9.6 1.0
C A:ASP3533 3.4 10.1 1.0
CG A:ASP3531 3.5 13.1 1.0
CG A:ASN3610 3.5 9.3 1.0
C A:TYR3611 3.6 7.0 1.0
N A:TYR3611 3.7 5.0 1.0
CG A:GLU3545 3.8 11.0 1.0
N A:ASP3533 4.0 6.5 1.0
ND2 A:ASN3610 4.1 10.3 1.0
OD2 A:ASP3531 4.2 10.8 1.0
CA A:ASP3533 4.2 7.4 1.0
CA A:TYR3611 4.2 5.6 1.0
O A:HOH3857 4.2 16.4 1.0
OE1 A:GLU3545 4.3 9.9 1.0
N A:PHE3534 4.3 10.4 1.0
CB A:ASP3543 4.4 9.0 1.0
C A:ASN3610 4.4 6.6 1.0
CA A:ASP3531 4.4 8.5 1.0
CA A:PHE3534 4.5 11.8 1.0
CB A:ASP3531 4.5 9.1 1.0
CA A:ASN3610 4.6 8.4 1.0
CB A:ASP3533 4.6 11.0 1.0
C A:ASP3531 4.6 8.7 1.0
CB A:ASN3610 4.7 7.4 1.0
N A:VAL3532 4.7 9.4 1.0
N A:GLU3612 4.8 6.3 1.0
CB A:TYR3611 4.9 7.1 1.0

Reference:

L.Khmelnitsky, A.Milo, O.Dym, D.Fass. Diversity of Cysd Domains in Gel-Forming Mucins. Febs J. 2023.
ISSN: ISSN 1742-464X
PubMed: 37526947
DOI: 10.1111/FEBS.16918
Page generated: Fri Jul 19 11:02:28 2024

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