Calcium in PDB 8qci: Fcgbp D10 Assembly Segment

The structure of Fcgbp D10 Assembly Segment, PDB code: 8qci was solved by N.Yeshaya, D.Fass, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.49 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.716, 54.321, 129.106, 90, 90, 90
R / Rfree (%)	19.6 / 25.7

The binding sites of Calcium atom in the Fcgbp D10 Assembly Segment (pdb code 8qci). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Fcgbp D10 Assembly Segment, PDB code: 8qci:

Calcium binding site 1 out of 1 in the Fcgbp D10 Assembly Segment


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Fcgbp D10 Assembly Segment within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca4404 b:32.4 occ:1.00 OD2 B:ASP4087 2.2 28.4 1.0 OD1 B:ASN4219 2.3 28.1 1.0 O B:ASN4223 2.3 31.3 1.0 OD1 B:ASP4227 2.4 28.6 1.0 OD1 B:ASN4226 2.4 34.1 1.0 OD1 B:ASP4221 2.5 30.9 1.0 CG B:ASP4221 3.2 38.4 1.0 CG B:ASP4227 3.3 37.0 1.0 CG B:ASN4219 3.4 31.2 1.0 C B:ASN4223 3.4 39.3 1.0 CG B:ASP4087 3.4 29.2 1.0 CG B:ASN4226 3.5 36.3 1.0 OD2 B:ASP4221 3.5 30.2 1.0 OD2 B:ASP4227 3.6 35.3 1.0 ND2 B:ASN4226 3.9 34.6 1.0 ND2 B:ASN4219 3.9 38.4 1.0 N B:ASN4223 4.0 41.2 1.0 CA B:ASN4223 4.0 33.8 1.0 N B:ASP4221 4.1 30.5 1.0 CB B:ASN4223 4.1 33.2 1.0 CB B:ASP4087 4.1 25.6 1.0 O B:HOH4544 4.3 25.1 1.0 N B:ASN4219 4.4 20.4 1.0 OD1 B:ASP4087 4.4 32.1 1.0 CB B:ASP4221 4.4 30.9 1.0 N B:MET4220 4.4 25.2 1.0 C B:ASN4226 4.5 37.6 1.0 N B:PRO4224 4.5 38.3 1.0 N B:ASP4227 4.6 36.0 1.0 CB B:ASP4227 4.6 38.0 1.0 CA B:ASP4221 4.6 34.4 1.0 O B:ASN4226 4.6 42.8 1.0 N B:ASN4226 4.6 40.1 1.0 CB B:ASN4219 4.7 29.1 1.0 CA B:PRO4224 4.7 33.5 1.0 CA B:ASP4227 4.7 42.1 1.0 CB B:ASN4226 4.7 34.9 1.0 C B:ASN4219 4.7 25.5 1.0 CA B:ASN4219 4.8 23.4 1.0 C B:ASP4221 4.8 36.2 1.0 CG B:ASN4223 4.8 43.3 1.0 CA B:ASN4226 4.9 37.0 1.0 C B:PRO4224 4.9 42.5 1.0 N B:ARG4222 5.0 31.6 1.0

N.Yeshaya, P.K.Gupta, O.Dym, D.Morgenstern, D.T.Major, D.Fass. Vwd Domain Stabilization By Autocatalytic Asp-Pro Cleavage. Protein Sci. V. 33 E4929 2024.
ISSN: ESSN 1469-896X
PubMed: 38380729
DOI: 10.1002/PRO.4929